-
1
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann, M. Functional and quantitative proteomics using SILAC Nat. Rev. Mol. Cell Biol. 2006, 7 (12) 952-958
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, Issue.12
, pp. 952-958
-
-
Mann, M.1
-
2
-
-
0036583926
-
Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics
-
Ong, S.-E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics Mol. Cell. Proteomics 2002, 1 (5) 376-386
-
(2002)
Mol. Cell. Proteomics
, vol.1
, Issue.5
, pp. 376-386
-
-
Ong, S.-E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
3
-
-
63049105321
-
MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data
-
Xu, H.; Freitas, M. A. MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data Proteomics 2009, 9 (6) 1548-1555
-
(2009)
Proteomics
, vol.9
, Issue.6
, pp. 1548-1555
-
-
Xu, H.1
Freitas, M.A.2
-
4
-
-
81255175600
-
SILACtor: Software to Enable Dynamic SILAC Studies
-
Hoopmann, M. R.; Chavez, J. D.; Bruce, J. E. SILACtor: Software To Enable Dynamic SILAC Studies Anal. Chem. 2011, 83 (22) 8403-8410
-
(2011)
Anal. Chem.
, vol.83
, Issue.22
, pp. 8403-8410
-
-
Hoopmann, M.R.1
Chavez, J.D.2
Bruce, J.E.3
-
5
-
-
41549117597
-
A quantitative analysis software tool for mass spectrometry-based proteomics
-
Park, S. K.; Venable, J. D.; Xu, T.; Yates, J. R. A quantitative analysis software tool for mass spectrometry-based proteomics Nat. Methods 2008, 5 (4) 319-322
-
(2008)
Nat. Methods
, vol.5
, Issue.4
, pp. 319-322
-
-
Park, S.K.1
Venable, J.D.2
Xu, T.3
Yates, J.R.4
-
6
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J.; Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nat. Biotechnol. 2008, 26 (12) 1367-1372
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.12
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
7
-
-
79952397382
-
UNiquant, a Program for Quantitative Proteomics Analysis Using Stable Isotope Labeling
-
Huang, X.; Tolmachev, A. V.; Shen, Y.; Liu, M.; Huang, L.; Zhang, Z.; Anderson, G. A.; Smith, R. D.; Chan, W. C.; Hinrichs, S. H.; Fu, K.; Ding, S.-J. UNiquant, a Program for Quantitative Proteomics Analysis Using Stable Isotope Labeling J. Proteome Res. 2010, 10 (3) 1228-1237
-
(2010)
J. Proteome Res.
, vol.10
, Issue.3
, pp. 1228-1237
-
-
Huang, X.1
Tolmachev, A.V.2
Shen, Y.3
Liu, M.4
Huang, L.5
Zhang, Z.6
Anderson, G.A.7
Smith, R.D.8
Chan, W.C.9
Hinrichs, S.H.10
Fu, K.11
Ding, S.-J.12
-
8
-
-
0034789979
-
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
-
Han, D. K.; Eng, J.; Zhou, H.; Aebersold, R. Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry Nat. Biotechnol. 2001, 19 (10) 946-951
-
(2001)
Nat. Biotechnol.
, vol.19
, Issue.10
, pp. 946-951
-
-
Han, D.K.1
Eng, J.2
Zhou, H.3
Aebersold, R.4
-
9
-
-
0344737959
-
Automated Statistical Analysis of Protein Abundance Ratios from Data Generated by Stable-Isotope Dilution and Tandem Mass Spectrometry
-
Li, X.-j.; Zhang, H.; Ranish, J. A.; Aebersold, R. Automated Statistical Analysis of Protein Abundance Ratios from Data Generated by Stable-Isotope Dilution and Tandem Mass Spectrometry Anal. Chem. 2003, 75 (23) 6648-6657
-
(2003)
Anal. Chem.
, vol.75
, Issue.23
, pp. 6648-6657
-
-
Li, X.-J.1
Zhang, H.2
Ranish, J.A.3
Aebersold, R.4
-
10
-
-
73649131275
-
MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics
-
Mortensen, P.; Gouw, J. W.; Olsen, J. V.; Ong, S.-E.; Rigbolt, K. T. G.; Bunkenborg, J.; Cox, J. r.; Foster, L. J.; Heck, A. J. R.; Blagoev, B.; Andersen, J. S.; Mann, M. MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics J. Proteome Res. 2009, 9 (1) 393-403
-
(2009)
J. Proteome Res.
, vol.9
, Issue.1
, pp. 393-403
-
-
Mortensen, P.1
Gouw, J.W.2
Olsen, J.V.3
Ong, S.-E.4
Rigbolt, K.T.G.5
Bunkenborg, J.6
Cox, J.R.7
Foster, L.J.8
Heck, A.J.R.9
Blagoev, B.10
Andersen, J.S.11
Mann, M.12
-
11
-
-
77950651307
-
Quantitative analysis of SILAC data sets using spectral counting
-
Parker, S. J.; Halligan, B. D.; Greene, A. S. Quantitative analysis of SILAC data sets using spectral counting Proteomics 2010, 10 (7) 1408-1415
-
(2010)
Proteomics
, vol.10
, Issue.7
, pp. 1408-1415
-
-
Parker, S.J.1
Halligan, B.D.2
Greene, A.S.3
-
12
-
-
0033826256
-
Type B histone acetyltransferase Hat1p participates in telomeric silencing
-
Kelly, T. J.; Qin, S.; Gottschling, D. E.; Parthun, M. R. Type B histone acetyltransferase Hat1p participates in telomeric silencing Mol. Cell. Biol. 2000, 20 (19) 7051-8
-
(2000)
Mol. Cell. Biol.
, vol.20
, Issue.19
, pp. 7051-7058
-
-
Kelly, T.J.1
Qin, S.2
Gottschling, D.E.3
Parthun, M.R.4
-
13
-
-
25144455418
-
H2B (Ser10) phosphorylation is induced during apoptosis and meiosis in S. Cerevisiae
-
Ahn, S. H.; Henderson, K. A.; Keeney, S.; Allis, C. D. H2B (Ser10) phosphorylation is induced during apoptosis and meiosis in S. cerevisiae Cell Cycle 2005, 4 (6) 780-3
-
(2005)
Cell Cycle
, vol.4
, Issue.6
, pp. 780-783
-
-
Ahn, S.H.1
Henderson, K.A.2
Keeney, S.3
Allis, C.D.4
-
14
-
-
33847028358
-
Quantitative profiling of histone post-translational modifications by stable isotope labeling
-
Knapp, A. R.; Ren, C.; Su, X.; Lucas, D. M.; Byrd, J. C.; Freitas, M. A.; Parthun, M. R. Quantitative profiling of histone post-translational modifications by stable isotope labeling Methods 2007, 41 (3) 312-9
-
(2007)
Methods
, vol.41
, Issue.3
, pp. 312-319
-
-
Knapp, A.R.1
Ren, C.2
Su, X.3
Lucas, D.M.4
Byrd, J.C.5
Freitas, M.A.6
Parthun, M.R.7
-
16
-
-
26244462329
-
Robust Linear Regression Using Theil's Method
-
Glaister, P. Robust Linear Regression Using Theil's Method J. Chem. Educ. 2005, 82 (10) 1472
-
(2005)
J. Chem. Educ.
, vol.82
, Issue.10
, pp. 1472
-
-
Glaister, P.1
-
17
-
-
0004156616
-
-
U.S. Geological Survey, Techniques of Water-Resources Investigations; U.S. Geological Survey: Reston, VA
-
Helsel, D. R.; Hirsch, R. M. USGS Statistical Methods in Water Resources; U.S. Geological Survey, Techniques of Water-Resources Investigations; U.S. Geological Survey: Reston, VA, 2002; Book 4.
-
(2002)
USGS Statistical Methods in Water Resources
-
-
Helsel, D.R.1
Hirsch, R.M.2
-
18
-
-
32944477758
-
Structural similarity between histone chaperone Cia1p/Asf1p and DNA-binding protein NF-kappaB
-
Padmanabhan, B.; Kataoka, K.; Umehara, T.; Adachi, N.; Yokoyama, S.; Horikoshi, M. Structural similarity between histone chaperone Cia1p/Asf1p and DNA-binding protein NF-kappaB J. Biochem. 2005, 138 (6) 821-9
-
(2005)
J. Biochem.
, vol.138
, Issue.6
, pp. 821-829
-
-
Padmanabhan, B.1
Kataoka, K.2
Umehara, T.3
Adachi, N.4
Yokoyama, S.5
Horikoshi, M.6
-
19
-
-
33748491718
-
Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
-
Patterson, T. A.; Lobenhofer, E. K.; Fulmer-Smentek, S. B.; Collins, P. J.; Chu, T.-M.; Bao, W.; Fang, H.; Kawasaki, E. S.; Hager, J.; Tikhonova, I. R.; Walker, S. J.; Zhang, L.; Hurban, P.; de Longueville, F.; Fuscoe, J. C.; Tong, W.; Shi, L.; Wolfinger, R. D. Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project Nat. Biotechnol. 2006, 24 (9) 1140-1150
-
(2006)
Nat. Biotechnol.
, vol.24
, Issue.9
, pp. 1140-1150
-
-
Patterson, T.A.1
Lobenhofer, E.K.2
Fulmer-Smentek, S.B.3
Collins, P.J.4
Chu, T.-M.5
Bao, W.6
Fang, H.7
Kawasaki, E.S.8
Hager, J.9
Tikhonova, I.R.10
Walker, S.J.11
Zhang, L.12
Hurban, P.13
De Longueville, F.14
Fuscoe, J.C.15
Tong, W.16
Shi, L.17
Wolfinger, R.D.18
-
20
-
-
14844353574
-
Identification and functional significance of genes regulated by structurally different histone deacetylase inhibitors
-
Peart, M. J.; Smyth, G. K.; van Laar, R. K.; Bowtell, D. D.; Richon, V. M.; Marks, P. A.; Holloway, A. J.; Johnstone, R. W. Identification and functional significance of genes regulated by structurally different histone deacetylase inhibitors Proc. Natl. Acad. Sci. U.S.A. 2005, 102 (10) 3697-3702
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, Issue.10
, pp. 3697-3702
-
-
Peart, M.J.1
Smyth, G.K.2
Van Laar, R.K.3
Bowtell, D.D.4
Richon, V.M.5
Marks, P.A.6
Holloway, A.J.7
Johnstone, R.W.8
-
21
-
-
84881114088
-
Discovery of Histone Modification Crosstalk Networks by SILAC Mass Spectrometry
-
Guan, X.; Rastogi, N.; Parthun, M. R.; Freitas, M. A. Discovery of Histone Modification Crosstalk Networks by SILAC Mass Spectrometry Mol. Cell. Proteomics 2013, 12, 2048-2059
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 2048-2059
-
-
Guan, X.1
Rastogi, N.2
Parthun, M.R.3
Freitas, M.A.4
-
22
-
-
0032555689
-
Structure of the histone acetyltransferase Hat1: A paradigm for the GCN5-related N-acetyltransferase superfamily
-
Dutnall, R. N.; Tafrov, S. T.; Sternglanz, R.; Ramakrishnan, V. Structure of the histone acetyltransferase Hat1: a paradigm for the GCN5-related N-acetyltransferase superfamily Cell 1998, 94 (4) 427-38
-
(1998)
Cell
, vol.94
, Issue.4
, pp. 427-438
-
-
Dutnall, R.N.1
Tafrov, S.T.2
Sternglanz, R.3
Ramakrishnan, V.4
-
23
-
-
0035941198
-
Effects of Acetylation of Histone H4 at Lysines 8 and 16 on Activity of the Hat1 Histone Acetyltransferase
-
Makowski, A. M.; Dutnall, R. N.; Annunziato, A. T. Effects of Acetylation of Histone H4 at Lysines 8 and 16 on Activity of the Hat1 Histone Acetyltransferase J. Biol. Chem. 2001, 276 (47) 43499-43502
-
(2001)
J. Biol. Chem.
, vol.276
, Issue.47
, pp. 43499-43502
-
-
Makowski, A.M.1
Dutnall, R.N.2
Annunziato, A.T.3
|