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Volumn 106, Issue 5, 2014, Pages 1205-1214

Global regulation of transcription by a small RNA: A quantitative view

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; DNA DIRECTED RNA POLYMERASE; RNA 6S;

EID: 84901742837     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2014.01.025     Document Type: Article
Times cited : (5)

References (41)
  • 1
    • 79959368804 scopus 로고    scopus 로고
    • Mechanism of bacterial transcription initiation: RNA polymerase-promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis
    • R.M. Saecker, M.T. Record Jr.; and P.L. Dehaseth Mechanism of bacterial transcription initiation: RNA polymerase-promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis J. Mol. Biol. 412 2011 754 771
    • (2011) J. Mol. Biol. , vol.412 , pp. 754-771
    • Saecker, R.M.1    Record Jr., M.T.2    Dehaseth, P.L.3
  • 2
    • 1842591130 scopus 로고    scopus 로고
    • The regulation of bacterial transcription initiation
    • D.F. Browning, and S.J. Busby The regulation of bacterial transcription initiation Nat. Rev. Microbiol. 2 2004 57 65
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 57-65
    • Browning, D.F.1    Busby, S.J.2
  • 4
    • 45449099933 scopus 로고    scopus 로고
    • Advances in bacterial promoter recognition and its control by factors that do not bind DNA
    • S.P. Haugen, W. Ross, and R.L. Gourse Advances in bacterial promoter recognition and its control by factors that do not bind DNA Nat. Rev. Microbiol. 6 2008 507 519
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 507-519
    • Haugen, S.P.1    Ross, W.2    Gourse, R.L.3
  • 5
    • 42149158392 scopus 로고    scopus 로고
    • Control of bacterial transcription, translation and replication by (p)ppGpp
    • A. Srivatsan, and J.D. Wang Control of bacterial transcription, translation and replication by (p)ppGpp Curr. Opin. Microbiol. 11 2008 100 105
    • (2008) Curr. Opin. Microbiol. , vol.11 , pp. 100-105
    • Srivatsan, A.1    Wang, J.D.2
  • 6
    • 1642352469 scopus 로고    scopus 로고
    • Spx-RNA polymerase interaction and global transcriptional control during oxidative stress
    • P. Zuber Spx-RNA polymerase interaction and global transcriptional control during oxidative stress J. Bacteriol. 186 2004 1911 1918
    • (2004) J. Bacteriol. , vol.186 , pp. 1911-1918
    • Zuber, P.1
  • 7
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. Coli RNA polymerase activity
    • K.M. Wassarman, and G. Storz 6S RNA regulates E. coli RNA polymerase activity Cell 101 2000 613 623
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 8
    • 36849045243 scopus 로고    scopus 로고
    • Two distinct types of 6S RNA in Prochlorococcus
    • I.M. Axmann, and J. Holtzendorff W.R. Hess Two distinct types of 6S RNA in Prochlorococcus Gene 406 2007 69 78
    • (2007) Gene , vol.406 , pp. 69-78
    • Axmann, I.M.1    Holtzendorff, J.2    Hess, W.R.3
  • 9
    • 17844379221 scopus 로고    scopus 로고
    • 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
    • J.E. Barrick, and N. Sudarsan R.R. Breaker 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter RNA 11 2005 774 784
    • (2005) RNA , vol.11 , pp. 774-784
    • Barrick, J.E.1    Sudarsan, N.2    Breaker, R.R.3
  • 10
    • 77952190441 scopus 로고    scopus 로고
    • Legionella pneumophila 6S RNA optimizes intracellular multiplication
    • S.P. Faucher, and G. Friedlander H.A. Shuman Legionella pneumophila 6S RNA optimizes intracellular multiplication Proc. Natl. Acad. Sci. USA 107 2010 7533 7538
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 7533-7538
    • Faucher, S.P.1    Friedlander, G.2    Shuman, H.A.3
  • 11
    • 77949425194 scopus 로고    scopus 로고
    • The primary transcriptome of the major human pathogen Helicobacter pylori
    • C.M. Sharma, and S. Hoffmann J. Vogel The primary transcriptome of the major human pathogen Helicobacter pylori Nature 464 2010 250 255
    • (2010) Nature , vol.464 , pp. 250-255
    • Sharma, C.M.1    Hoffmann, S.2    Vogel, J.3
  • 12
    • 18344371528 scopus 로고    scopus 로고
    • A highly conserved 6S RNA structure is required for regulation of transcription
    • A.E. Trotochaud, and K.M. Wassarman A highly conserved 6S RNA structure is required for regulation of transcription Nat. Struct. Mol. Biol. 12 2005 313 319
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 313-319
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 13
    • 29044449362 scopus 로고    scopus 로고
    • 6S RNA: An ancient regulator of bacterial RNA polymerase rediscovered
    • D.K. Willkomm, and R.K. Hartmann 6S RNA: an ancient regulator of bacterial RNA polymerase rediscovered Biol. Chem. 386 2005 1273 1277
    • (2005) Biol. Chem. , vol.386 , pp. 1273-1277
    • Willkomm, D.K.1    Hartmann, R.K.2
  • 15
    • 0017843404 scopus 로고
    • Small stable RNAs from Escherichia coli: Evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA
    • S.Y. Lee, S.C. Bailey, and D. Apirion Small stable RNAs from Escherichia coli: evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA J. Bacteriol. 133 1978 1015 1023
    • (1978) J. Bacteriol. , vol.133 , pp. 1015-1023
    • Lee, S.Y.1    Bailey, S.C.2    Apirion, D.3
  • 16
    • 39849104161 scopus 로고    scopus 로고
    • Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of σ70
    • A.T. Cavanagh, and A.D. Klocko K.M. Wassarman Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of σ70 Mol. Microbiol. 67 2008 1242 1256
    • (2008) Mol. Microbiol. , vol.67 , pp. 1242-1256
    • Cavanagh, A.T.1    Klocko, A.D.2    Wassarman, K.M.3
  • 17
    • 3242807381 scopus 로고    scopus 로고
    • 6S RNA function enhances long-term cell survival
    • A.E. Trotochaud, and K.M. Wassarman 6S RNA function enhances long-term cell survival J. Bacteriol. 186 2004 4978 4985
    • (2004) J. Bacteriol. , vol.186 , pp. 4978-4985
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 18
    • 33744774173 scopus 로고    scopus 로고
    • 6S RNA regulation of pspF transcription leads to altered cell survival at high pH
    • A.E. Trotochaud, and K.M. Wassarman 6S RNA regulation of pspF transcription leads to altered cell survival at high pH J. Bacteriol. 188 2006 3936 3943
    • (2006) J. Bacteriol. , vol.188 , pp. 3936-3943
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 19
    • 34247860970 scopus 로고    scopus 로고
    • Studies on the function of the riboregulator 6S RNA from E. Coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts
    • N. Gildehaus, and T. Neusser R. Wagner Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts Nucleic Acids Res. 35 2007 1885 1896
    • (2007) Nucleic Acids Res. , vol.35 , pp. 1885-1896
    • Gildehaus, N.1    Neusser, T.2    Wagner, R.3
  • 20
    • 40149091702 scopus 로고    scopus 로고
    • Studies on the expression of 6S RNA from E. Coli: Involvement of regulators important for stress and growth adaptation
    • T. Neusser, and N. Gildehaus R. Wagner Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaptation Biol. Chem. 389 2008 285 297
    • (2008) Biol. Chem. , vol.389 , pp. 285-297
    • Neusser, T.1    Gildehaus, N.2    Wagner, R.3
  • 21
    • 33845450357 scopus 로고    scopus 로고
    • Synthesis-mediated release of a small RNA inhibitor of RNA polymerase
    • K.M. Wassarman, and R.M. Saecker Synthesis-mediated release of a small RNA inhibitor of RNA polymerase Science 314 2006 1601 1603
    • (2006) Science , vol.314 , pp. 1601-1603
    • Wassarman, K.M.1    Saecker, R.M.2
  • 22
    • 0027715744 scopus 로고
    • Isolation and characterization of an Escherichia coli mutant defective in resuming growth after starvation
    • D.A. Siegele, and R. Kolter Isolation and characterization of an Escherichia coli mutant defective in resuming growth after starvation Genes Dev. 7 12B 1993 2629 2640
    • (1993) Genes Dev. , vol.7 , pp. 2629-2640
    • Siegele, D.A.1    Kolter, R.2
  • 23
    • 77749336620 scopus 로고    scopus 로고
    • 6S RNA-dependent inhibition of RNA polymerase is released by RNA-dependent synthesis of small de novo products
    • R. Wurm, T. Neusser, and R. Wagner 6S RNA-dependent inhibition of RNA polymerase is released by RNA-dependent synthesis of small de novo products Biol. Chem. 391 2010 187 196
    • (2010) Biol. Chem. , vol.391 , pp. 187-196
    • Wurm, R.1    Neusser, T.2    Wagner, R.3
  • 24
    • 84869476918 scopus 로고    scopus 로고
    • A conformational switch is responsible for the reversal of the 6S RNA-dependent RNA polymerase inhibition in Escherichia coli
    • B. Steuten, and R. Wagner A conformational switch is responsible for the reversal of the 6S RNA-dependent RNA polymerase inhibition in Escherichia coli Biol. Chem. 393 2012 1513 1522
    • (2012) Biol. Chem. , vol.393 , pp. 1513-1522
    • Steuten, B.1    Wagner, R.2
  • 25
    • 84869827868 scopus 로고    scopus 로고
    • E. Coli 6S RNA release from RNA polymerase requires σ70 ejection by scrunching and is orchestrated by a conserved RNA hairpin
    • S.S. Panchapakesan, and P.J. Unrau E. coli 6S RNA release from RNA polymerase requires σ70 ejection by scrunching and is orchestrated by a conserved RNA hairpin RNA 18 2012 2251 2259
    • (2012) RNA , vol.18 , pp. 2251-2259
    • Panchapakesan, S.S.1    Unrau, P.J.2
  • 26
    • 84858379381 scopus 로고    scopus 로고
    • Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. Coli and B. Subtilis
    • A.T. Cavanagh, J.M. Sperger, and K.M. Wassarman Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis Nucleic Acids Res. 40 2012 2234 2246
    • (2012) Nucleic Acids Res. , vol.40 , pp. 2234-2246
    • Cavanagh, A.T.1    Sperger, J.M.2    Wassarman, K.M.3
  • 27
    • 84859423675 scopus 로고    scopus 로고
    • In vivo and in vitro analysis of 6S RNA-templated short transcripts in Bacillus subtilis
    • B.M. Beckmann, and O.Y. Burenina R.K. Hartmann In vivo and in vitro analysis of 6S RNA-templated short transcripts in Bacillus subtilis RNA Biol. 8 2011 839 849
    • (2011) RNA Biol. , vol.8 , pp. 839-849
    • Beckmann, B.M.1    Burenina, O.Y.2    Hartmann, R.K.3
  • 28
    • 84859426404 scopus 로고    scopus 로고
    • A pRNA-induced structural rearrangement triggers 6S-1 RNA release from RNA polymerase in Bacillus subtilis
    • B.M. Beckmann, and P.G. Hoch R.K. Hartmann A pRNA-induced structural rearrangement triggers 6S-1 RNA release from RNA polymerase in Bacillus subtilis EMBO J. 31 2012 1727 1738
    • (2012) EMBO J. , vol.31 , pp. 1727-1738
    • Beckmann, B.M.1    Hoch, P.G.2    Hartmann, R.K.3
  • 29
    • 84883470700 scopus 로고    scopus 로고
    • Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli
    • I.J. Cabrera-Ostertag, A.T. Cavanagh, and K.M. Wassarman Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli Nucleic Acids Res. 41 2013 7501 7511
    • (2013) Nucleic Acids Res. , vol.41 , pp. 7501-7511
    • Cabrera-Ostertag, I.J.1    Cavanagh, A.T.2    Wassarman, K.M.3
  • 30
    • 0033765113 scopus 로고    scopus 로고
    • Functional modulation of Escherichia coli RNA polymerase
    • A. Ishihama Functional modulation of Escherichia coli RNA polymerase Annu. Rev. Microbiol. 54 2000 499 518
    • (2000) Annu. Rev. Microbiol. , vol.54 , pp. 499-518
    • Ishihama, A.1
  • 31
    • 0041669435 scopus 로고    scopus 로고
    • Control of rRNA expression by small molecules is dynamic and nonredundant
    • H.D. Murray, D.A. Schneider, and R.L. Gourse Control of rRNA expression by small molecules is dynamic and nonredundant Mol. Cell 12 2003 125 134
    • (2003) Mol. Cell , vol.12 , pp. 125-134
    • Murray, H.D.1    Schneider, D.A.2    Gourse, R.L.3
  • 32
    • 34548668642 scopus 로고    scopus 로고
    • Quantitative characteristics of gene regulation by small RNA
    • E. Levine, and Z. Zhang T. Hwa Quantitative characteristics of gene regulation by small RNA PLoS Biol. 5 2007 e229
    • (2007) PLoS Biol. , vol.5 , pp. 229
    • Levine, E.1    Zhang, Z.2    Hwa, T.3
  • 33
    • 0031459386 scopus 로고    scopus 로고
    • A small, stable RNA induced by oxidative stress: Role as a pleiotropic regulator and antimutator
    • S. Altuvia, and D. Weinstein-Fischer G. Storz A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator Cell 90 1997 43 53
    • (1997) Cell , vol.90 , pp. 43-53
    • Altuvia, S.1    Weinstein-Fischer, D.2    Storz, G.3
  • 35
    • 0014939623 scopus 로고
    • Protein degradation in Escherichia coli. I. Measurement of rapidly and slowly decaying components
    • K. Nath, and A.L. Koch Protein degradation in Escherichia coli. I. Measurement of rapidly and slowly decaying components J. Biol. Chem. 245 1970 2889 2900
    • (1970) J. Biol. Chem. , vol.245 , pp. 2889-2900
    • Nath, K.1    Koch, A.L.2
  • 36
    • 1542267833 scopus 로고    scopus 로고
    • Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
    • J.A. Bernstein, and P.H. Lin S. Lin-Chao Global analysis of Escherichia coli RNA degradosome function using DNA microarrays Proc. Natl. Acad. Sci. USA 101 2004 2758 2763
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 2758-2763
    • Bernstein, J.A.1    Lin, P.H.2    Lin-Chao, S.3
  • 38
    • 0031779081 scopus 로고    scopus 로고
    • RNA polymerase-promoter interactions: The comings and goings of RNA polymerase
    • P.L. deHaseth, M.L. Zupancic, and M.T. Record Jr. RNA polymerase-promoter interactions: the comings and goings of RNA polymerase J. Bacteriol. 180 1998 3019 3025
    • (1998) J. Bacteriol. , vol.180 , pp. 3019-3025
    • Dehaseth, P.L.1    Zupancic, M.L.2    Record Jr., M.T.3
  • 39
    • 0021891874 scopus 로고
    • Mechanism and control of transcription initiation in prokaryotes
    • W.R. McClure Mechanism and control of transcription initiation in prokaryotes Annu. Rev. Biochem. 54 1985 171 204
    • (1985) Annu. Rev. Biochem. , vol.54 , pp. 171-204
    • McClure, W.R.1
  • 41
    • 34548726030 scopus 로고    scopus 로고
    • Is there a liquid state machine in the bacterium Escherichia coli?
    • B. Jones, and D. Stekel C. Fernando Is there a liquid state machine in the bacterium Escherichia coli? Proc 2007 IEEE Symp. Artif. Life. 2007 2007 187 191
    • (2007) Proc 2007 IEEE Symp. Artif. Life. , vol.2007 , pp. 187-191
    • Jones, B.1    Stekel, D.2    Fernando, C.3


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