메뉴 건너뛰기




Volumn 10, Issue 2, 2014, Pages

Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Drosophila Germline

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; ENDOGENOUS SMALL INTERFERING RNA; PIWI INTERACTING RNA; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; EUCHROMATIN; TRANSPOSON;

EID: 84901740683     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004138     Document Type: Article
Times cited : (107)

References (40)
  • 1
    • 0037975554 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements in the Drosophila melanogaster genome
    • Kapitonov VV, Jurka J, (2003) Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc Natl Acad Sci U S A 100: 6569-6574.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 6569-6574
    • Kapitonov, V.V.1    Jurka, J.2
  • 2
    • 0002636459 scopus 로고    scopus 로고
    • Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
    • Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, et al. (2002) Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol 3: RESEARCH0083.
    • (2002) Genome Biol , vol.3
    • Misra, S.1    Crosby, M.A.2    Mungall, C.J.3    Matthews, B.B.4    Campbell, K.S.5
  • 3
    • 0012341115 scopus 로고    scopus 로고
    • The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
    • Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, et al. (2002) The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biol 3: RESEARCH0084.
    • (2002) Genome Biol , vol.3
    • Kaminker, J.S.1    Bergman, C.M.2    Kronmiller, B.3    Carlson, J.4    Svirskas, R.5
  • 4
    • 52949095077 scopus 로고    scopus 로고
    • Retrotransposons revisited: the restraint and rehabilitation of parasites
    • Goodier JL, Kazazian HH Jr, (2008) Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135: 23-35.
    • (2008) Cell , vol.135 , pp. 23-35
    • Goodier, J.L.1    Kazazian Jr., H.H.2
  • 5
    • 34250813192 scopus 로고    scopus 로고
    • The Release 5.1 annotation of Drosophila melanogaster heterochromatin
    • Smith CD, Shu S, Mungall CJ, Karpen GH, (2007) The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Science 316: 1586-1591.
    • (2007) Science , vol.316 , pp. 1586-1591
    • Smith, C.D.1    Shu, S.2    Mungall, C.J.3    Karpen, G.H.4
  • 6
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, et al. (2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5
  • 7
    • 33747369856 scopus 로고    scopus 로고
    • Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
    • Saito K, Nishida KM, Mori T, Kawamura Y, Miyoshi K, et al. (2006) Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev 20: 2214-2222.
    • (2006) Genes Dev , vol.20 , pp. 2214-2222
    • Saito, K.1    Nishida, K.M.2    Mori, T.3    Kawamura, Y.4    Miyoshi, K.5
  • 8
    • 65549105694 scopus 로고    scopus 로고
    • Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
    • Malone CD, Brennecke J, Dus M, Stark A, McCombie WR, et al. (2009) Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 137: 522-535.
    • (2009) Cell , vol.137 , pp. 522-535
    • Malone, C.D.1    Brennecke, J.2    Dus, M.3    Stark, A.4    McCombie, W.R.5
  • 9
    • 33947390781 scopus 로고    scopus 로고
    • A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila
    • Gunawardane LS, Saito K, Nishida KM, Miyoshi K, Kawamura Y, et al. (2007) A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila. Science 315: 1587-1590.
    • (2007) Science , vol.315 , pp. 1587-1590
    • Gunawardane, L.S.1    Saito, K.2    Nishida, K.M.3    Miyoshi, K.4    Kawamura, Y.5
  • 10
    • 68549128834 scopus 로고    scopus 로고
    • piRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline
    • Lim AK, Tao L, Kai T, (2009) piRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline. J Cell Biol 186: 333-342.
    • (2009) J Cell Biol , vol.186 , pp. 333-342
    • Lim, A.K.1    Tao, L.2    Kai, T.3
  • 11
    • 80455178787 scopus 로고    scopus 로고
    • Mechanism of the piRNA-mediated silencing of Drosophila telomeric retrotransposons
    • Shpiz S, Olovnikov I, Sergeeva A, Lavrov S, Abramov Y, et al. (2011) Mechanism of the piRNA-mediated silencing of Drosophila telomeric retrotransposons. Nucleic Acids Res 39: 8703-8711.
    • (2011) Nucleic Acids Res , vol.39 , pp. 8703-8711
    • Shpiz, S.1    Olovnikov, I.2    Sergeeva, A.3    Lavrov, S.4    Abramov, Y.5
  • 12
    • 84874240831 scopus 로고    scopus 로고
    • Multiple roles for Piwi in silencing Drosophila transposons
    • Rozhkov NV, Hammell M, Hannon GJ, (2013) Multiple roles for Piwi in silencing Drosophila transposons. Genes Dev 27: 400-412.
    • (2013) Genes Dev , vol.27 , pp. 400-412
    • Rozhkov, N.V.1    Hammell, M.2    Hannon, G.J.3
  • 13
    • 84874230944 scopus 로고    scopus 로고
    • Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state
    • Le Thomas A, Rogers AK, Webster A, Marinov GK, Liao SE, et al. (2013) Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state. Genes Dev 27: 390-399.
    • (2013) Genes Dev , vol.27 , pp. 390-399
    • Le Thomas, A.1    Rogers, A.K.2    Webster, A.3    Marinov, G.K.4    Liao, S.E.5
  • 14
    • 77955101011 scopus 로고    scopus 로고
    • Small RNA-based silencing strategies for transposons in the process of invading Drosophila species
    • Rozhkov NV, Aravin AA, Zelentsova ES, Schostak NG, Sachidanandam R, et al. (2010) Small RNA-based silencing strategies for transposons in the process of invading Drosophila species. RNA 16: 1634-1645.
    • (2010) RNA , vol.16 , pp. 1634-1645
    • Rozhkov, N.V.1    Aravin, A.A.2    Zelentsova, E.S.3    Schostak, N.G.4    Sachidanandam, R.5
  • 15
    • 52049098967 scopus 로고    scopus 로고
    • A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
    • Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, et al. (2008) A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell 31: 785-799.
    • (2008) Mol Cell , vol.31 , pp. 785-799
    • Aravin, A.A.1    Sachidanandam, R.2    Bourc'his, D.3    Schaefer, C.4    Pezic, D.5
  • 16
    • 44349104241 scopus 로고    scopus 로고
    • An endogenous small interfering RNA pathway in Drosophila
    • Czech B, Malone CD, Zhou R, Stark A, Schlingeheyde C, et al. (2008) An endogenous small interfering RNA pathway in Drosophila. Nature 453: 798-802.
    • (2008) Nature , vol.453 , pp. 798-802
    • Czech, B.1    Malone, C.D.2    Zhou, R.3    Stark, A.4    Schlingeheyde, C.5
  • 17
    • 44449096738 scopus 로고    scopus 로고
    • Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
    • Ghildiyal M, Seitz H, Horwich MD, Li C, Du T, et al. (2008) Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells. Science 320: 1077-1081.
    • (2008) Science , vol.320 , pp. 1077-1081
    • Ghildiyal, M.1    Seitz, H.2    Horwich, M.D.3    Li, C.4    Du, T.5
  • 18
    • 44349103084 scopus 로고    scopus 로고
    • Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
    • Kawamura Y, Saito K, Kin T, Ono Y, Asai K, et al. (2008) Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. Nature 453: 793-797.
    • (2008) Nature , vol.453 , pp. 793-797
    • Kawamura, Y.1    Saito, K.2    Kin, T.3    Ono, Y.4    Asai, K.5
  • 19
    • 84878884615 scopus 로고    scopus 로고
    • De novo piRNA cluster formation in the Drosophila germ line triggered by transgenes containing a transcribed transposon fragment
    • Olovnikov I, Ryazansky S, Shpiz S, Lavrov S, Abramov Y, et al. (2013) De novo piRNA cluster formation in the Drosophila germ line triggered by transgenes containing a transcribed transposon fragment. Nucleic Acids Res 41: 5757-5768.
    • (2013) Nucleic Acids Res , vol.41 , pp. 5757-5768
    • Olovnikov, I.1    Ryazansky, S.2    Shpiz, S.3    Lavrov, S.4    Abramov, Y.5
  • 20
    • 84866440781 scopus 로고    scopus 로고
    • DELLY: structural variant discovery by integrated paired-end and split-read analysis
    • Rausch T, Zichner T, Schlattl A, Stutz AM, Benes V, et al. (2012) DELLY: structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics 28: i333-i339.
    • (2012) Bioinformatics , vol.28
    • Rausch, T.1    Zichner, T.2    Schlattl, A.3    Stutz, A.M.4    Benes, V.5
  • 21
    • 84857498958 scopus 로고    scopus 로고
    • Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster
    • Kofler R, Betancourt AJ, Schlotterer C, (2012) Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster. PLoS Genet 8: e1002487.
    • (2012) PLoS Genet , vol.8
    • Kofler, R.1    Betancourt, A.J.2    Schlotterer, C.3
  • 22
    • 78049317736 scopus 로고    scopus 로고
    • Genomic instability of I elements of Drosophila melanogaster in absence of dysgenic crosses
    • pii: e13142
    • Moschetti R, Dimitri P, Caizzi R, Junakovic N, (2010) Genomic instability of I elements of Drosophila melanogaster in absence of dysgenic crosses. PLoS ONE 5: pii: e13142.
    • (2010) PLoS ONE , vol.5
    • Moschetti, R.1    Dimitri, P.2    Caizzi, R.3    Junakovic, N.4
  • 23
    • 65549118489 scopus 로고    scopus 로고
    • Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
    • Li C, Vagin VV, Lee S, Xu J, Ma S, et al. (2009) Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Cell 137: 509-521.
    • (2009) Cell , vol.137 , pp. 509-521
    • Li, C.1    Vagin, V.V.2    Lee, S.3    Xu, J.4    Ma, S.5
  • 24
    • 84864042164 scopus 로고    scopus 로고
    • shutdown is a component of the Drosophila piRNA biogenesis machinery
    • Preall JB, Czech B, Guzzardo PM, Muerdter F, Hannon GJ, (2012) shutdown is a component of the Drosophila piRNA biogenesis machinery. RNA 18: 1446-1457.
    • (2012) RNA , vol.18 , pp. 1446-1457
    • Preall, J.B.1    Czech, B.2    Guzzardo, P.M.3    Muerdter, F.4    Hannon, G.J.5
  • 25
    • 84878851966 scopus 로고    scopus 로고
    • A transcriptome-wide RNAi screen in the Drosophila ovary reveals factors of the germline piRNA pathway
    • Czech B, Preall JB, McGinn J, Hannon GJ, (2013) A transcriptome-wide RNAi screen in the Drosophila ovary reveals factors of the germline piRNA pathway. Mol Cell 50: 749-761.
    • (2013) Mol Cell , vol.50 , pp. 749-761
    • Czech, B.1    Preall, J.B.2    McGinn, J.3    Hannon, G.J.4
  • 27
    • 84876070120 scopus 로고    scopus 로고
    • An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes
    • Li XZ, Roy CK, Dong X, Bolcun-Filas E, Wang J, et al. (2013) An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes. Mol Cell 50: 67-81.
    • (2013) Mol Cell , vol.50 , pp. 67-81
    • Li, X.Z.1    Roy, C.K.2    Dong, X.3    Bolcun-Filas, E.4    Wang, J.5
  • 28
    • 33751008398 scopus 로고    scopus 로고
    • Identification of multiple transcription initiation, polyadenylation, and splice sites in the Drosophila melanogaster TART family of telomeric retrotransposons
    • Maxwell PH, Belote JM, Levis RW, (2006) Identification of multiple transcription initiation, polyadenylation, and splice sites in the Drosophila melanogaster TART family of telomeric retrotransposons. Nucleic Acids Res 34: 5498-5507.
    • (2006) Nucleic Acids Res , vol.34 , pp. 5498-5507
    • Maxwell, P.H.1    Belote, J.M.2    Levis, R.W.3
  • 29
    • 0025938190 scopus 로고
    • Convergent transcription initiates from oppositely oriented promoters within the 5′ end regions of Drosophila melanogaster F elements
    • Minchiotti G, Di Nocera PP, (1991) Convergent transcription initiates from oppositely oriented promoters within the 5′ end regions of Drosophila melanogaster F elements. Mol Cell Biol 11: 5171-5180.
    • (1991) Mol Cell Biol , vol.11 , pp. 5171-5180
    • Minchiotti, G.1    Di Nocera, P.P.2
  • 30
    • 58549112018 scopus 로고    scopus 로고
    • rasiRNA pathway controls antisense expression of Drosophila telomeric retrotransposons in the nucleus
    • Shpiz S, Kwon D, Rozovsky Y, Kalmykova A, (2009) rasiRNA pathway controls antisense expression of Drosophila telomeric retrotransposons in the nucleus. Nucleic Acids Res 37: 268-278.
    • (2009) Nucleic Acids Res , vol.37 , pp. 268-278
    • Shpiz, S.1    Kwon, D.2    Rozovsky, Y.3    Kalmykova, A.4
  • 31
    • 0034999474 scopus 로고    scopus 로고
    • Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes
    • Speek M, (2001) Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Mol Cell Biol 21: 1973-1985.
    • (2001) Mol Cell Biol , vol.21 , pp. 1973-1985
    • Speek, M.1
  • 32
    • 84870060785 scopus 로고    scopus 로고
    • Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression
    • Sienski G, Donertas D, Brennecke J, (2012) Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. Cell 151: 964-980.
    • (2012) Cell , vol.151 , pp. 964-980
    • Sienski, G.1    Donertas, D.2    Brennecke, J.3
  • 33
    • 34248160438 scopus 로고    scopus 로고
    • Developmentally regulated piRNA clusters implicate MILI in transposon control
    • Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ, (2007) Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 316: 744-747.
    • (2007) Science , vol.316 , pp. 744-747
    • Aravin, A.A.1    Sachidanandam, R.2    Girard, A.3    Fejes-Toth, K.4    Hannon, G.J.5
  • 34
    • 72649094955 scopus 로고    scopus 로고
    • A broadly conserved pathway generates 3′UTR-directed primary piRNAs
    • Robine N, Lau NC, Balla S, Jin Z, Okamura K, et al. (2009) A broadly conserved pathway generates 3′UTR-directed primary piRNAs. Curr Biol 19: 2066-2076.
    • (2009) Curr Biol , vol.19 , pp. 2066-2076
    • Robine, N.1    Lau, N.C.2    Balla, S.3    Jin, Z.4    Okamura, K.5
  • 35
    • 70449519397 scopus 로고    scopus 로고
    • A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila
    • Saito K, Inagaki S, Mituyama T, Kawamura Y, Ono Y, et al. (2009) A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila. Nature 461: 1296-1299.
    • (2009) Nature , vol.461 , pp. 1296-1299
    • Saito, K.1    Inagaki, S.2    Mituyama, T.3    Kawamura, Y.4    Ono, Y.5
  • 36
    • 33746502166 scopus 로고    scopus 로고
    • A distinct small RNA pathway silences selfish genetic elements in the germline
    • Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, et al. (2006) A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324.
    • (2006) Science , vol.313 , pp. 320-324
    • Vagin, V.V.1    Sigova, A.2    Li, C.3    Seitz, H.4    Gvozdev, V.5
  • 37
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 38
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 40
    • 1342310698 scopus 로고    scopus 로고
    • Combined immunostaining and FISH analysis of polytene chromosomes
    • Lavrov S, Dejardin J, Cavalli G, (2004) Combined immunostaining and FISH analysis of polytene chromosomes. Methods Mol Biol 247: 289-303.
    • (2004) Methods Mol Biol , vol.247 , pp. 289-303
    • Lavrov, S.1    Dejardin, J.2    Cavalli, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.