QTL analysis reveals context-dependent loci for seed glucosinolate trait in the oilseed Brassica juncea: Importance of recurrent selection backcross scheme for the identification of 'true' QTL

Theoretical and Applied Genetics

Volumn 116, Issue 1, 2007, Pages 77-85

  Ramchiary, N ^a   Bisht, N C ^a   Gupta, V ^a   Mukhopadhyay, A ^a   Arumugam, N ^a,b   Sodhi, Y S ^a   Pental, D ^a   Pradhan, A K ^a  

^a UNIVERSITY OF DELHI   (India)

^b PONDICHERRY UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; BIOMARKERS; GENE EXPRESSION; GENETIC ENGINEERING; GLUCOSE;

EPISTASIS; GLUCOSINOLATES; QUANTITATIVE TRAIT;

PLANTS (BOTANY);

GLUCOSINOLATE;

ARTICLE; BRASSICA; BREEDING; CHROMOSOME MAP; CROSS BREEDING; GENETIC MARKER; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; GROWTH, DEVELOPMENT AND AGING; PHENOTYPE; PLANT SEED; QUANTITATIVE TRAIT LOCUS;

BREEDING; CHROMOSOME MAPPING; CROSSES, GENETIC; GENETIC MARKERS; GLUCOSINOLATES; MUSTARD PLANT; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SEEDS; SELECTION (GENETICS); VARIATION (GENETICS);

BRASSICA; BRASSICA JUNCEA; VARUNA;

EID: 36348932230     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-007-0648-4     Document Type: Article

References (35)

1. Boer MP, ter Braak CJF, Jansen RC (2002) A penalized likelihood method for mapping epistatic quantitative trait loci with one-dimensional genome searches. Genetics 162:951-960
2. Cheung WY, Landry BS, Raney P, Rakow GFW (1998) Molecular mapping of seed quality traits in Brassica juncea L. Czern and Cross. Acta Hortic 459:139-147
3. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
4. Doerge RW, Churchill GA (1996) Permutation test for multiple loci affecting a quantitative character. Genetics 142:285-294
5. Gao M, Li G, Yang B, Qiu D, Farnham M, Quiros C (2007) High-density Brassica oleracea linkage map: identification of useful new linkages. Theor Appl Genet 115:277-287
6. Gland A, Röbbelen G, Thies W (1981) Variation of alkenyl glucosinolates in seeds of Brassica species. Z Pflanzenzüchtg 87:96-110
7. Halkier BA, Gershenzon J (2006) Biology and biochemistry of glucosinolates. Annu Rev Plant Biol 57:303-333
8. Hill WG (1998) Selection and recurrent backcrossing to develop congenic lines for quantitative trait loci analysis. Genetics 148:1341-1352
9. Hospital F (2005) Selection in backcross programmes. Phil Trans R Soc B 360:1503-1511
10. Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M (2003) A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science 302:449-453
11. Kraling K, Robbelen G, Thies W, Herrmann M, Ahmadi MR (1990) Variation in seed glucosinolates in lines of Brassica napus. Plant Breed 105:33-39
12. Lecomte L, Duffe P, Buret M, Servin B, Hospital F, Causse M (2004) Marker-assisted introgression of five QTLs controlling fruit quality traits into three tomato lines revealed interactions between QTLs and genetic backgrounds. Theor Appl Genet 109:658-668
13. Lionneton E, Aubert G, Ochatt S, Merah O (2004) Genetic analysis of agronomic and quality traits in mustard (Brassica juncea). Theor Appl Genet 109:792-799
14. Love HR, Rakow G, Raney JP, Downey RK (1990a) Development of low glucosinolate mustard. Can J Plant Sci 70:419-424
15. Love HR, Rakow G, Raney JP, Downey RK (1990b) Genetic control of 2-propenyl and 3-butenyl glucosinolate synthesis in mustard. Can J Plant Sci 70:425-429
16. Luo ZW, Ma L (2004) An improved formulation of marker heterozygosity in recurrent selection and backcross schemes. Genet Res Camb 83:49-53
17. Luo ZW, Wu CI, Kearsey MJ (2002) Precision and high-resolution mapping of quantitative trait loci by use of recurrent selection, backcross or intercross schemes. Genetics 161:915-929
18. Magrath R, Herron C, Giamoustaris A, Mithen R (1993) The inheritance of aliphatic glucosinolates in Brassica napus. Plant Breed 111:55-72
19. Mahmood T, Ekuere U, Yeh F, Good AG, Stringam GR (2003) Molecular mapping of seed aliphatic glucosinolates in Brassica juncea. Genome 46:753-760
20. Mukhopadhyay A, Arumugam N, Sodhi YS, Gupta V, Pradhan AK, Pental D (2007) High frequency production of microspore derived doubled haploid (DH) and its application for developing low glucosinolate lines in Indian Brassica juncea. In: Proceedings of the 12th International Rapeseed Congr, Wuhan, pp 333-335
21. Pradhan AK, Sodhi YS, Mukhopadhyay A, Pental D (1993) Heterosis breeding in Indian mustard (Brassica juncea L. Czern & Cross): analysis of component characters contributing to heterosis for yield. Euphytica 69:219-229
22. Pradhan AK, Gupta V, Mukhopadhyay A, Arumugam N, Sodhi YS, Pental D (2003) A high density linkage map in Brassica juncea (Indian mustard) using AFLP and RFLP markers. Theor Appl Genet 106:607-614
23. Quijada PA, Udall JA, Lambert B, Osborn TC (2006) Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): identification of genomic regions from winter germplasm. Theor Appl Genet 113:549-561
24. Ramchiary N, Padmaja KL, Sharma S, Gupta V, Sodhi YS, Mukhopadhyay A, Arumugam N, Pental D, Pradhan AK (2007) Mapping of yield influencing QTL in Brassica juncea: implications for breeding of major oilseed crop of dryland areas. Theor Appl Genet. doi: 10.1007/s00122-007-0610-5
25. Rogers SO, Bendich AJ (1994) Extraction of total cellular DNA from plants, algae and fungi. In: Gelvin SB, Shilperoot RA (eds) Plant molecular biology manual. Kluwer, Dordrecht, pp 1-8
26. Sebolt AM, Shoemaker RC, Diers BW (2000) Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean. Crop Sci 40:1438-1444
27. Shen L, Courtois B, McNally KL, Robin S, Li Z (2001) Evaluation of near isogenic lines rice introgressed with QTLs for root depth through marker-aided selection. Theor Appl Genet 103:75-83
28. Sodhi YS, Mukhopadhyay A., Arumugam N, Verma JK, Gupta V, Pental D, Pradhan AK (2002) Genetic analysis of total glucosinolate in crosses involving a high glucosinolate Indian variety and a low glucosinolate line of Brassica juncea. Plant Breed 121:508-511
29. Srivastava A, Gupta V, Pental D, Pradhan AK (2000) AFLP-based genetic diversity assessment amongst agronomically important natural and some newly synthesized lines of Brassica juncea. Theor Appl Genet 102:193-199
30. Stringam GR, Thiagarajah MR (1995) Inheritance of alkenyl glucosinolates in traditional and microspore-derived doubled haploid populations of Brassica juncea L. Czern & Cross. In: Proceedings of the 9th International Rapeseed Congr, Cambridge, pp 804-806
31. van Eeuwijk FA, Crossa J, Vargas M, Ribaut J-M (2002) Analyzing QTL by environment interaction by factorial regression, with an application to the CIMMYT drought and low nitrogen stress programme in maize. In: Kang MS (ed) Quantitative genetics, genomics and plant breeding. CAB International, Wallingford, pp 245-256
32. Wang S, Basten CJ, Gaffney P, Zeng ZB (2001-2005) Windows QTL Cartographer version 2.5. North Carolina State University, Bioinformatics Research Center, Raleigh
33. Wright S (1952) Quantitative inheritance. Her Majesty's Stationery Office, London
34. Zeng ZB (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972-10976
35. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468