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Volumn 186, Issue 3, 2014, Pages 357-366

A soluble mutant of the transmembrane receptor Af1503 features strong changes in coiled-coil periodicity

Author keywords

Coiled coil; HAMP domain; Transmembrane signaling; Two component signal transduction

Indexed keywords

BACTERIAL PROTEIN; MUTANT PROTEIN; RECEPTOR; TETRAMER; TRANSMEMBRANE RECEPTOR AF1503; UNCLASSIFIED DRUG; ARCHAEAL PROTEIN;

EID: 84901621471     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2014.02.008     Document Type: Article
Times cited : (13)

References (31)
  • 2
    • 77951974279 scopus 로고    scopus 로고
    • A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins
    • Alvarez B.H., Gruber M., Ursinus A., Dunin-Horkawicz S., Lupas A.N., Zeth K. A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins. J. Struct. Biol. 2010, 170:236-245.
    • (2010) J. Struct. Biol. , vol.170 , pp. 236-245
    • Alvarez, B.H.1    Gruber, M.2    Ursinus, A.3    Dunin-Horkawicz, S.4    Lupas, A.N.5    Zeth, K.6
  • 3
    • 33748337934 scopus 로고    scopus 로고
    • The Buccaneer software for automated model building. 1. Tracing protein chains
    • Cowtan K. The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 2006, 62:1002-1011.
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.62 , pp. 1002-1011
    • Cowtan, K.1
  • 4
    • 77951974524 scopus 로고    scopus 로고
    • Measuring the conformational space of square four-helical bundles with the program samCC
    • Dunin-Horkawicz S., Lupas A.N. Measuring the conformational space of square four-helical bundles with the program samCC. J. Struct. Biol. 2010, 170:226-235.
    • (2010) J. Struct. Biol. , vol.170 , pp. 226-235
    • Dunin-Horkawicz, S.1    Lupas, A.N.2
  • 5
    • 77950492834 scopus 로고    scopus 로고
    • Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction
    • Dunin-Horkawicz S., Lupas A.N. Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction. J. Mol. Biol. 2010, 397:1156-1174.
    • (2010) J. Mol. Biol. , vol.397 , pp. 1156-1174
    • Dunin-Horkawicz, S.1    Lupas, A.N.2
  • 6
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 8
    • 84901605275 scopus 로고    scopus 로고
    • Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor
    • Ferris, H.U., Zeth, K., Hulko, M., Dunin-Horkawicz, S., Lupas, A.N., 2014a. Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor. J. Struct. Biol. 186, 349-356.
    • (2014) J. Struct. Biol. , vol.186 , pp. 349-356
    • Ferris, H.U.1    Zeth, K.2    Hulko, M.3    Dunin-Horkawicz, S.4    Lupas, A.N.5
  • 9
    • 84901612806 scopus 로고    scopus 로고
    • Crystallographic snapshot of the Escherichia coli EnvZ histidine kinase in an active conformation
    • Ferris, H.U., Coles, M., Lupas, A.N., Hartmann, M.D., 2014b. Crystallographic snapshot of the Escherichia coli EnvZ histidine kinase in an active conformation. J. Struct. Biol. 186, 376-379.
    • (2014) J. Struct. Biol. , vol.186 , pp. 376-379
    • Ferris, H.U.1    Coles, M.2    Lupas, A.N.3    Hartmann, M.D.4
  • 12
    • 10044222704 scopus 로고    scopus 로고
    • CLANS: a Java application for visualizing protein families based on pairwise similarity
    • Frickey T., Lupas A. CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 2004, 20:3702-3704.
    • (2004) Bioinformatics , vol.20 , pp. 3702-3704
    • Frickey, T.1    Lupas, A.2
  • 14
    • 0344628627 scopus 로고    scopus 로고
    • Historical review: another 50th anniversary-new periodicities in coiled coils
    • Gruber M., Lupas A.N. Historical review: another 50th anniversary-new periodicities in coiled coils. Trends Biochem. Sci. 2003, 28:679-685.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 679-685
    • Gruber, M.1    Lupas, A.N.2
  • 15
    • 0036443868 scopus 로고    scopus 로고
    • Investigating the tolerance of coiled-coil peptides to nonheptad sequence inserts
    • Hicks M.R., Walshaw J., Woolfson D.N. Investigating the tolerance of coiled-coil peptides to nonheptad sequence inserts. J. Struct. Biol. 2002, 137:73-81.
    • (2002) J. Struct. Biol. , vol.137 , pp. 73-81
    • Hicks, M.R.1    Walshaw, J.2    Woolfson, D.N.3
  • 16
    • 0031056669 scopus 로고    scopus 로고
    • Analysis of protein structure in intact cells: crosslinking in vivo between introduced cysteines in the transmembrane domain of a bacterial chemoreceptor
    • Hughson A.G., Lee G.F., Hazelbauer G.L. Analysis of protein structure in intact cells: crosslinking in vivo between introduced cysteines in the transmembrane domain of a bacterial chemoreceptor. Protein Sci. 1997, 6:315-322.
    • (1997) Protein Sci. , vol.6 , pp. 315-322
    • Hughson, A.G.1    Lee, G.F.2    Hazelbauer, G.L.3
  • 18
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch A. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. App. Crystallogr. 1993, 26:795-800.
    • (1993) J. App. Crystallogr. , vol.26 , pp. 795-800
    • Kabsch, A.1
  • 19
    • 0000243829 scopus 로고
    • Procheck - a program to check the stereochemical quality of protein structures
    • Laskowski R.A., Macarthur M.W., Moss D.S., Thornton J.M. Procheck - a program to check the stereochemical quality of protein structures. J. App. Crystallogr. 1993, 26:283-291.
    • (1993) J. App. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    Macarthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 20
    • 0028090254 scopus 로고
    • Deducing the organization of a transmembrane domain by disulfide cross-linking. The bacterial chemoreceptor Trg
    • Lee G.F., Burrows G.G., Lebert M.R., Dutton D.P., Hazelbauer G.L. Deducing the organization of a transmembrane domain by disulfide cross-linking. The bacterial chemoreceptor Trg. J. Biol. Chem. 1994, 269:29920-29927.
    • (1994) J. Biol. Chem. , vol.269 , pp. 29920-29927
    • Lee, G.F.1    Burrows, G.G.2    Lebert, M.R.3    Dutton, D.P.4    Hazelbauer, G.L.5
  • 21
    • 17444424974 scopus 로고    scopus 로고
    • The structure of alpha-helical coiled coils
    • Lupas A.N., Gruber M. The structure of alpha-helical coiled coils. Adv. Protein Chem. 2005, 70:37-78.
    • (2005) Adv. Protein Chem. , vol.70 , pp. 37-78
    • Lupas, A.N.1    Gruber, M.2
  • 22
    • 84855517363 scopus 로고    scopus 로고
    • HAMP domain-mediated signal transduction probed with a mycobacterial adenylyl cyclase as a reporter
    • Mondejar L.G., Lupas A., Schultz A., Schultz J.E. HAMP domain-mediated signal transduction probed with a mycobacterial adenylyl cyclase as a reporter. J. Biol. Chem. 2012, 287:1022-1031.
    • (2012) J. Biol. Chem. , vol.287 , pp. 1022-1031
    • Mondejar, L.G.1    Lupas, A.2    Schultz, A.3    Schultz, J.E.4
  • 26
    • 0026605299 scopus 로고
    • Determination of transmembrane protein structure by disulfide cross-linking: the Escherichia coli Tar receptor
    • Pakula A.A., Simon M.I. Determination of transmembrane protein structure by disulfide cross-linking: the Escherichia coli Tar receptor. Proc. Natl. Acad. Sci. USA 1992, 89:4144-4148.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 4144-4148
    • Pakula, A.A.1    Simon, M.I.2
  • 27
    • 0034843597 scopus 로고    scopus 로고
    • AL2CO: calculation of positional conservation in a protein sequence alignment
    • Pei J., Grishin N.V. AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics 2001, 17:700-712.
    • (2001) Bioinformatics , vol.17 , pp. 700-712
    • Pei, J.1    Grishin, N.V.2
  • 28
    • 82755171841 scopus 로고    scopus 로고
    • Ligand specificity determined by differentially arranged common ligand-binding residues in bacterial amino acid chemoreceptors Tsr and Tar
    • Tajima H., Imada K., Sakuma M., Hattori F., Nara T., Kamo N., Homma M., Kawagishi I. Ligand specificity determined by differentially arranged common ligand-binding residues in bacterial amino acid chemoreceptors Tsr and Tar. J. Biol. Chem. 2011, 286:42200-42210.
    • (2011) J. Biol. Chem. , vol.286 , pp. 42200-42210
    • Tajima, H.1    Imada, K.2    Sakuma, M.3    Hattori, F.4    Nara, T.5    Kamo, N.6    Homma, M.7    Kawagishi, I.8
  • 29
  • 30
  • 31
    • 0030595334 scopus 로고    scopus 로고
    • High-resolution structures of the ligand binding domain of the wild-type bacterial aspartate receptor
    • Yeh J.I., Biemann H.P., Prive G.G., Pandit J., Koshland D.E., Kim S.H. High-resolution structures of the ligand binding domain of the wild-type bacterial aspartate receptor. J. Mol. Biol. 1996, 262:186-201.
    • (1996) J. Mol. Biol. , vol.262 , pp. 186-201
    • Yeh, J.I.1    Biemann, H.P.2    Prive, G.G.3    Pandit, J.4    Koshland, D.E.5    Kim, S.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.