A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins

Journal of Structural Biology

Volumn 170, Issue 2, 2010, Pages 236-245

  Alvarez, Birte Hernandez ^a   Gruber, Markus ^a   Ursinus, Astrid ^a   Dunin Horkawicz, Stanislaw ^a   Lupas, Andrei N ^a   Zeth, Kornelius ^a  

^a MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

Author keywords

Adhesin; Coiled coil; Supercoil transition; Trimeric autotransporter; YadA

Indexed keywords

ADHESIN; ASPARTIC ACID; CARRIER PROTEIN; HYDROGEN; TYROSINE;

ARTICLE; BACTERIAL OUTER MEMBRANE; BACTERIAL VIRULENCE; BIOCHEMISTRY; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; HYDROGEN BOND; MOLECULAR CLONING; NONHUMAN; PERIODICITY; PRIORITY JOURNAL; PROTEIN MOTIF; PROTEIN PURIFICATION; PROTEIN STRUCTURE; PROTEIN TRANSPORT; PROTEOBACTERIA; X RAY CRYSTALLOGRAPHY; YERSINIA;

ADHESINS, BACTERIAL; AMINO ACID SEQUENCE; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT; YERSINIA;

PROTEOBACTERIA; YERSINIA;

EID: 77951974279     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2010.02.009     Document Type: Article

References (32)

1. Conners R., Hill D.J., Borodina E., Agnew C., Daniell S.J., Burton N.M., Sessions R.B., Clarke A.R., Catto L.E., Lammie D., Wess T., Brady R.L., Virji M. The Moraxella adhesin UspA1 binds to its human CEACAM1 receptor by a deformable trimeric coiled-coil. EMBO J. 2008, 27:1779-1789.
2. Cowtan K. Error estimation and bias correction in phase-improvement calculations. Acta Crystallogr. D Biol. Crystallogr. 1999, 55:1555-1567.
3. Crick F.H. The Fourier transform of a coiled-coil. Acta Crystallogr. 1953, 6:685-689.
4. Dvorsky R., Blumenstein L., Vetter I.R., Ahmadian M.R. Structural insights into the interaction of ROCKI with the switch regions of RhoA. J. Biol. Chem. 2004, 279:7098-7104.
5. El Tahir Y., Skurnik M. YadA, the multifaceted Yersinia adhesin. Int. J. Med. Microbiol. 2001, 291:209-218.
6. Emsley P., Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D Biol. Crystallogr. 2004, 60:2126-2132.
7. Guardado-Calvo P., Fox G.C., Llamas-Saiz A.L., van Raaij M.J. Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre. J. Gen. Virol. 2009, 90:672-677.
8. Hartmann M.D., Ridderbusch O., Zeth K., Albrecht R., Testa O., Woolfson D.N., Sauer G., Dunin-Horkawicz S., Lupas A.N., Alvarez B.H. A coiled-coil motif that sequesters ions to the hydrophobic core. Proc. Natl. Acad. Sci. USA 2009, 106:16950-16955.
9. Henderson I.R., Navarro-Garcia F., Desvaux M., Fernandez R.C., Ala'Aldeen D. Type V protein secretion pathway: the autotransporter story. Microbiol. Mol. Biol. Rev. 2004, 68:692-744.
10. Hernandez Alvarez B., Hartmann M.D., Albrecht R., Lupas A.N., Zeth K., Linke D. A new expression system for protein crystallization using trimeric coiled-coil adaptors. Protein Eng. Des. Sel. 2008, 21:11-18.
11. Hoiczyk E., Roggenkamp A., Reichenbecher M., Lupas A., Heesemann J. Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins. EMBO J. 2000, 19:5989-5999.
12. Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 1993, 26:795-800.
13. Kammerer R.A., Schulthess T., Landwehr R., Lustig A., Engel J., Aebi U., Steinmetz M.O. An autonomous folding unit mediates the assembly of two-stranded coiled coils. Proc. Natl. Acad. Sci. USA 1998, 95:13419-13424.
14. Kammerer R.A., Kostrewa D., Progias P., Honnappa S., Avila D., Lustig A., Winkler F.K., Pieters J., Steinmetz M.O. A conserved trimerization motif controls the topology of short coiled coils. Proc. Natl. Acad. Sci. USA 2005, 102:13891-13896.
15. Koretke K.K., Szczesny P., Gruber M., Lupas A.N. Model structure of the prototypical non-fimbrial adhesin YadA of Yersinia enterocolitica. J. Struct. Biol. 2006, 155:154-161.
16. Kuhnel K., Jarchau T., Wolf E., Schlichting I., Walter U., Wittinghofer A., Strelkov S.V. The VASP tetramerization domain is a right-handed coiled coil based on a 15-residue repeat. Proc. Natl. Acad. Sci. USA 2004, 101:17027-17032.
17. Linke D., Riess T., Autenrieth I.B., Lupas A., Kempf V.A. Trimeric autotransporter adhesins: variable structure, common function. Trends Microbiol. 2006, 14:264-270.
18. Meng G., Surana N.K., St Geme J.W., Waksman G. Structure of the outer membrane translocator domain of the Haemophilus influenza Hia trimeric autotransporter. EMBO J. 2006, 25:2297-2304.
19. Muraoka S., Okumura R., Ogawa N., Nonaka T., Miyashita K., Senda T. Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend. J. Mol. Biol. 2003, 328:555-566.
20. Murshudov G.N., Vagin A.A., Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 1997, 53:240-255.
21. Nummelin H., Merckel M.C., Leo J.C., Lankinen H., Skurnik M., Goldman A. The Yersinia adhesin YadA collagen-binding domain structure is a novel left-handed parallel beta-roll. EMBO J. 2004, 23:701-711.
22. Offer G., Hicks M.R., Woolfson D.N. Generalized Crick equations for modeling noncanonical coiled coils. J. Struct. Biol. 2002, 137:41-53.
23. Perrakis A., Morris R., Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 1999, 6:458-463.
24. Peters J., Baumeister W., Lupas A. Hyperthermostable surface layer protein tetrabrachion from the archaebacterium Staphylothermus marinus: evidence for the presence of a right-handed coiled coil derived from the primary structure. J. Mol. Biol. 1996, 257:1031-1041.
25. Potterton E., Briggs P., Turkenburg M., Dodson E. A graphical user interface to the CCP4 program suite. Acta Crystallogr. D Biol. Crystallogr. 2003, 59:1131-1137.
26. Roggenkamp A., Ackermann N., Jacobi C.A., Truelzsch K., Hoffmann H., Heesemann J. Molecular analysis of transport and oligomerization of the Yersinia enterocolitica adhesin YadA. J. Bacteriol. 2003, 185:3735-3744.
27. Sheldrick G.M. A short history of SHELX. Acta Crystallogr A. 2008, 64:112-122.
28. Shimizu T., Ihara K., Maesaki R., Amano M., Kaibuchi K., Hakoshima T. Parallel coiled-coil association of the RhoA-binding domain in Rho-kinase. J. Biol. Chem. 2003, 278:46046-46051.
29. Stathopoulos C., Hendrixson D.R., Thanassi D.G., Hultgren S.J., St.Geme J.W., Curtiss R. Secretion of virulence determinants by the general secretory pathway in gram-negative pathogens: an evolving story. Microbes Infect. 2000, 2:1061-1072.
30. Steinmetz M.O., Stock A., Schulthess T., Landwehr R., Lustig A., Faix J., Gerisch G., Aebi U., Kammerer R.A. A distinct 14 residue site triggers coiled-coil formation in cortexillin I. EMBO J. 1998, 17:1883-1891.
31. Strelkov S.V., Burkhard P. Analysis of alpha-helical coiled coils with the program TWISTER reveals a structural mechanism for stutter compensation. J. Struct. Biol. 2002, 137:54-64.
32. Szczesny P., Lupas A. Domain annotation of trimeric autotransporter adhesins - daTAA. Bioinformatics 2008, 24:1251-1256.