Image-based cell quality assessment: Modeling of cell morphology and quality for clinical cell therapy

Studies in Mechanobiology, Tissue Engineering and Biomaterials

Volumn 10, Issue , 2013, Pages 207-226

  Sasaki, Hiroto ^a   Matsuoka, Fumiko ^a   Yamamoto, Wakana ^a   Kojima, Kenji ^a   Honda, Hiroyuki ^a   Kato, Ryuji ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Cell Quality; Cellular Image; Decision Tree Model; Discriminant Function Analysis; Fiber Breadth

Indexed keywords

EID: 84901604205     PISSN: 18682006     EISSN: 18682014     Source Type: Book Series    
DOI: 10.1007/8415_2012_132     Document Type: Chapter

References (26)

1. Carpenter, A.E., Jones, T.R., Lamprecht, M.R., Clarke, C., Kang, I.H., Friman, O., Guertin, D.A., Chang, J.H., Lindquist, R.A., Moffat, J., Golland, P., Sabatini, D.M.: CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol. 7, R100 (2006)
2. Ebisawa, K., Kato, R., Okada, M., Sugimura, T., Latif, M.A., Hori, Y., Narita, Y., Ueda, M., Honda, H., Kagami, H.: Gingival and dermal fibroblasts: their similarities and differences revealed from gene expression. J. Biosci. Bioeng. 111, 255–258 (2011)
3. Galon, J., Costes, A., Sanchez-Cabo, F., Kirilovsky, A., Mlecnik, B., Lagorce-Pages, C., Tosolini, M., Camus, M., Berger, A., Wind, P., Zinzindohoue, F., Bruneval, P., Cugnenc, P.H., Trajanoski, Z., Fridman, W.H., Pages, F.: Type, density, and location of immune cells within human colorectal tumors predict clinical outcome. 313, 1960–1964 (2006)
4. Harder, N., Mora-Bermudez, F., Godinez, W.J., Wunsche, A., Eils, R., Ellenberg, J., Rohr, K.: Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time. Genome Res. 19, 2113–2124 (2009)
5. Held, M., Schmitz, M.H., Fischer, B., Walter, T., Neumann, B., Olma, M.H., Peter, M., Ellenberg, J., Gerlich, D.W.: CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging. Nat. Methods 7, 747–754 (2010)
6. Jones, T.R., Carpenter, A.E., Lamprecht, M.R., Moffat, J., Silver, S.J., Grenier, J.K., Castoreno, A.B., Eggert, U.S., Root, D.E., Golland, P., Sabatini, D.M.: Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning. Proc. Natl. Acad. Sci. U S A. 106, 1826–1831 (2009)
7. Kagami, H., Agata, H., Kato, R., Matsuoka, F., Tojo, A.: Fundamental technological developments Required for increased availability of tissue engineering. InTech (2010)
8. Kamentsky, L., Jones, T.R., Fraser, A., Bray, M.A., Logan, D.J., Madden, K.L., Ljosa, V., Rueden, C., Eliceiri, K.W., Carpenter, A.E.: Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. Bioinformatics 15, 1179–1180 (2011)
9. Kino-oka, M., Agatahama, Y., Haga, Y., Inoie, M., Taya, M.: Long-term subculture of human keratinocytes under an anoxic condition. J. Biosci. Bioeng. 100, 119–122 (2005)
10. Kirillov, V., Stebenyaeva, E., Paplevka, A., Demidchik, E.: A rapid method for diagnosing regional metastases of papillary thyroid cancer with morphometry. Microsc. Res. Tech. 69, 721–728 (2006)
11. Kittler, R., Pelletier, L., Heninger, A.K., Slabicki, M., Theis, M., Miroslaw, L., Poser, I., Lawo, S., Grabner, H., Kozak, K., Wagner, J., Surendranath, V., Richter, C., Bowen, W., Jackson, A.L., Habermann, B., Hyman, A.A., Buchholz, F.: Genome-scale RNAi profiling of cell division in human tissue culture cells. Nat. Cell. Biol. 9, 1401–1412 (2007)
12. Kurz, D.J., Decary, S., Hong, Y., Erusalimsky, J.D.: Senescence-associated (beta)-galactosidase reflects an increase in lysosomal mass during replicative ageing of human endothelial cells. J. Cell Sci. 113 (Pt 20), 3613–3622 (2000)
13. Logan. D.J., Carpenter. A.E.: Screening cellular feature measurements for image-based assay development. J. Biomol. Screen. 15, 840–846 (2010)
14. Maekawa, M., Yamanaka, S.: Glis1, unique pro-reprogramming factor, may facilitate clinical applications of iPSC technology. Nature 474, 225–229 (2011)
15. Misselwitz, B., Strittmatter, G., Periaswamy, B., Schlumberger, M.C., Rout, S., Horvath, P., Kozak, K., Hardt, W.D.: Enhanced CellClassifier: a multi-class classification tool for microscopy images. BMC Bioinformatics. 11, 30 (2010)
16. Nafe, R., Franz, K., Schlote, W., Schneider, B.: Morphology of tumor cell nuclei is significantly related with survival time of patients with glioblastomas. Clin. Cancer Res. 11, 2141–2148 (2005)
17. Narkilahti, S., Rajala, K., Pihlajamaki, H., Suuronen, R., Hovatta, O., Skottman, H.: Monitoring and analysis of dynamic growth of human embryonic stem cells: comparison of automated instrumentation and conventional culturing methods. Biomed. Eng. Online 6, 11 (2007)
18. Neumann, B., Held, M., Liebel, U., Erfle, H., Rogers, P., Pepperkok, R., Ellenberg, J.: High-throughput RNAi screening by time-lapse imaging of live human cells. Nat. Methods 3, 385–390 (2006)
19. Sekiya, I., Larson, B.L., Smith, J.R., Pochampally, R., Cui, J.G., Prockop, D.J.: Expansion of human adult stem cells from bone marrow stroma: conditions that maximize the yields of early progenitors and evaluate their quality. Stem Cells 20, 530–541 (2002)
20. Simpson, K.J., Selfors, L.M., Bui, J., Reynolds, A., Leake, D., Khvorova, A., Brugge, J.S.: Identification of genes that regulate epithelial cell migration using an siRNA screening approach. Nat. Cell Biol. 10, 1027–1038 (2008)
21. Takagi, M.: Noninvasive quality estimation of adherent mammalian cells for transplantation. Biotech. Bioproc. Eng. 15, 54–60 (2010)
22. Tokumitsu, A., Wakitani, S., Takagi, M.: Noninvasive discrimination of human normal cells and malignant tumor cells by phase-shifting laser microscopy. J. Biosci. Bioeng. 109, 499–503 (2010)
23. Treiser, M.D., Yang, E.H., Gordonov, S., Cohen, D.M., Androulakis, I.P., Kohn, J., Chen, C.S., Moghe, P.V.: Cytoskeleton-based forecasting of stem cell lineage fates. Proc. Natl. Acad. Sci. U S A 107, 610–615 (2010)
24. Umegaki, R., Murai, K., Kino-Oka, M., Taya, M.: Correlation of cellular life span with growth parameters observed in successive cultures of human keratinocytes. J. Biosci. Bioeng. 94, 231–236 (2002)
25. Watson, D., Keller, G.S., Lacombe, V., Fodor, P.B., Rawnsley, J., Lask, G.P.: Autologous fibroblasts for treatment of facial rhytids and dermal depressions. A pilot study. Arch. Facial Plast. Surg. 1, 165–170 (1999)
26. Zhou, X., Cao, X., Perlman, Z., Wong, S.T.: A computerized cellular imaging system for high content analysis in Monastrol suppressor screens. J. Biomed. Inform. 39, 115–125 (2006)