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Volumn 14, Issue 1, 2014, Pages

The effects of chemical interactions and culture history on the colonization of structured habitats by competing bacterial populations

Author keywords

Bacterial competition; Collective behavior; Habitat colonization; Microbes; Microfluidics; Spatially structured habitats

Indexed keywords

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL STRAIN; BACTERIUM CULTURE; CHEMICAL INTERACTION; COCULTURE; ESCHERICHIA COLI; FLUORESCENCE MICROSCOPY; HABITAT; HABITAT STRUCTURE; INOCULATION; LANDSCAPE; MICROTECHNOLOGY; MOLECULAR INTERACTION; NONHUMAN; POPULATION DISTRIBUTION; TRAVEL;

EID: 84901585888     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-14-116     Document Type: Article
Times cited : (22)

References (56)
  • 1
    • 45549085296 scopus 로고    scopus 로고
    • Predictive behavior within microbial genetic networks
    • DOI 10.1126/science.1154456
    • Predictive behavior within microbial genetic networks. Tagkopoulos I, Liu YC, Tavazoie S, Science 2008 320 1313 1317 10.1126/science.1154456 18467556 (Pubitemid 351929462)
    • (2008) Science , vol.320 , Issue.5881 , pp. 1313-1317
    • Tagkopoulos, I.1    Liu, Y.-C.2    Tavazoie, S.3
  • 2
    • 0014013196 scopus 로고
    • Chemotaxis in bacteria
    • 10.1126/science.153.3737.708 4957395
    • Chemotaxis in bacteria. Adler J, Science 1966 153 708 716 10.1126/science.153.3737.708 4957395
    • (1966) Science , vol.153 , pp. 708-716
    • Adler, J.1
  • 3
    • 0014692237 scopus 로고
    • Chemoreceptors in bacteria
    • 10.1126/science.166.3913.1588 4902679
    • Chemoreceptors in bacteria. Adler J, Science 1969 166 1588 1597 10.1126/science.166.3913.1588 4902679
    • (1969) Science , vol.166 , pp. 1588-1597
    • Adler, J.1
  • 4
    • 0016691917 scopus 로고
    • Bacterial behaviour
    • 10.1038/254389a0 1090851
    • Bacterial behaviour. Berg HC, Nature 1975 254 389 392 10.1038/254389a0 1090851
    • (1975) Nature , vol.254 , pp. 389-392
    • Berg, H.C.1
  • 5
    • 0037123780 scopus 로고    scopus 로고
    • Small talk: Cell-to-cell communication in bacteria
    • DOI 10.1016/S0092-8674(02)00749-3
    • Small talk. Cell-to-cell communication in bacteria. Bassler BL, Cell 2002 109 421 424 10.1016/S0092-8674(02)00749-3 12086599 (Pubitemid 34564469)
    • (2002) Cell , vol.109 , Issue.4 , pp. 421-424
    • Bassler, B.L.1
  • 6
    • 0013934454 scopus 로고
    • Effect of amino acids and oxygen on chemotaxis in escherichia coli
    • 5328747
    • Effect of amino acids and oxygen on chemotaxis in escherichia coli. Adler J, J Bacteriol 1966 92 121 129 5328747
    • (1966) J Bacteriol , vol.92 , pp. 121-129
    • Adler, J.1
  • 7
    • 0026023209 scopus 로고
    • Complex patterns formed by motile cells of Escherichia coli
    • Complex patterns formed by motile cells of escherichia coli. Budrene EO, Berg HC, Nature 1991 349 630 633 10.1038/349630a0 2000137 (Pubitemid 21912121)
    • (1991) Nature , vol.349 , Issue.6310 , pp. 630-633
    • Budrene, E.O.1    Berg, H.C.2
  • 8
    • 0029023398 scopus 로고
    • Dynamics of formation of symmetrical patterns by chemotactic bacteria
    • 10.1038/376049a0 7596432
    • Dynamics of formation of symmetrical patterns by chemotactic bacteria. Budrene EO, Berg HC, Nature 1995 376 49 53 10.1038/376049a0 7596432
    • (1995) Nature , vol.376 , pp. 49-53
    • Budrene, E.O.1    Berg, H.C.2
  • 9
    • 0028940607 scopus 로고
    • Tar-dependent and -independent pattern formation by Salmonella typhimurium
    • 7896688
    • Tar-dependent and -independent pattern formation by Salmonella typhimurium. Blat Y, Eisenbach M, J Bacteriol 1995 177 1683 1691 7896688
    • (1995) J Bacteriol , vol.177 , pp. 1683-1691
    • Blat, Y.1    Eisenbach, M.2
  • 11
    • 0000510478 scopus 로고
    • Fractal growth of Bacillus subtilison agar plates
    • 10.1143/JPSJ.58.3875
    • Fractal growth of Bacillus subtilison agar plates. Fujikawa H, Matsushita M, J Physical Soc Japan 1989 58 3875 3878 10.1143/JPSJ.58.3875
    • (1989) J Physical Soc Japan , vol.58 , pp. 3875-3878
    • Fujikawa, H.1    Matsushita, M.2
  • 12
    • 44949291022 scopus 로고
    • Diffusion-limited growth in bacterial colony formation
    • 10.1016/0378-4371(90)90402-E
    • Diffusion-limited growth in bacterial colony formation. Matsushita M, Fujikawa H, Physica A 1990 168 498 506 10.1016/0378-4371(90)90402-E
    • (1990) Physica A , vol.168 , pp. 498-506
    • Matsushita, M.1    Fujikawa, H.2
  • 13
    • 0028183962 scopus 로고
    • Generic modelling of cooperative growth patterns in bacterial colonies
    • 10.1038/368046a0 8107881
    • Generic modelling of cooperative growth patterns in bacterial colonies. Ben-Jacob E, Schochet O, Tenenbaum A, Cohen I, Czirók A, Vicsek T, Nature 1994 368 46 49 10.1038/368046a0 8107881
    • (1994) Nature , vol.368 , pp. 46-49
    • Ben-Jacob, E.1    Schochet, O.2    Tenenbaum, A.3    Cohen, I.4    Czirók, A.5    Vicsek, T.6
  • 14
    • 0031939962 scopus 로고    scopus 로고
    • Classification and genetic characterization of pattern-forming bacilli
    • DOI 10.1046/j.1365-2958.1998.00717.x
    • Classification and genetic characterization of pattern-forming Bacilli. Rudner R, Martsinkevich O, Leung W, Jarvis ED, Mol Microbiol 1998 27 687 703 10.1046/j.1365-2958.1998.00717.x 9515696 (Pubitemid 28081979)
    • (1998) Molecular Microbiology , vol.27 , Issue.4 , pp. 687-703
    • Rudner, R.1    Martsinkevich, O.2    Leung, W.3    Jarvis, E.D.4
  • 15
    • 0026550274 scopus 로고
    • Self-similar colony morphogenesis by gram-negative rods as the experimental model of fractal growth by a cell population
    • 1599243
    • Self-similar colony morphogenesis by gram-negative rods as the experimental model of fractal growth by a cell population. Matsuyama T, Matsushita M, Appl Environ Microbiol 1992 58 1227 1232 1599243
    • (1992) Appl Environ Microbiol , vol.58 , pp. 1227-1232
    • Matsuyama, T.1    Matsushita, M.2
  • 16
    • 0002552501 scopus 로고
    • Communication, regulation and control during complex patterning of bacterial colonies
    • 10.1142/S0218348X9400003X
    • Communication, regulation and control during complex patterning of bacterial colonies. Ben-Jacob E, Shochet O, Tenenbaum A, Cohen I, Czirók A, Vicsek T, Fractals 1994 02 15 44 10.1142/S0218348X9400003X
    • (1994) Fractals , vol.2 , pp. 15-44
    • Ben-Jacob, E.1    Shochet, O.2    Tenenbaum, A.3    Cohen, I.4    Czirók, A.5    Vicsek, T.6
  • 17
    • 0002210190 scopus 로고
    • Bacterial fractal growth in the concentration field of nutrient
    • 10.1143/JPSJ.60.88
    • Bacterial fractal growth in the concentration field of nutrient. Fujikawa H, Matsushita M, J Physical Soc Japan 1991 60 88 94 10.1143/JPSJ.60.88
    • (1991) J Physical Soc Japan , vol.60 , pp. 88-94
    • Fujikawa, H.1    Matsushita, M.2
  • 18
    • 0000973850 scopus 로고
    • Morphological changes in growth phenomena of bacterial colony patterns
    • 10.1143/JPSJ.61.816
    • Morphological changes in growth phenomena of bacterial colony patterns. Ohgiwari M, Matsushita M, Matsuyama T, J Physical Soc Japan 1992 61 816 822 10.1143/JPSJ.61.816
    • (1992) J Physical Soc Japan , vol.61 , pp. 816-822
    • Ohgiwari, M.1    Matsushita, M.2    Matsuyama, T.3
  • 19
    • 84956267423 scopus 로고
    • From the dynamics of population autowaves generated by living cells to neuroinformatics
    • 10.1070/PU1994v037n10ABEH000049
    • From the dynamics of population autowaves generated by living cells to neuroinformatics. Ivanitskii GR, Medvinskii AB, Tsyganov MA, Physics-Uspekhi 1994 37 961 990 10.1070/PU1994v037n10ABEH000049
    • (1994) Physics-Uspekhi , vol.37 , pp. 961-990
    • Ivanitskii, G.R.1    Medvinskii, A.B.2    Tsyganov, M.A.3
  • 20
    • 0020468896 scopus 로고
    • Organic-matter and water-stable aggregates in soils
    • 10.1111/j.1365-2389.1982.tb01755.x
    • Organic-matter and water-stable aggregates in soils. Tisdall J, Oades J, Eur J Soil Sci 1982 33 141 163 10.1111/j.1365-2389.1982.tb01755.x
    • (1982) Eur J Soil Sci , vol.33 , pp. 141-163
    • Tisdall, J.1    Oades, J.2
  • 21
    • 2142704282 scopus 로고    scopus 로고
    • Spatial scales of soil bacterial diversity - The size of a clone
    • DOI 10.1016/j.femsec.2004.01.010, PII S0168649604000467
    • Spatial scales of soil bacterial diversity-the size of a clone. Grundmann GL, FEMS Microbiol Ecol 2004 48 119 127 10.1016/j.femsec.2004.01.010 19712395 (Pubitemid 38553955)
    • (2004) FEMS Microbiology Ecology , vol.48 , Issue.2 , pp. 119-127
    • Grundmann, G.L.1
  • 23
    • 0037447853 scopus 로고    scopus 로고
    • Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil
    • DOI 10.1016/S0168-6496(03)00027-8
    • Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil. Nunan N, Wu K, Young IM, Crawford JW, Ritz K, FEMS Microbiol Ecol 2003 44 203 215 10.1016/S0168-6496(03)00027-8 19719637 (Pubitemid 36423415)
    • (2003) FEMS Microbiology Ecology , vol.44 , Issue.2 , pp. 203-215
    • Nunan, N.1    Wu, K.2    Young, I.M.3    Crawford, J.W.4    Ritz, K.5
  • 24
    • 65449128399 scopus 로고    scopus 로고
    • Patterns and scales in gastrointestinal microbial ecology
    • 10.1053/j.gastro.2009.02.075 19457423
    • Patterns and scales in gastrointestinal microbial ecology. Camp JG, Kanther M, Semova I, Rawls JF, Gastroenterology 2009 136 1989 2002 10.1053/j.gastro.2009.02.075 19457423
    • (2009) Gastroenterology , vol.136 , pp. 1989-2002
    • Camp, J.G.1    Kanther, M.2    Semova, I.3    Rawls, J.F.4
  • 25
    • 0034044522 scopus 로고    scopus 로고
    • Microecology of the termite gut: Structure and function on a microscale
    • DOI 10.1016/S1369-5274(00)00087-4
    • Microecology of the termite gut: structure and function on a microscale. Brune A, Friedrich M, Curr Opin Microbiol 2000 3 263 269 10.1016/S1369-5274(00) 00087-4 10851155 (Pubitemid 30368059)
    • (2000) Current Opinion in Microbiology , vol.3 , Issue.3 , pp. 263-269
    • Brune, A.1    Friedrich, M.2
  • 26
    • 15544369658 scopus 로고    scopus 로고
    • Host-bacterial mutualism in the human intestine
    • DOI 10.1126/science.1104816
    • Host-bacterial mutualism in the human intestine. Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI, Science 2005 307 1915 1920 10.1126/science.1104816 15790844 (Pubitemid 40404694)
    • (2005) Science , vol.307 , Issue.5717 , pp. 1915-1920
    • Backhed, F.1    Ley, R.E.2    Sonnenburg, J.L.3    Peterson, D.A.4    Gordon, J.I.5
  • 27
    • 0004211336 scopus 로고    scopus 로고
    • San Diego: Academic Press Hanski IA, Gilpen ME
    • Metapopulation Biology San Diego: Academic Press, Hanski IA, Gilpen ME, 1997
    • (1997) Metapopulation Biology
  • 30
    • 80053639689 scopus 로고    scopus 로고
    • Directional persistence of chemotactic bacteria in a traveling concentration wave
    • 10.1073/pnas.1101996108 21918111
    • Directional persistence of chemotactic bacteria in a traveling concentration wave. Saragosti J, Calvez V, Bournaveas N, Perthame B, Buguin A, Silberzan P, Proc Natl Acad Sci U S A 2011 108 16235 16240 10.1073/pnas. 1101996108 21918111
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 16235-16240
    • Saragosti, J.1    Calvez, V.2    Bournaveas, N.3    Perthame, B.4    Buguin, A.5    Silberzan, P.6
  • 31
    • 78149242494 scopus 로고    scopus 로고
    • Microfluidics for bacterial chemotaxis
    • 10.1039/c0ib00049c
    • Microfluidics for bacterial chemotaxis. Ahmed T, Shimizu TS, Stocker R, Integr Biol 2010 2 604 629 10.1039/c0ib00049c
    • (2010) Integr Biol , vol.2 , pp. 604-629
    • Ahmed, T.1    Shimizu, T.S.2    Stocker, R.3
  • 35
    • 84886003327 scopus 로고    scopus 로고
    • Spatial structure facilitates cooperation in a social dilemma: Empirical evidence from a bacterial community
    • 10.1371/journal.pone.0077042 24167557
    • Spatial structure facilitates cooperation in a social dilemma: empirical evidence from a bacterial community. Hol FJH, Galajda P, Nagy K, Woolthuis RG, Dekker C, Keymer JE, PLoS ONE 2013 8 77042 10.1371/journal.pone.0077042 24167557
    • (2013) PLoS ONE , vol.8 , pp. 577042
    • Hol, F.J.H.1    Galajda, P.2    Nagy, K.3    Woolthuis, R.G.4    Dekker, C.5    Keymer, J.E.6
  • 37
    • 58749097630 scopus 로고    scopus 로고
    • Resource patch formation and exploitation throughout the marine microbial food web
    • 10.1086/593004 19053839
    • Resource patch formation and exploitation throughout the marine microbial food web. Seymour JR, Marcos SR, Am Nat 2009 173 15 29 10.1086/593004 19053839
    • (2009) Am Nat , vol.173 , pp. 515-529
    • Seymour, J.R.1    Marcos, S.R.2
  • 39
    • 0002494543 scopus 로고
    • Formation of stationary demarcation zones between population autowaves propagating towards each other
    • 10.1016/0167-2789(93)90259-4
    • Formation of stationary demarcation zones between population autowaves propagating towards each other. Medvinsky AB, Tsyganov MA, Shakhbazian VY, Kresteva IB, Ivanitsky GR, Physica D 1993 64 267 280 10.1016/0167-2789(93)90259- 4
    • (1993) Physica D , vol.64 , pp. 267-280
    • Medvinsky, A.B.1    Tsyganov, M.A.2    Shakhbazian, V.Y.3    Kresteva, I.B.4    Ivanitsky, G.R.5
  • 40
    • 34250682211 scopus 로고    scopus 로고
    • Solitonlike and nonsoliton modes of interaction of taxis waves (illustrated with an example of bacterial population waves)
    • DOI 10.1134/S0006350906060066
    • Solitonlike and nonsoliton modes of interaction of taxis waves (illustrated with an example of bacterial population waves). Tsyganov MA, Ivanitsky GR, Biophysics 2006 51 887 891 10.1134/S0006350906060066 (Pubitemid 46941100)
    • (2006) Biophysics , vol.51 , Issue.6 , pp. 887-891
    • Tsyganov, M.A.1    Ivanitsky, G.R.2
  • 42
    • 58149481224 scopus 로고    scopus 로고
    • Computation of mutual fitness by competing bacteria
    • 10.1073/pnas.0810792105 19074280
    • Computation of mutual fitness by competing bacteria. Keymer JE, Galajda P, Lambert G, Liao D, Austin RH, Proc Natl Acad Sci U S A 2008 105 20269 20273 10.1073/pnas.0810792105 19074280
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 20269-20273
    • Keymer, J.E.1    Galajda, P.2    Lambert, G.3    Liao, D.4    Austin, R.H.5
  • 43
  • 44
    • 70349301458 scopus 로고    scopus 로고
    • Bacterial growth and motility in sub-micron constrictions
    • 10.1073/pnas.0907542106 19706420
    • Bacterial growth and motility in sub-micron constrictions. Männik J, Driessen R, Galajda P, Keymer JE, Dekker C, Proc Natl Acad Sci U S A 2009 106 14861 14866 10.1073/pnas.0907542106 19706420
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 14861-14866
    • Männik, J.1    Driessen, R.2    Galajda, P.3    Keymer, J.E.4    Dekker, C.5
  • 45
    • 33747114035 scopus 로고    scopus 로고
    • Self-engineering capabilities of bacteria
    • DOI 10.1098/rsif.2005.0089
    • Self-engineering capabilities of bacteria. Ben-Jacob E, Levine H, J R Soc Interface 2006 3 197 214 10.1098/rsif.2005.0089 16849231 (Pubitemid 46682218)
    • (2006) Journal of the Royal Society Interface , vol.3 , Issue.6 , pp. 197-214
    • Ben-Jacob, E.1    Levine, H.2
  • 46
    • 79952908235 scopus 로고    scopus 로고
    • Models of self-organizing bacterial communities and comparisons with experimental observations
    • 10.1051/mmnp/20105107
    • Models of self-organizing bacterial communities and comparisons with experimental observations. Marrocco A, Henry H, Holland IB, Plapp M, Séror SJ, Perthame B, Math Model Nat Phenom 2010 5 148 162 10.1051/mmnp/20105107
    • (2010) Math Model Nat Phenom , vol.5 , pp. 148-162
    • Marrocco, A.1    Henry, H.2    Holland, I.B.3    Plapp, M.4    Séror, S.J.5    Perthame, B.6
  • 49
    • 47249086111 scopus 로고    scopus 로고
    • Genetic determinants of self identity and social recognition in bacteria
    • DOI 10.1126/science.1160033
    • Genetic determinants of self identity and social recognition in bacteria. Gibbs KA, Urbanowski ML, Greenberg EP, Science 2008 321 256 259 10.1126/science.1160033 18621670 (Pubitemid 351989098)
    • (2008) Science , vol.321 , Issue.5886 , pp. 256-259
    • Gibbs, K.A.1    Urbanowski, M.L.2    Greenberg, E.P.3
  • 50
    • 79956070923 scopus 로고    scopus 로고
    • Non-genetic heterogeneity and cell fate choice in Dictyostelium discoideum
    • 10.1111/j.1440-169X.2011.01270.x 21585359
    • Non-genetic heterogeneity and cell fate choice in Dictyostelium discoideum. Chattwood A, Thompson CRL, Dev Growth Differ 2011 53 558 566 10.1111/j.1440-169X.2011.01270.x 21585359
    • (2011) Dev Growth Differ , vol.53 , pp. 558-566
    • Chattwood, A.1    Thompson, C.R.L.2
  • 51
    • 0014748565 scopus 로고
    • Initiation of slime mold aggregation viewed as an instability
    • 10.1016/0022-5193(70)90092-5 5462335
    • Initiation of slime mold aggregation viewed as an instability. Keller EF, Segel LA, J Theor Biol 1970 26 399 415 10.1016/0022-5193(70)90092-5 5462335
    • (1970) J Theor Biol , vol.26 , pp. 399-415
    • Keller, E.F.1    Segel, L.A.2
  • 52
    • 0031897383 scopus 로고    scopus 로고
    • Physical mechanisms for chemotactic pattern formation by bacteria
    • Physical mechanisms for chemotactic pattern formation by bacteria. Brenner MP, Levitov LS, Budrene EO, Biophysical J 1998 74 1677 1693 10.1016/S0006-3495(98)77880-4 (Pubitemid 28157908)
    • (1998) Biophysical Journal , vol.74 , Issue.4 , pp. 1677-1693
    • Brenner, M.P.1    Levitov, L.S.2    Budrene, E.O.3
  • 54
    • 33644754928 scopus 로고    scopus 로고
    • Bethesda, Maryland, USA: National Institutes of Health
    • Rasband W, ImageJ, U.S Bethesda, Maryland, USA: National Institutes of Health 1997-2012 http://imagej.nih.gov/ij/
    • (1997) ImageJ, U.S
    • Rasband, W.1
  • 55
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team Vienna, Austria: R Foundation for Statistical Computing
    • R Core Team, R: A Language and Environment for Statistical Computing Vienna, Austria: R Foundation for Statistical Computing 2012 http://www.R-project.org
    • (2012) R: A Language and Environment for Statistical Computing
  • 56
    • 84901589943 scopus 로고    scopus 로고
    • The effects of chemical interactions and culture history on the colonization of structured habitats by competing bacterial populations
    • doi:10.4121/uuid:f5603abf-bf15-4732-84c0-a413ce7d12d3
    • The effects of chemical interactions and culture history on the colonization of structured habitats by competing bacterial populations. van Vliet S, Hol FJH, Weenink T, Galajda P, Keymer JE, Data Set 2014 doi:10.4121/uuid:f5603abf-bf15-4732-84c0-a413ce7d12d3
    • (2014) Data Set
    • Van Vliet, S.1    Hol, F.J.H.2    Weenink, T.3    Galajda, P.4    Keymer, J.E.5


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