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Volumn 15, Issue 1, 2014, Pages

Genomic analysis of the emergence of 20th century epidemic dysentery

Author keywords

Antibiotic resistance; Dysentery; Genome evolution; Genomic adaptation; Human carrier; Pandemic; Phylogeny; Shigella dysenteriae

Indexed keywords

BACITRACIN; CEFTAZIDIME; CEPHALOSPORIN; CHLORAMPHENICOL; CLOXACILLIN; MACROLIDE; PENICILLIN DERIVATIVE; SPECTINOMYCIN; STREPTOMYCIN; SULFONAMIDE; TETRACYCLINE; ANTIINFECTIVE AGENT;

EID: 84901487927     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-355     Document Type: Article
Times cited : (21)

References (64)
  • 2
    • 0344552456 scopus 로고    scopus 로고
    • Multidrug-resistant Shigella dysenteriae type 1 in south Asia
    • 10.1016/S1473-3099(03)00829-6, 14652200
    • Bhattacharya SK, Sarkar K, Balakrish Nair G, Faruque AS, Sack DA. Multidrug-resistant Shigella dysenteriae type 1 in south Asia. Lancet Infect Dis 2003, 3(12):755. 10.1016/S1473-3099(03)00829-6, 14652200.
    • (2003) Lancet Infect Dis , vol.3 , Issue.12 , pp. 755
    • Bhattacharya, S.K.1    Sarkar, K.2    Balakrish Nair, G.3    Faruque, A.S.4    Sack, D.A.5
  • 3
    • 34250353445 scopus 로고    scopus 로고
    • Clinical trials of Shigella vaccines: two steps forward and one step back on a long, hard road
    • 10.1038/nrmicro1662, 3771495, 17558427
    • Levine MM, Kotloff KL, Barry EM, Pasetti MF, Sztein MB. Clinical trials of Shigella vaccines: two steps forward and one step back on a long, hard road. Nat Rev Microbiol 2007, 5(7):540-553. 10.1038/nrmicro1662, 3771495, 17558427.
    • (2007) Nat Rev Microbiol , vol.5 , Issue.7 , pp. 540-553
    • Levine, M.M.1    Kotloff, K.L.2    Barry, E.M.3    Pasetti, M.F.4    Sztein, M.B.5
  • 4
    • 0033496732 scopus 로고    scopus 로고
    • Dr. Kiyoshi Shiga: discoverer of the dysentery bacillus
    • 10.1086/313437, 10524979
    • Trofa AF, Ueno-Olsen H, Oiwa R, Yoshikawa M. Dr. Kiyoshi Shiga: discoverer of the dysentery bacillus. Clin Infect Dis 1999, 29(5):1303-1306. 10.1086/313437, 10524979.
    • (1999) Clin Infect Dis , vol.29 , Issue.5 , pp. 1303-1306
    • Trofa, A.F.1    Ueno-Olsen, H.2    Oiwa, R.3    Yoshikawa, M.4
  • 5
    • 19344366789 scopus 로고    scopus 로고
    • Shigellosis
    • Niyogi SK. Shigellosis. J Microbiol 2005, 43(2):133-143.
    • (2005) J Microbiol , vol.43 , Issue.2 , pp. 133-143
    • Niyogi, S.K.1
  • 6
    • 0026433101 scopus 로고
    • Shigella dysenteriae type 1--Guatemala, 1991
    • 427-428.
    • Shigella dysenteriae type 1--Guatemala, 1991. MMWR Morb Mortal Wkly Rep 1991, 40(25):421. 427-428. http://www.cdc.gov/mmwr/preview/mmwrhtml/00014537.htm.
    • (1991) MMWR Morb Mortal Wkly Rep , vol.40 , Issue.25 , pp. 421
  • 7
    • 0032558303 scopus 로고    scopus 로고
    • Enterohaemorrhagic Escherichia coli in Ngoila (Cameroon) during an outbreak of bloody diarrhoea
    • Germani Y, Cunin P, Tedjouka E, Ncharre CB, Morvan J, Martin P. Enterohaemorrhagic Escherichia coli in Ngoila (Cameroon) during an outbreak of bloody diarrhoea. Lancet 1998, 352(9128):625-626.
    • (1998) Lancet , vol.352 , Issue.9128 , pp. 625-626
    • Germani, Y.1    Cunin, P.2    Tedjouka, E.3    Ncharre, C.B.4    Morvan, J.5    Martin, P.6
  • 8
    • 35349009236 scopus 로고    scopus 로고
    • Risk areas and neighborhood-level risk factors for Shigella dysenteriae 1 and Shigella flexneri
    • 10.1016/j.healthplace.2007.05.004, 17602851
    • Emch M, Ali M, Yunus M. Risk areas and neighborhood-level risk factors for Shigella dysenteriae 1 and Shigella flexneri. Health Place 2008, 14(1):96-105. 10.1016/j.healthplace.2007.05.004, 17602851.
    • (2008) Health Place , vol.14 , Issue.1 , pp. 96-105
    • Emch, M.1    Ali, M.2    Yunus, M.3
  • 9
    • 0034641731 scopus 로고    scopus 로고
    • Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
    • 10.1073/pnas.180094797, 27065, 10954745
    • Pupo GM, Lan R, Reeves PR. Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc Natl Acad Sci U S A 2000, 97(19):10567-10572. 10.1073/pnas.180094797, 27065, 10954745.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , Issue.19 , pp. 10567-10572
    • Pupo, G.M.1    Lan, R.2    Reeves, P.R.3
  • 10
    • 0036754331 scopus 로고    scopus 로고
    • Escherichia coli in disguise: molecular origins of Shigella
    • 10.1016/S1286-4579(02)01637-4, 12361912
    • Lan R, Reeves PR. Escherichia coli in disguise: molecular origins of Shigella. Microbes Infect 2002, 4(11):1125-1132. 10.1016/S1286-4579(02)01637-4, 12361912.
    • (2002) Microbes Infect , vol.4 , Issue.11 , pp. 1125-1132
    • Lan, R.1    Reeves, P.R.2
  • 12
    • 84870821244 scopus 로고    scopus 로고
    • Antivirulence genes: insights into pathogen evolution through gene loss
    • 10.1128/IAI.00740-12, 3497401, 23045475
    • Bliven KA, Maurelli AT. Antivirulence genes: insights into pathogen evolution through gene loss. Infect Immun 2012, 80(12):4061-4070. 10.1128/IAI.00740-12, 3497401, 23045475.
    • (2012) Infect Immun , vol.80 , Issue.12 , pp. 4061-4070
    • Bliven, K.A.1    Maurelli, A.T.2
  • 13
    • 0242286557 scopus 로고    scopus 로고
    • Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence
    • 10.1128/IAI.71.11.6298-6306.2003, 219609, 14573649
    • Lan R, Stevenson G, Reeves PR. Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence. Infect Immun 2003, 71(11):6298-6306. 10.1128/IAI.71.11.6298-6306.2003, 219609, 14573649.
    • (2003) Infect Immun , vol.71 , Issue.11 , pp. 6298-6306
    • Lan, R.1    Stevenson, G.2    Reeves, P.R.3
  • 15
    • 33749264247 scopus 로고    scopus 로고
    • Geneva: World Health Organization, World Health Organization. Dept. of Immunization Vaccines and Biologicals
    • World Health Organization. Dept. of Immunization Vaccines and Biologicals Guidelines for the control of shigellosis, including epidemics due to Shigella dysenteriae type 1 2005, Geneva: World Health Organization, World Health Organization. Dept. of Immunization Vaccines and Biologicals.
    • (2005) Guidelines for the control of shigellosis, including epidemics due to Shigella dysenteriae type 1
  • 16
    • 0014849872 scopus 로고
    • Epidemic Shiga bacillus dysentery in Central America. I. Etiologic investigations in Guatemala, 1969
    • 10.1093/infdis/122.3.170, 4915510
    • Mata LJ, Gangarosa EJ, Caceres A, Perera DR, Mejicanos ML. Epidemic Shiga bacillus dysentery in Central America. I. Etiologic investigations in Guatemala, 1969. J Infect Dis 1970, 122(3):170-180. 10.1093/infdis/122.3.170, 4915510.
    • (1970) J Infect Dis , vol.122 , Issue.3 , pp. 170-180
    • Mata, L.J.1    Gangarosa, E.J.2    Caceres, A.3    Perera, D.R.4    Mejicanos, M.L.5
  • 17
    • 0028796404 scopus 로고
    • Antimicrobial-resistant epidemic Shigella dysenteriae type 1 in Zambia: modes of transmission
    • 10.1093/infdis/171.2.371, 7844374
    • Tuttle J, Ries AA, Chimba RM, Perera CU, Bean NH, Griffin PM. Antimicrobial-resistant epidemic Shigella dysenteriae type 1 in Zambia: modes of transmission. J Infect Dis 1995, 171(2):371-375. 10.1093/infdis/171.2.371, 7844374.
    • (1995) J Infect Dis , vol.171 , Issue.2 , pp. 371-375
    • Tuttle, J.1    Ries, A.A.2    Chimba, R.M.3    Perera, C.U.4    Bean, N.H.5    Griffin, P.M.6
  • 18
    • 0032902431 scopus 로고    scopus 로고
    • An epidemic of bloody diarrhea: Escherichia coli O157 emerging in Cameroon?
    • 10.3201/eid0502.990217, 2640683, 10221885
    • Cunin P, Tedjouka E, Germani Y, Ncharre C, Bercion R, Morvan J, Martin PM. An epidemic of bloody diarrhea: Escherichia coli O157 emerging in Cameroon?. Emerg Infect Dis 1999, 5(2):285-290. 10.3201/eid0502.990217, 2640683, 10221885.
    • (1999) Emerg Infect Dis , vol.5 , Issue.2 , pp. 285-290
    • Cunin, P.1    Tedjouka, E.2    Germani, Y.3    Ncharre, C.4    Bercion, R.5    Morvan, J.6    Martin, P.M.7
  • 19
    • 0032418837 scopus 로고    scopus 로고
    • Etiologies of acute, persistent, and dysenteric diarrheas in adults in Bangui, Central African Republic, in relation to human immunodeficiency virus serostatus
    • Germani Y, Minssart P, Vohito M, Yassibanda S, Glaziou P, Hocquet D, Berthelemy P, Morvan J. Etiologies of acute, persistent, and dysenteric diarrheas in adults in Bangui, Central African Republic, in relation to human immunodeficiency virus serostatus. Am J Trop Med Hyg 1998, 59(6):1008-1014.
    • (1998) Am J Trop Med Hyg , vol.59 , Issue.6 , pp. 1008-1014
    • Germani, Y.1    Minssart, P.2    Vohito, M.3    Yassibanda, S.4    Glaziou, P.5    Hocquet, D.6    Berthelemy, P.7    Morvan, J.8
  • 23
    • 80051918561 scopus 로고    scopus 로고
    • PGAT: a multistrain analysis resource for microbial genomes
    • 10.1093/bioinformatics/btr418, 3157930, 21765097
    • Brittnacher MJ, Fong C, Hayden HS, Jacobs MA, Radey M, Rohmer L. PGAT: a multistrain analysis resource for microbial genomes. Bioinformatics 2011, 27(17):2429-2430. 10.1093/bioinformatics/btr418, 3157930, 21765097.
    • (2011) Bioinformatics , vol.27 , Issue.17 , pp. 2429-2430
    • Brittnacher, M.J.1    Fong, C.2    Hayden, H.S.3    Jacobs, M.A.4    Radey, M.5    Rohmer, L.6
  • 24
    • 26844581718 scopus 로고    scopus 로고
    • Shigella spp. and enteroinvasive Escherichia coli pathogenicity factors
    • 10.1016/j.femsle.2005.08.046, 16182469
    • Parsot C. Shigella spp. and enteroinvasive Escherichia coli pathogenicity factors. FEMS Microbiol Lett 2005, 252(1):11-18. 10.1016/j.femsle.2005.08.046, 16182469.
    • (2005) FEMS Microbiol Lett , vol.252 , Issue.1 , pp. 11-18
    • Parsot, C.1
  • 25
    • 84862290950 scopus 로고    scopus 로고
    • Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli
    • 10.1186/1471-2164-13-256, 3505186, 22712577
    • Didelot X, Meric G, Falush D, Darling AE. Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli. BMC Genomics 2012, 13:256. 10.1186/1471-2164-13-256, 3505186, 22712577.
    • (2012) BMC Genomics , vol.13 , pp. 256
    • Didelot, X.1    Meric, G.2    Falush, D.3    Darling, A.E.4
  • 26
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • 10.1186/1471-2148-7-214, 2247476, 17996036
    • Drummond AJ, Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7:214. 10.1186/1471-2148-7-214, 2247476, 17996036.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 27
    • 84877663836 scopus 로고    scopus 로고
    • Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics
    • 10.1093/molbev/mss243, 3548314, 23090976
    • Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P. Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics. Mol Biol Evol 2013, 30:239-243. 10.1093/molbev/mss243, 3548314, 23090976.
    • (2013) Mol Biol Evol , vol.30 , pp. 239-243
    • Baele, G.1    Li, W.L.2    Drummond, A.J.3    Suchard, M.A.4    Lemey, P.5
  • 28
    • 45849122039 scopus 로고    scopus 로고
    • Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
    • 10.1093/molbev/msn090, 3302198, 18408232
    • Minin VN, Bloomquist EW, Suchard MA. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol 2008, 25(7):1459-1471. 10.1093/molbev/msn090, 3302198, 18408232.
    • (2008) Mol Biol Evol , vol.25 , Issue.7 , pp. 1459-1471
    • Minin, V.N.1    Bloomquist, E.W.2    Suchard, M.A.3
  • 34
    • 0029986580 scopus 로고    scopus 로고
    • Genetic evidence for a role of parC mutations in development of high-level fluoroquinolone resistance in Escherichia coli
    • 163223, 8849244
    • Heisig P. Genetic evidence for a role of parC mutations in development of high-level fluoroquinolone resistance in Escherichia coli. Antimicrob Agents Chemother 1996, 40(4):879-885. 163223, 8849244.
    • (1996) Antimicrob Agents Chemother , vol.40 , Issue.4 , pp. 879-885
    • Heisig, P.1
  • 35
    • 32944461347 scopus 로고    scopus 로고
    • Fluoroquinolone resistance linked to both gyrA and parC mutations in the quinolone resistance-determining region of Shigella dysenteriae type 1
    • 10.1007/s00284-005-0140-9, 16450072
    • Talukder KA, Khajanchi BK, Islam MA, Islam Z, Dutta DK, Rahman M, Watanabe H, Nair GB, Sack DA. Fluoroquinolone resistance linked to both gyrA and parC mutations in the quinolone resistance-determining region of Shigella dysenteriae type 1. Curr Microbiol 2006, 52(2):108-111. 10.1007/s00284-005-0140-9, 16450072.
    • (2006) Curr Microbiol , vol.52 , Issue.2 , pp. 108-111
    • Talukder, K.A.1    Khajanchi, B.K.2    Islam, M.A.3    Islam, Z.4    Dutta, D.K.5    Rahman, M.6    Watanabe, H.7    Nair, G.B.8    Sack, D.A.9
  • 37
    • 84887611445 scopus 로고    scopus 로고
    • Lipomic profiling of bioactive lipids by mass spectrometry during microbial infections
    • 10.1016/j.smim.2013.08.006, 24084369
    • Tam V. Lipomic profiling of bioactive lipids by mass spectrometry during microbial infections. Semin Immunol 2013, 25:240-248. 10.1016/j.smim.2013.08.006, 24084369.
    • (2013) Semin Immunol , vol.25 , pp. 240-248
    • Tam, V.1
  • 38
    • 84855910140 scopus 로고    scopus 로고
    • Complete sequences of plasmids from the hemolytic-uremic syndrome-associated Escherichia coli strain HUSEC41
    • 10.1128/JB.06368-11, 3256666, 22207742
    • Kunne C, Billion A, Mshana SE, Schmiedel J, Domann E, Hossain H, Hain T, Imirzalioglu C, Chakraborty T. Complete sequences of plasmids from the hemolytic-uremic syndrome-associated Escherichia coli strain HUSEC41. J Bacteriol 2012, 194(2):532-533. 10.1128/JB.06368-11, 3256666, 22207742.
    • (2012) J Bacteriol , vol.194 , Issue.2 , pp. 532-533
    • Kunne, C.1    Billion, A.2    Mshana, S.E.3    Schmiedel, J.4    Domann, E.5    Hossain, H.6    Hain, T.7    Imirzalioglu, C.8    Chakraborty, T.9
  • 39
    • 0034819659 scopus 로고    scopus 로고
    • Ferric dicitrate transport system (Fec) of Shigella flexneri 2a YSH6000 is encoded on a novel pathogenicity island carrying multiple antibiotic resistance genes
    • 10.1128/IAI.69.10.6012-6021.2001, 98729, 11553538
    • Luck SN, Turner SA, Rajakumar K, Sakellaris H, Adler B. Ferric dicitrate transport system (Fec) of Shigella flexneri 2a YSH6000 is encoded on a novel pathogenicity island carrying multiple antibiotic resistance genes. Infect Immun 2001, 69(10):6012-6021. 10.1128/IAI.69.10.6012-6021.2001, 98729, 11553538.
    • (2001) Infect Immun , vol.69 , Issue.10 , pp. 6012-6021
    • Luck, S.N.1    Turner, S.A.2    Rajakumar, K.3    Sakellaris, H.4    Adler, B.5
  • 41
    • 29744433066 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites
    • 10.1086/498574, 16323140
    • Gutacker MM, Mathema B, Soini H, Shashkina E, Kreiswirth BN, Graviss EA, Musser JM. Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. J Infect Dis 2006, 193(1):121-128. 10.1086/498574, 16323140.
    • (2006) J Infect Dis , vol.193 , Issue.1 , pp. 121-128
    • Gutacker, M.M.1    Mathema, B.2    Soini, H.3    Shashkina, E.4    Kreiswirth, B.N.5    Graviss, E.A.6    Musser, J.M.7
  • 44
    • 0346218262 scopus 로고    scopus 로고
    • Newly emerged multiple-antibiotic-resistant Shigella dysenteriae type 1 strains in and around Kolkata, India, are clonal
    • 10.1128/JCM.41.12.5833-5834.2003, 308999, 14662996
    • Dutta S, Ghosh A, Ghosh K, Dutta D, Bhattacharya SK, Nair GB, Yoshida S. Newly emerged multiple-antibiotic-resistant Shigella dysenteriae type 1 strains in and around Kolkata, India, are clonal. J Clin Microbiol 2003, 41(12):5833-5834. 10.1128/JCM.41.12.5833-5834.2003, 308999, 14662996.
    • (2003) J Clin Microbiol , vol.41 , Issue.12 , pp. 5833-5834
    • Dutta, S.1    Ghosh, A.2    Ghosh, K.3    Dutta, D.4    Bhattacharya, S.K.5    Nair, G.B.6    Yoshida, S.7
  • 45
    • 0015940866 scopus 로고
    • Long-term Shigella-carrier state
    • 10.1056/NEJM197305312882207, 4573124
    • Levine MM, DuPont HL, Khodabandelou M, Hornick RB. Long-term Shigella-carrier state. N Engl J Med 1973, 288(22):1169-1171. 10.1056/NEJM197305312882207, 4573124.
    • (1973) N Engl J Med , vol.288 , Issue.22 , pp. 1169-1171
    • Levine, M.M.1    DuPont, H.L.2    Khodabandelou, M.3    Hornick, R.B.4
  • 46
    • 84870033212 scopus 로고    scopus 로고
    • Factors that explain excretion of enteric pathogens by persons without diarrhea
    • 10.1093/cid/cis789, 3502317, 23169942
    • Levine MM, Robins-Browne RM. Factors that explain excretion of enteric pathogens by persons without diarrhea. Clin Infect Dis 2012, 55(Suppl 4):S303-311. 10.1093/cid/cis789, 3502317, 23169942.
    • (2012) Clin Infect Dis , vol.55 , Issue.SUPPL. 4
    • Levine, M.M.1    Robins-Browne, R.M.2
  • 48
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • 10.1101/gr.074492.107, 2336801, 18349386
    • Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18(5):821-829. 10.1101/gr.074492.107, 2336801, 18349386.
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 49
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • 10.1093/bioinformatics/btp324, 2705234, 19451168
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 55
    • 58149183697 scopus 로고    scopus 로고
    • ARDB-antibiotic resistance genes database
    • 2686595, 18832362
    • Liu B, Pop M. ARDB-antibiotic resistance genes database. Nucleic Acids Res 2009, 37(Database issue):D443-447. 2686595, 18832362.
    • (2009) Nucleic Acids Res , vol.37 , Issue.Database issue
    • Liu, B.1    Pop, M.2
  • 56
    • 33846044584 scopus 로고    scopus 로고
    • MvirDB-a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications
    • 1669772, 17090593
    • Zhou CE, Smith J, Lam M, Zemla A, Dyer MD, Slezak T. MvirDB-a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Res 2007, 35(Database issue):D391-394. 1669772, 17090593.
    • (2007) Nucleic Acids Res , vol.35 , Issue.Database issue
    • Zhou, C.E.1    Smith, J.2    Lam, M.3    Zemla, A.4    Dyer, M.D.5    Slezak, T.6
  • 58
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 59
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer S. Statistical tests for detecting gene conversion. Mol Biol Evol 1989, 6(5):526-538.
    • (1989) Mol Biol Evol , vol.6 , Issue.5 , pp. 526-538
    • Sawyer, S.1
  • 60
    • 68049139485 scopus 로고    scopus 로고
    • Estimating maximum likelihood phylogenies with PhyML
    • 10.1007/978-1-59745-251-9_6, 19378142
    • Guindon S, Delsuc F, Dufayard JF, Gascuel O. Estimating maximum likelihood phylogenies with PhyML. Methods Mol Biol 2009, 537:113-137. 10.1007/978-1-59745-251-9_6, 19378142.
    • (2009) Methods Mol Biol , vol.537 , pp. 113-137
    • Guindon, S.1    Delsuc, F.2    Dufayard, J.F.3    Gascuel, O.4
  • 62
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • 10.1093/molbev/msn083, 18397919
    • Posada D. jModelTest: phylogenetic model averaging. Mol Biol Evol 2008, 25(7):1253-1256. 10.1093/molbev/msn083, 18397919.
    • (2008) Mol Biol Evol , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 63
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • 10.1093/molbev/msm088, 17483113
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591. 10.1093/molbev/msm088, 17483113.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 64
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • 10.1093/oxfordjournals.molbev.a026236, 10666704
    • Yang Z, Nielsen R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol 2000, 17(1):32-43. 10.1093/oxfordjournals.molbev.a026236, 10666704.
    • (2000) Mol Biol Evol , vol.17 , Issue.1 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.