메뉴 건너뛰기




Volumn 9, Issue 5, 2014, Pages

Erratum: Phylogenetic species identification in Rattus highlights rapid radiation and morphological similarity of new guinean species (PLoS ONE (2014) 9, 5 (e98002) DOI: 10.1371/journal.pone.0098002);Phylogenetic species identification in Rattus highlights rapid radiation and morphological similarity of New Guinean species

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA;

EID: 84901477467     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0107667     Document Type: Erratum
Times cited : (19)

References (57)
  • 2
    • 0028321347 scopus 로고
    • Evolution in some South-east Asian Murinae (Rodentia), as assessed by microcomplement fixation of albumin, and their relationship to Australian murines
    • Watts CHS, Baverstock PR (1994) Evolution in some South-east Asian Murinae (Rodentia), as assessed by microcomplement fixation of albumin, and their relationship to Australian murines. Aust J Zool 42: 711-722.
    • (1994) Aust J Zool , vol.42 , pp. 711-722
    • Watts, C.H.S.1    Baverstock, P.R.2
  • 3
    • 0034444170 scopus 로고    scopus 로고
    • Evolution of Rattus (Mammalia, Rodentia) during the Plio-Pleistocene in Thailand
    • Chaimanee Y, Jaeger J-J (2000) Evolution of Rattus (Mammalia, Rodentia) during the Plio-Pleistocene in Thailand. Historical Biology 15: 181-191. (Pubitemid 32477827)
    • (2000) Historical Biology , vol.15 , Issue.1-2 , pp. 181-191
    • Chaimanee, Y.1    Jaeger, J.-J.2
  • 4
    • 0020924434 scopus 로고
    • Native Rattus, land bridges, and the Australian region.
    • Taylor JM, Calaby JH, Smith SC (1983) Native Rattus, land bridges, and the Australian region. J Mammal 64: 463-475. (Pubitemid 15275051)
    • (1983) Journal of Mammalogy , vol.64 , Issue.3 , pp. 463-475
    • Taylor, J.M.1    Calaby, J.H.2    Smith, S.C.3
  • 5
    • 0000915185 scopus 로고
    • A revision of the genus Rattus (Rodentia, Muridae) in the New Guinean Region
    • Taylor JM, Calaby JH, Van Deusen HM (1982) A revision of the genus Rattus (Rodentia, Muridae) in the New Guinean Region. Bull Am Mus Nat Hist 173: 177-336.
    • (1982) Bull Am Mus Nat Hist , vol.173 , pp. 177-336
    • Taylor, J.M.1    Calaby, J.H.2    Van Deusen, H.M.3
  • 7
    • 0002754651 scopus 로고
    • Ship rat
    • King CM, editor. Auckland, Melbourne, Oxford, New York: Oxford University Press
    • Innes JG (1990) Ship rat. In: King CM, editor. The Handbook of New Zealand Mammals. Auckland, Melbourne, Oxford, New York: Oxford University Press. pp. 206-225.
    • (1990) The Handbook of New Zealand Mammals , pp. 206-225
    • Innes, J.G.1
  • 9
    • 80355129314 scopus 로고    scopus 로고
    • Multiple geographic origins of commensalism and complex dispersal history of black rats
    • Aplin KP, Suzuki H, Chinen AA, Chesser RT, Have Jt, et al. (2011) Multiple geographic origins of commensalism and complex dispersal history of black rats. PLoS ONE 6: e26357.
    • (2011) PLoS ONE , vol.6
    • Aplin, K.P.1    Suzuki, H.2    Chinen, A.A.3    Chesser, R.T.4    Have, Jt.5
  • 10
    • 0002307862 scopus 로고
    • The spread of commensal species of Rattus to oceanic islands and their effects on island avifaunas
    • Moors P, editor. Norwich, England: Paston Press
    • Atkinson IAE (1985) The spread of commensal species of Rattus to oceanic islands and their effects on island avifaunas. In: Moors P, editor. Conservation of Island Birds: Case studies for the management of threatened island species. Norwich, England: Paston Press. pp. 35-81.
    • (1985) Conservation of Island Birds: Case Studies for the Management of Threatened Island Species , pp. 35-81
    • Atkinson, I.A.E.1
  • 11
    • 0019757014 scopus 로고
    • Foraging patterns of black rats across a desert-montane forest gradient in the Galapagos Islands
    • Clark DA (1981) Foraging patterns of black rats across a desert-montane forest gradient in the Galapagos Islands. Biotropica 13: 182-194.
    • (1981) Biotropica , vol.13 , pp. 182-194
    • Clark, D.A.1
  • 12
    • 56349091551 scopus 로고    scopus 로고
    • Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease
    • Wyatt KB, Campos PF, Gilbert MTP, Kolokotronis S-O, Hynes WH, et al. (2008) Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease. PLoS ONE 3: e306.
    • (2008) PLoS ONE , vol.3
    • Wyatt, K.B.1    Campos, P.F.2    Gilbert, M.T.P.3    Kolokotronis, S.-O.4    Hynes, W.H.5
  • 16
    • 41849149675 scopus 로고    scopus 로고
    • Testing the reliability of genetic methods of species identification via simulation
    • DOI 10.1080/10635150802032990, PII 792021988
    • Ross HA, Murugan S, Li WLS (2008) Testing the reliability of genetic methods of species identification via simulation. Syst Biol 57: 216-230. (Pubitemid 351502942)
    • (2008) Systematic Biology , vol.57 , Issue.2 , pp. 216-230
    • Ross, H.A.1    Murugan, S.2    Li, W.L.S.3
  • 18
    • 34548444940 scopus 로고    scopus 로고
    • Sequence-based species delimitation for the DNA taxonomy of undescribed insects
    • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, et al. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst Biol 55: 595-609.
    • (2006) Syst Biol , vol.55 , pp. 595-609
    • Pons, J.1    Barraclough, T.G.2    Gomez-Zurita, J.3    Cardoso, A.4    Duran, D.P.5
  • 19
    • 77952703002 scopus 로고    scopus 로고
    • Bayesian species delimitation using multilocus sequence data
    • Yang Z, Rannala B (2010) Bayesian species delimitation using multilocus sequence data. Proc Natl Acad Sci USA 107: 9264-9269.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 9264-9269
    • Yang, Z.1    Rannala, B.2
  • 20
    • 34447620474 scopus 로고    scopus 로고
    • Delimiting species without monophyletic sene trees
    • DOI 10.1080/10635150701701091, PII 785835042
    • Knowles LL, Carstens BC (2007) Delimiting species without monophyletic gene trees. Syst Biol 56: 887-895. (Pubitemid 350129639)
    • (2007) Systematic Biology , vol.56 , Issue.6 , pp. 887-895
    • Knowles, L.L.1    Carstens, B.C.2
  • 21
    • 79951553023 scopus 로고    scopus 로고
    • Genetic monitoring detects an overlooked cryptic species and reveals the diversity and distribution of three invasive Rattus congeners in South Africa
    • Bastos AD, Nair D, Taylor PJ, Brettschneider H, Kirsten F, et al. (2011) Genetic monitoring detects an overlooked cryptic species and reveals the diversity and distribution of three invasive Rattus congeners in South Africa. BMC Genet 12: 26.
    • (2011) BMC Genet , vol.12 , pp. 26
    • Bastos, A.D.1    Nair, D.2    Taylor, P.J.3    Brettschneider, H.4    Kirsten, F.5
  • 22
    • 84868712884 scopus 로고    scopus 로고
    • Next-generation sequencing for rodent barcoding: Species identification from fresh, degraded and environmental samples
    • Galan M, Pagès M, Cosson J-F (2012) Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples. PLoS ONE 7: e48374.
    • (2012) PLoS ONE , vol.7
    • Galan, M.1    Pagès, M.2    Cosson, J.-F.3
  • 23
    • 77953629995 scopus 로고    scopus 로고
    • Revisiting the taxonomy of the Rattini tribe: A phylogeny-based delimitation of species boundaries
    • Pagès M, Chaval Y, Herbreteau V, Waengsothorn S, Cosson J-Fo, et al. (2010) Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries. BMC Evol Biol 10: 184.
    • (2010) BMC Evol Biol , vol.10 , pp. 184
    • Pagès, M.1    Chaval, Y.2    Herbreteau, V.3    Waengsothorn, S.4    Cosson, J.-F.5
  • 24
  • 25
    • 48349086614 scopus 로고    scopus 로고
    • Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily
    • Lecompte E, Aplin K, Denys C, Catzeflis F, Chades M, et al. (2008) Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily. BMC Evol Biol 8: 199.
    • (2008) BMC Evol Biol , vol.8 , pp. 199
    • Lecompte, E.1    Aplin, K.2    Denys, C.3    Catzeflis, F.4    Chades, M.5
  • 26
    • 79951564153 scopus 로고    scopus 로고
    • Recent and rapid speciation with limited morphological disparity in the genus Rattus
    • Rowe KC, Aplin KP, Baverstock PR, Moritz C (2011) Recent and rapid speciation with limited morphological disparity in the genus Rattus. Syst Biol 60: 188-203.
    • (2011) Syst Biol , vol.60 , pp. 188-203
    • Rowe, K.C.1    Aplin, K.P.2    Baverstock, P.R.3    Moritz, C.4
  • 30
    • 84863740080 scopus 로고    scopus 로고
    • Contribution to the species composition and taxonomic status of some Rattus inhabiting Southern Vietnam and Sundaland
    • Balakirev AE, Rozhnov VV (2012) Contribution to the species composition and taxonomic status of some Rattus inhabiting Southern Vietnam and Sundaland. Russian Journal of Theriology 11: 33-45.
    • (2012) Russian Journal of Theriology , vol.11 , pp. 33-45
    • Balakirev, A.E.1    Rozhnov, V.V.2
  • 31
    • 0347380991 scopus 로고    scopus 로고
    • Radiation of Extant Marsupials after the K/T Boundary: Evidence from Complete Mitochondrial Genomes
    • DOI 10.1007/s00239-003-0001-8
    • Nilsson MA, Gullberg A, Spotorno AE, Arnason U, Janke A (2003) Radiation of extant marsupials after the K/T boundary: evidence from complete mitochondrial genomes J Mol Evol 57: S3-S12. (Pubitemid 37543991)
    • (2003) Journal of Molecular Evolution , vol.57 , Issue.SUPPL. 1
    • Nilsson, M.A.1    Gullberg, A.2    Spotorno, A.E.3    Arnason, U.4    Janke, A.5
  • 33
    • 0034682945 scopus 로고    scopus 로고
    • Ancient DNA: Do it right or not at all [1]
    • Cooper A, Poinar HN (2000) Ancient DNA: Do It right or not at all. Science 289: 1139. (Pubitemid 30650710)
    • (2000) Science , vol.289 , Issue.5482 , pp. 1139
    • Cooper, A.1
  • 34
    • 34248549305 scopus 로고    scopus 로고
    • Comparison and optimization of ancient DNA extraction
    • Rohland N, Hofreiter M (2007) Comparison and optimization of ancient DNA extraction. BioTechniques 42: 343-352.
    • (2007) BioTechniques , vol.42 , pp. 343-352
    • Rohland, N.1    Hofreiter, M.2
  • 35
    • 0030870510 scopus 로고    scopus 로고
    • Ancient DNA from polynesian rats: Extraction, amplification and sequence from single small bones
    • DOI 10.1002/elps.1150180908
    • Matisoo-Smith E, Allen JS, Ladefoged TN, Roberts RM, Lambert DM (1997) Ancient DNA from Polynesian rats: Extraction, amplification and sequence from single small bones. Electrophoresis 18: 1534-1537. (Pubitemid 27395757)
    • (1997) Electrophoresis , vol.18 , Issue.9 , pp. 1534-1537
    • Matisoo-Smith, E.1    Allen, J.S.2    Ladefoged, T.N.3    Roberts, R.M.4    Lambert, D.M.5
  • 36
    • 0027320140 scopus 로고
    • DNA extraction from Pleistocene bones by a silica-based purification method
    • Höss M, Pääbo S (1993) DNA extraction from Pleistocene bones by a silica-based purification method. Nucleic Acids Research 21: 3913-3914.
    • (1993) Nucleic Acids Research , vol.21 , pp. 3913-3914
    • Höss, M.1    Pääbo, S.2
  • 37
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • Hofreiter M, Jaenicke V, Serre D, Haeseler Av, Pääbo S (2001) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Research 29: 4793-4799. (Pubitemid 33133550)
    • (2001) Nucleic Acids Research , vol.29 , Issue.23 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    Von Haeseler, A.4    Paabo, S.5
  • 38
    • 77957985932 scopus 로고    scopus 로고
    • Ancient DNA reveals extreme egg morphology and nesting behavior in New Zealand's extinct moa
    • Huynen L, Gill BJ, Millar CD, Lambert DM (2010) Ancient DNA reveals extreme egg morphology and nesting behavior in New Zealand's extinct moa. Proc Natl Acad Sci USA 107: 16201-16206.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 16201-16206
    • Huynen, L.1    Gill, B.J.2    Millar, C.D.3    Lambert, D.M.4
  • 39
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist F, Huelsenbeck JP (2003) Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 40
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 41
    • 84907710931 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and postanalysis of large phylogenies
    • Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and postanalysis of large phylogenies. Bioinformatics: advance publication.
    • (2014) Bioinformatics: Advance Publication
    • Stamatakis, A.1
  • 42
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: Phylogenetic model averaging
    • Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 44
    • 84873092714 scopus 로고    scopus 로고
    • Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex)
    • Pagès M, Bazin E, Galan M, Chaval Y, Claude J, et al. (2013) Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex). Mol Ecol 22: 1019-1034.
    • (2013) Mol Ecol , vol.22 , pp. 1019-1034
    • Pagès, M.1    Bazin, E.2    Galan, M.3    Chaval, Y.4    Claude, J.5
  • 45
    • 84971056570 scopus 로고
    • Systematics and chromosomes of New Guinea Rattus
    • Dennis E, Menzies JI (1978) Systematics and chromosomes of New Guinea Rattus. Australian Journal of Zoology 26: 197-206.
    • (1978) Australian Journal of Zoology , vol.26 , pp. 197-206
    • Dennis, E.1    Menzies, J.I.2
  • 46
    • 0042718489 scopus 로고
    • Results of the Archbold expeditions. No 98. Systematics of native Australian Rattus (Rodentia, Muridae)
    • Taylor JM, Horner E (1973) Results of the Archbold expeditions. No 98. Systematics of native Australian Rattus (Rodentia, Muridae). Bull Am Mus Nat Hist 150: 1-130.
    • (1973) Bull Am Mus Nat Hist , vol.150 , pp. 1-130
    • Taylor, J.M.1    Horner, E.2
  • 47
    • 0017401649 scopus 로고
    • Chromosome evolution in Australian rodents. II. The Rattus group
    • Baverstock PR, Watts CHS, Hogarth J, T., Robinson JF (1977) Chromosome evolution in Australian rodents II. The Rattus group. Chromosoma 61: 227-241. (Pubitemid 8107112)
    • (1977) Chromosoma , vol.61 , Issue.3 , pp. 227-241
    • Baverstock, P.R.1    Watts, C.H.S.2    Hogarth, J.T.3
  • 48
    • 0002635702 scopus 로고
    • Biochemical differentiation among karyotypic forms of Australian Rattus
    • Baverstock PR, Adams M, Watts CHS (1986) Biochemical differentiation among karyotypic forms of Australian Rattus. Genetica 71: 11-22.
    • (1986) Genetica , vol.71 , pp. 11-22
    • Baverstock, P.R.1    Adams, M.2    Watts, C.H.S.3
  • 49
    • 6344294091 scopus 로고
    • The mammals of Southern West Sepik Province, Papua New Guinea: Their distribution, abundance, human use and zoogeography
    • Flannery TF, Seri L (1990) The mammals of Southern West Sepik Province, Papua New Guinea: their distribution, abundance, human use and zoogeography. Rec Aust Mus 42: 173-208.
    • (1990) Rec Aust Mus , vol.42 , pp. 173-208
    • Flannery, T.F.1    Seri, L.2
  • 51
    • 33644601043 scopus 로고    scopus 로고
    • The pattern and timing of diversification of Philippine endemic rodents: Evidence from mitochondrial and nuclear gene sequences
    • Jansa SA, Barker FK, Heaney LR (2006) The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences. Syst Biol 55: 73-88.
    • (2006) Syst Biol , vol.55 , pp. 73-88
    • Jansa, S.A.1    Barker, F.K.2    Heaney, L.R.3
  • 52
    • 84894609144 scopus 로고    scopus 로고
    • Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices
    • Simmons MP (2014) Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices. Mol Phylogenet Evol 74: 1-14.
    • (2014) Mol Phylogenet Evol , vol.74 , pp. 1-14
    • Simmons, M.P.1
  • 54
    • 84863718951 scopus 로고    scopus 로고
    • Invasion facilitates hybridization with introgression in the Rattus rattus species complex
    • Lack JB, Greene DU, Conroy CJ, Hamilton MJ, Braun JK, et al. (2012) Invasion facilitates hybridization with introgression in the Rattus rattus species complex. Mol Ecol 21: 3545-3561.
    • (2012) Mol Ecol , vol.21 , pp. 3545-3561
    • Lack, J.B.1    Greene, D.U.2    Conroy, C.J.3    Hamilton, M.J.4    Braun, J.K.5
  • 55
    • 0020504876 scopus 로고
    • Chromosome evolution in Australian Rattus - G-banding and hybrid meiosis
    • Baverstock PR, Gelder M, Jahnke A (1983) Chromosome evolution in Australian Rattus G-banding and hybrid meiosis. Genetica 60: 93-103. (Pubitemid 13098213)
    • (1983) Genetica , vol.60 , Issue.2 , pp. 93-103
    • Baverstock, P.R.1    Gelder, M.2    Jahnke, A.3
  • 56
    • 0242278924 scopus 로고
    • Systematic relationships among Rattus in Southern Australia: Evidence from cross-breeding experiments
    • Horner BE, Taylor JM (1965) Systematic relationships among Rattus in Southern Australia: evidence from cross-breeding experiments. CSIRO Wildlife Research 10: 101-109.
    • (1965) CSIRO Wildlife Research , vol.10 , pp. 101-109
    • Horner, B.E.1    Taylor, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.