Temporal variations in the abundance and composition of biofilm communities colonizing drinking water distribution pipes

PLoS ONE

Volumn 9, Issue 5, 2014, Pages

  Kelly, John J ^a   Minalt, Nicole ^a   Culotti, Alessandro ^b   Pryor, Marsha ^c   Packman, Aaron ^b  

^a LOYOLA UNIVERSITY CHICAGO   (United States)

^b Northwestern University   (United States)

^c Pinellas County Utilities   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; CHLORINE; DISINFECTANT AGENT; DRINKING WATER; MONOCHLORAMINE; NITRATE; RNA 16S; BACTERIAL RNA;

ACINETOBACTER; ALKALINITY; ARTICLE; BACTERIAL COLONIZATION; BIOFILM; CONCENTRATION (PARAMETERS); DRINKING WATER DISTRIBUTION SYSTEM; METHYLOMONAS; MICROBIAL DIVERSITY; MYCOBACTERIUM; NONHUMAN; PLATE COUNT; POPULATION ABUNDANCE; PYROSEQUENCING; SPECIES COMPOSITION; TAXONOMIC IDENTIFICATION; TUBE; UNITED STATES; WATER HARDNESS; WATER SUPPLY; WATER TEMPERATURE; XANTHOMONADACEAE; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIUM; CLASSIFICATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY;

BACTERIA; BACTERIAL PHYSIOLOGICAL PHENOMENA; BIOFILMS; DRINKING WATER; FLORIDA; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; WATER MICROBIOLOGY;

EID: 84901475157     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0098542     Document Type: Article

References (60)

1. Szewzyk U, Szewzyk R, Manz W, Schleifer K (2000) Microbiological safety of drinking water. Annual Reviews in Microbiology 54: 81-127.
2. Marshall KC (1988) Adhesion and growth of bacteria at surfaces in oligotrophic habitats. Can J Microbiol 34: 503-506.
3. Zacheus OM, Lehtola MJ, Korhonen LK, Martikainen PJ (2001) Soft deposits, the key site for microbial growth in drinking water distribution networks. Water Res 35: 1757-1765. (Pubitemid 32201485)
4. LeChevallier MW, Cawthon CD, Lee RG (1988) Factors promoting survival of bacteria in chlorinated water supplies. Appl Environ Microbiol 54: 649-654. (Pubitemid 18069642)
5. Ridgway H, Olson B (1982) Chlorine resistance patterns of bacteria from two drinking water distribution systems. Appl Environ Microbiol 44: 972-987. (Pubitemid 13213369)
6. Liu Y, Zhang W, Sileika T, Warta R, Cianciotto NP, et al. (2011) Disinfection of bacterial biofilms in pilot-scale cooling tower systems. Biofouling 27: 393-402.
7. Hong P, Hwang C, Ling F, Andersen GL, LeChevallier MW, et al. (2010) Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system. Appl Environ Microbiol 76: 5631-5635.
8. Bois FY, Fahmy T, Block J, Gatel D (1997) Dynamic modeling of bacteria in a pilot drinking-water distribution system. Water Res 31: 3146-3156. (Pubitemid 27517362)
9. Martiny AC, Jørgensen TM, Albrechtsen H, Arvin E, Molin S (2003) Long-term succession of structure and diversity of a biofilm formed in a model drinking water distribution system. Appl Environ Microbiol 69: 6899-6907. (Pubitemid 37420231)
10. Amann RI, Ludwig W, Schleifer K (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
11. Kalmbach S, Manz W, Szewzyk U (1997) Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes. Appl Environ Microbiol 63: 4164-4170. (Pubitemid 27485734)
12. Schmeisser C, Stöckigt C, Raasch C, Wingender J, Timmis K, et al. (2003) Metagenome survey of biofilms in drinking-water networks. Appl Environ Microbiol 69: 7298-7309. (Pubitemid 38585382)
13. Parsek MR, Singh PK (2003) Bacterial biofilms: An emerging link to disease pathogenesis. Annual Reviews in Microbiology 57: 677-701. (Pubitemid 37392958)
14. Hoefel D, Monis PT, Grooby WL, Andrews S, Saint CP (2005) Culture-independent techniques for rapid detection of bacteria associated with loss of chloramine residual in a drinking water system. Appl Environ Microbiol 71: 6479-6488. (Pubitemid 43194127)
15. Eichler S, Christen R, Höltje C, Westphal P, Bötel J, et al. (2006) Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA-and DNA-based 16S rRNA gene fingerprinting. Appl Environ Microbiol 72: 1858-1872.
16. Marshall K, Blainey BL (1991) Role of bacterial adhesion in biofilm formation and biocorrosion. In: Anonymous Biofouling and Biocorrosion in Industrial Water Systems: Springer. pp. 29-46.
17. Rice EW, Baird RB, Eaton AD, Clesceri LS, editors (2012) Standard methods for the examination of water and wastewater, 22nd ed. Denver, CO: American Water Works Association.
18. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, editors. Nucleic acid techniques in bacterial systematics. Chichester, UK: John Wiley.
19. Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, et al. (2009) Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol 75: 5227-5236.
20. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
21. Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
22. Chao A (1984) Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics 11: 265-270.
23. Shannon CE (2001) A mathematical theory of communication. ACM SIGMOBILE Mobile Computing and Communications Review 5: 3-55.
24. Yue JC, Clayton MK (2005) A similarity measure based on species proportions. Communications in Statistics-Theory and Methods 34: 2123-2131. (Pubitemid 41605509)
25. Zhang P, LaPara TM, Goslan EH, Xie Y, Parsons SA, et al. (2009) Biodegradation of haloacetic acids by bacterial isolates and enrichment cultures from drinking water systems. Environ Sci Technol 43: 3169-3175.
26. Vaerewijck MJ, Huys G, Palomino JC, Swings J, Portaels F (2005) Mycobacteria in drinking water distribution systems: Ecology and significance for human health. FEMS Microbiol Rev 29: 911-934. (Pubitemid 41417787)
27. Forster D, Daschner F (1998) Acinetobacter species as nosocomial pathogens. European Journal of Clinical Microbiology and Infectious Diseases 17: 73-77. (Pubitemid 28306112)
28. Hedrich S, Schlomann M, Johnson DB (2011) The iron-oxidizing proteobacteria. Microbiology 157: 1551-1564.
29. Emerson D, Fleming EJ, McBeth JM (2010) Iron-oxidizing bacteria: An environmental and genomic perspective. Annu Rev Microbiol 64: 561-583.
30. Madigan MT, Martinko JM, Dunlap PV, Clark DP (2009) Brock biology of microorganisms. San Francisco, CA: Pearson/Benjamin Cummings.
31. Staley JT, Konopka A (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annual Reviews in Microbiology 39: 321-346.
32. Revetta RP, Pemberton A, Lamendella R, Iker B, Santo Domingo JW (2010) Identification of bacterial populations in drinking water using 16S rRNA-based sequence analyses. Water Res 44: 1353-1360.
33. Brenner D, Krieg N, Staley J, Garrity G, Boone D, et al. (2005) The proteobacteria, part B, the gammaproteobacteria. Bergey's manual of systematic bacteriology 2.
34. McKeon DM, Calabrese JP, Bissonnette GK (1995) Antibiotic resistant gram-negative bacteria in rural groundwater supplies. Water Res 29: 1902-1908.
35. Bifulco JM, Shirey J, Bissonnette G (1989) Detection of acinetobacter spp. in rural drinking water supplies. Appl Environ Microbiol 55: 2214-2219. (Pubitemid 19228853)
36. Shirey JJ, Bissonnette GK (1991) Detection and identification of groundwater bacteria capable of escaping entrapment on 0.45-micron-pore-size membrane filters. Appl Environ Microbiol 57: 2251-2254.
37. Hansen SK, Rainey PB, Haagensen JA, Molin S (2007) Evolution of species interactions in a biofilm community. Nature 445: 533-536. (Pubitemid 46197632)
38. Marin M, Pedregosa A, Laborda F (1996) Emulsifier production and microscopical study of emulsions and biofilms formed by the hydrocarbon- utilizing bacteria acinetobacter calcoaceticus MM5. Appl Microbiol Biotechnol 44: 660-667.
39. Tomaras AP, Dorsey CW, Edelmann RE, Actis LA (2003) Attachment to and biofilm formation on abiotic surfaces by acinetobacter baumannii: Involvement of a novel chaperone-usher pili assembly system. Microbiology 149: 3473-3484. (Pubitemid 38016675)
40. Wentzel M, Lötter L, Loewenthal R, Marais G (1986) Metabolic behaviour of acinetobacter spp. in enhanced biological phosphorus removal- a biochemical model. Water S A 12: 209-224. (Pubitemid 17230361)
41. Hanson RS, Hanson TE (1996) Methanotrophic bacteria. Microbiol Rev 60: 439-471. (Pubitemid 26170914)
42. Covert TC, Rodgers MR, Reyes AL, Stelma GN (1999) Occurrence of nontuberculous mycobacteria in environmental samples. Appl Environ Microbiol 65: 2492-2496.
43. Pryor M, Springthorpe S, Riffard S, Brooks T, Huo Y, et al. (2004) Investigation of opportunistic pathogens in municipal drinking water under different supply and treatment regimes. Water Science & Technology 50: 83-90. (Pubitemid 39139959)
44. Weinberger M, Berg SL, Feuerstein IM, Pizzo PA, Witebsky FG (1992) Disseminated infection with mycobacterium gordonae: Report of a case and critical review of the literature. Clinical infectious diseases 14: 1229-1239.
45. Desforges JF, Horsburgh CR Jr (1991) Mycobacterium avium complex infection in the acquired immunodeficiency syndrome. N Engl J Med 324: 1332-1338.
46. Carson LA, Petersen NJ, Favero MS, Aguero SM (1978) Growth characteristics of atypical mycobacteria in water and their comparative resistance to disinfectants. Appl Environ Microbiol 36: 839-846. (Pubitemid 9070704)
47. Beumer A, King D, Donohue M, Mistry J, Covert T, et al. (2010) Detection of mycobacterium avium subsp. paratuberculosis in drinking water and biofilms by quantitative PCR. Appl Environ Microbiol 76: 7367-7370.
48. Falkinham JO, Norton CD, LeChevallier MW (2001) Factors influencing numbers of mycobacterium avium, mycobacterium intracellulare, and other mycobacteria in drinking water distribution systems. Appl Environ Microbiol 67: 1225-1231. (Pubitemid 33643564)
49. Gomez-Alvarez V, Revetta RP, Santo Domingo JW (2012) Metagenomic analyses of drinking water receiving different disinfection treatments. Appl Environ Microbiol 78: 6095-6102.
50. Norton CD, LeChevallier MW, Falkinham JO III (2004) Survival of〈i〉 mycobacterium avium〈/i〉 in a model distribution system. Water Res 38: 1457-1466. (Pubitemid 38317378)
51. LeChevallier MW, Lowry CD, Lee RG, Gibbon DL (1993) Examining the relationship between iron corrosion and the disinfection of biofilm bacteria. Journal-American Water Works Association 85: 111-123.
52. Critchley M, Fallowfield H (2001) The effect of distribution system bacterial biofilms on copper concentrations in drinking water. Water Sci Technol Water Supply 1: 247-252. (Pubitemid 32769319)
53. Lipponen MT, Suutari MH, Martikainen PJ (2002) Occurrence of nitrifying bacteria and nitrification in finnish drinking water distribution systems. Water Res 36: 4319-4329. (Pubitemid 35286866)
54. Cunliffe DA (1991) Bacterial nitrification in chloraminated water supplies. Appl Environ Microbiol 57: 3399-3402.
55. Regan JM, Harrington GW, Noguera DR (2002) Ammonia- and nitrite-oxidizing bacterial communities in a pilot-scale chloraminated drinking water distribution system. Appl Environ Microbiol 68: 73-81. (Pubitemid 34031165)
56. Wilczak A, Jacangelo JG, Marcinko JP, Odell LH, Kirmeyer GJ, et al. (1996) Occurrence of nitrification in chloraminated distribution systems. Journal-American Water Works Association 88: 74-85. (Pubitemid 126596688)
57. McKew BA, Taylor JD, McGenity TJ, Underwood GJ (2010) Resistance and resilience of benthic biofilm communities from a temperate saltmarsh to desiccation and rewetting. The ISME journal 5: 30-41.
58. Harrison F (2007) Microbial ecology of the cystic fibrosis lung. Microbiology 153: 917-923.
59. Boomer SM, Noll KL, Geesey GG, Dutton BE (2009) Formation of multilayered photosynthetic biofilms in an alkaline thermal spring in yellowstone national park, wyoming. Appl Environ Microbiol 75: 2464-2475.
60. Ledder R, Gilbert P, Pluen A, Sreenivasan P, De Vizio W, et al. (2006) Individual microflora beget unique oral microcosms. J Appl Microbiol 100: 1123-1131.