메뉴 건너뛰기




Volumn , Issue , 2013, Pages 229-247

Evolving molecular marker technologies in plants: From RFLPs to GBS

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84901354745     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-94-007-5687-8_11     Document Type: Chapter
Times cited : (44)

References (97)
  • 2
    • 67749088031 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping in polyploidy wheat with the Illumina GoldenGate assay
    • Akhunov E, Nicolet C, Dvorak J (2009) Single nucleotide polymorphism genotyping in polyploidy wheat with the Illumina GoldenGate assay. Theor Appl Genet 119:507-517
    • (2009) Theor Appl Genet , vol.119 , pp. 507-517
    • Akhunov, E.1    Nicolet, C.2    Dvorak, J.3
  • 4
    • 65349159741 scopus 로고    scopus 로고
    • New technologies for ultra-high throughput genotyping in plants
    • Somers DJ, Langridge P, Gustafson JP (Eds) Humana Press, Hertfordshire
    • Appleby N, Edwards D, Batley J (2009) New technologies for ultra-high throughput genotyping in plants. In: Somers DJ, Langridge P, Gustafson JP (eds) Plant genomics methods & protocols. Humana Press, Hertfordshire, pp 19-39
    • (2009) Plant Genomics Methods & Protocols , pp. 19-39
    • Appleby, N.1    Edwards, D.2    Batley, J.3
  • 6
    • 50249188268 scopus 로고    scopus 로고
    • Functional markers in wheat: Technical and economic aspects
    • Bagge M, Lubberstedt T (2008) Functional markers in wheat: technical and economic aspects. Mol Breed 22:319-328
    • (2008) Mol Breed , vol.22 , pp. 319-328
    • Bagge, M.1    Lubberstedt, T.2
  • 7
    • 0031665418 scopus 로고    scopus 로고
    • Comparison of AFLP and pedigree-based genetic diversity assessment methods using wheat cultivars from the pacific Northwest
    • Barrett BA, Kidwell KK, Fox PN (1998) Comparison of AFLP and pedigree-based genetic diversity assessment methods using wheat cultivars from the pacific Northwest. Crop Sci 38:1271-1278
    • (1998) Crop Sci , vol.38 , pp. 1271-1278
    • Barrett, B.A.1    Kidwell, K.K.2    Fox, P.N.3
  • 12
    • 33751017957 scopus 로고    scopus 로고
    • Sequencing Medicago truncatula expressed sequenced tags using 454 life sciences technology
    • Cheung F, Haas BJ, Goldberg SM, May GD, Xiao Y, Town CD (2006) Sequencing Medicago truncatula expressed sequenced tags using 454 life sciences technology. BMC Genomics 7:272
    • (2006) BMC Genomics , vol.7 , pp. 272
    • Cheung, F.1    Haas, B.J.2    Goldberg, S.M.3    May, G.D.4    Xiao, Y.5    Town, C.D.6
  • 14
    • 80054787802 scopus 로고    scopus 로고
    • SNP marker diversity in common bean (Phaseolus vulgaris L.)
    • Cortes AJ, Chavarro MC, Blair MW (2011) SNP marker diversity in common bean (Phaseolus vulgaris L.). Theor Appl Genet 123:827-845
    • (2011) Theor Appl Genet , vol.123 , pp. 827-845
    • Cortes, A.J.1    Chavarro, M.C.2    Blair, M.W.3
  • 16
    • 84858388442 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite loci in Rhododendron ferrugineum (Ericaceae) using pyrosequencing technology
    • Delmas CE, Lhuillier E, Pornon A, Escaravage N (2011) Isolation and characterization of microsatellite loci in Rhododendron ferrugineum (Ericaceae) using pyrosequencing technology. Am J Bot 98:e120-e122
    • (2011) Am J Bot , vol.98 , pp. e120-e122
    • Delmas, C.E.1    Lhuillier, E.2    Pornon, A.3    Escaravage, N.4
  • 19
  • 20
    • 0027508951 scopus 로고
    • Artifactual variation in randomly amplified polymorphic DNA banding patterns
    • Ellsworth DL, Rittenhouse KD, Honeycutt RL (1993) Artifactual variation in randomly amplified polymorphic DNA banding patterns. Biotechniques 14:214-217
    • (1993) Biotechniques , vol.14 , pp. 214-217
    • Ellsworth, D.L.1    Rittenhouse, K.D.2    Honeycutt, R.L.3
  • 22
    • 0033374383 scopus 로고    scopus 로고
    • Linkage between three morphological markers in lentil
    • EmamiMK, Sharma B (1999) Linkage between three morphological markers in lentil. Plant Breed 118:579-581
    • (1999) Plant Breed , vol.118 , pp. 579-581
    • Emami, M.K.1    Sharma, B.2
  • 23
    • 0000356772 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism (AFLP) markers for barley malt fingerprinting
    • Faccioli P, Pecchioni N, Stanca AM, Terzi V (1999) Amplified fragment length polymorphism (AFLP) markers for barley malt fingerprinting. J Cereal Sci 29:257-260
    • (1999) J Cereal Sci , vol.29 , pp. 257-260
    • Faccioli, P.1    Pecchioni, N.2    Stanca, A.M.3    Terzi, V.4
  • 27
    • 79953122203 scopus 로고    scopus 로고
    • A next-generation sequencing method for overcoming the multiple gene copy problem in polyploidy phylogenetics, applied to Poa grasses
    • Griffin PC, Robin C, Hoffmann AA (2011) A next-generation sequencing method for overcoming the multiple gene copy problem in polyploidy phylogenetics, applied to Poa grasses. BMC Biol 9:19
    • (2011) BMC Biol , vol.9 , pp. 19
    • Griffin, P.C.1    Robin, C.2    Hoffmann, A.A.3
  • 28
    • 18144425478 scopus 로고    scopus 로고
    • A genome-wide scalable SNP genotyping assay using microarray technology
    • Gunderson KL, Steemers FJ, Lee G, Mendoza LG, Chee MS (2005) A genome-wide scalable SNP genotyping assay using microarray technology. Nat Genet 37:549-554
    • (2005) Nat Genet , vol.37 , pp. 549-554
    • Gunderson, K.L.1    Steemers, F.J.2    Lee, G.3    Mendoza, L.G.4    Chee, M.S.5
  • 29
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • Gupta PK, Varshney RK (2000) The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113:163-185
    • (2000) Euphytica , vol.113 , pp. 163-185
    • Gupta, P.K.1    Varshney, R.K.2
  • 30
    • 0032751864 scopus 로고    scopus 로고
    • Molecular markers and their application in wheat breeding
    • Gupta PK, Varshney RK, Sharma PC, Ramesh B (1999) Molecular markers and their application in wheat breeding. Plant Breed 118:369-390
    • (1999) Plant Breed , vol.118 , pp. 369-390
    • Gupta, P.K.1    Varshney, R.K.2    Sharma, P.C.3    Ramesh, B.4
  • 31
    • 0012339256 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants
    • Gupta PK, Roy JK, Prasad M (2001) Single nucleotide polymorphisms: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants. Curr Sci 80:524-535
    • (2001) Curr Sci , vol.80 , pp. 524-535
    • Gupta, P.K.1    Roy, J.K.2    Prasad, M.3
  • 32
    • 45549086886 scopus 로고    scopus 로고
    • Array-based high-throughput DNA markers for crop improvement
    • Gupta PK, Rustagi S, Mir RR (2008) Array-based high-throughput DNA markers for crop improvement. Heredity 101:1-14
    • (2008) Heredity , vol.101 , pp. 1-14
    • Gupta, P.K.1    Rustagi, S.2    Mir, R.R.3
  • 33
    • 84871793578 scopus 로고    scopus 로고
    • Marker-assisted selection as a component of conventional plant breeding
    • Gupta PK, Kumar J, Mir RR, Kumar A (2010) Marker-assisted selection as a component of conventional plant breeding. Plant Breed Rev 33:145-217
    • (2010) Plant Breed Rev , vol.33 , pp. 145-217
    • Gupta, P.K.1    Kumar, J.2    Mir, R.R.3    Kumar, A.4
  • 35
    • 38149144422 scopus 로고
    • A genetic linkage map for maize based on RFLPs
    • Helentjaris T (1987) A genetic linkage map for maize based on RFLPs. Trends Genet 3:217-221
    • (1987) Trends Genet , vol.3 , pp. 217-221
    • Helentjaris, T.1
  • 36
    • 0001759286 scopus 로고
    • Inheritance of RAPDs in F1 hybrids of corn
    • Heun M, Helentjaris T (1993) Inheritance of RAPDs in F1 hybrids of corn. Theor Appl Genet 85:961-968
    • (1993) Theor Appl Genet , vol.85 , pp. 961-968
    • Heun, M.1    Helentjaris, T.2
  • 39
    • 0034032902 scopus 로고    scopus 로고
    • Chromosomal location of AFLP markers in common wheat utilizing nulli-tetrasomic stocks
    • Huang X, Zeller FJ, Hsam SL, Wenzel G, Mohler V (2000) Chromosomal location of AFLP markers in common wheat utilizing nulli-tetrasomic stocks. Genome 43:298-305
    • (2000) Genome , vol.43 , pp. 298-305
    • Huang, X.1    Zeller, F.J.2    Hsam, S.L.3    Wenzel, G.4    Mohler, V.5
  • 42
    • 59249102518 scopus 로고    scopus 로고
    • Bulked segregant analysis using the GoldenGate assay to locate the Rpp 3 locus that confers resistance to soybean rust in soybean
    • Hyten DL, Smith JR, Fredrick RD, Tucker ML, Song Q, Cregan PB (2009) Bulked segregant analysis using the GoldenGate assay to locate the Rpp 3 locus that confers resistance to soybean rust in soybean. Crop Sci 49:265-271
    • (2009) Crop Sci , vol.49 , pp. 265-271
    • Hyten, D.L.1    Smith, J.R.2    Fredrick, R.D.3    Tucker, M.L.4    Song, Q.5    Cregan, P.B.6
  • 43
    • 76749130701 scopus 로고    scopus 로고
    • High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
    • Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB (2010a) High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 11:38
    • (2010) BMC Genomics , vol.11 , pp. 38
    • Hyten, D.L.1    Cannon, S.B.2    Song, Q.3    Weeks, N.4    Fickus, E.W.5    Shoemaker, R.C.6    Specht, J.E.7    Farmer, A.D.8    May, G.D.9    Cregan, P.B.10
  • 45
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: A solid state technology for sequence information independent genotyping
    • Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity arrays: A solid state technology for sequence information independent genotyping. Nucleic Acids Res 29:25-31
    • (2001) Nucleic Acids Res , vol.29 , pp. 25-31
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 49
    • 0025009208 scopus 로고
    • RFLP mapping in soybean: Association between marker loci and variation in quantitative traits
    • Keim P, Diers BW, Olson TC, Shoemaker RC (1990) RFLP mapping in soybean: association between marker loci and variation in quantitative traits. Genetics 126:735-742
    • (1990) Genetics , vol.126 , pp. 735-742
    • Keim, P.1    Diers, B.W.2    Olson, T.C.3    Shoemaker, R.C.4
  • 50
    • 0035776497 scopus 로고    scopus 로고
    • Methods for genotyping single nucleotide polymorphisms
    • Kwok P (2001) Methods for genotyping single nucleotide polymorphisms. Annu Rev Genomics Hum Genet 2:235-258
    • (2001) Annu Rev Genomics Hum Genet , vol.2 , pp. 235-258
    • Kwok, P.1
  • 53
    • 0030268112 scopus 로고    scopus 로고
    • Level of polymorphism and genetic mapping of AFLP markers in rice
    • Mackill DJ, Zhang Z, Redona ED, Colowit PM (1996) Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39:969-977
    • (1996) Genome , vol.39 , pp. 969-977
    • Mackill, D.J.1    Zhang, Z.2    Redona, E.D.3    Colowit, P.M.4
  • 55
  • 57
    • 10244260396 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism (AFLP) in soybean: Species diversity, inheritance, and near-isogenic line analysis
    • Maughan PJ,MaroofMAS, Buss GR, HuetisGM(1996) Amplified fragment length polymorphism (AFLP) in soybean: species diversity, inheritance, and near-isogenic line analysis. Theor Appl Genet 93:392-401
    • (1996) Theor Appl Genet , vol.93 , pp. 392-401
    • Maughan, P.J.1    Maroof, M.A.S.2    Buss, G.R.3    Huetis, G.M.4
  • 58
    • 85167693926 scopus 로고    scopus 로고
    • Development, characterization and linkage mapping of single nucleotide polymorphisms in the grain Amaranths (Amaranthus sp.)
    • Maughan PJ, Smith SM, Fairbanks DJ, Jellen EN (2011) Development, characterization and linkage mapping of single nucleotide polymorphisms in the grain Amaranths (Amaranthus sp.). Plant Genome 4:92-101
    • (2011) Plant Genome , vol.4 , pp. 92-101
    • Maughan, P.J.1    Smith, S.M.2    Fairbanks, D.J.3    Jellen, E.N.4
  • 63
    • 79952447036 scopus 로고    scopus 로고
    • Population structure and linkage disequilibrium in oat (Avena sativa L.): Implications for genome-wide association studies
    • Newell MA, Cook D, Tinker NA, Jannink JL (2011) Population structure and linkage disequilibrium in oat (Avena sativa L.): implications for genome-wide association studies. Theor Appl Genet 122:623-632
    • (2011) Theor Appl Genet , vol.122 , pp. 623-632
    • Newell, M.A.1    Cook, D.2    Tinker, N.A.3    Jannink, J.L.4
  • 64
    • 2342505879 scopus 로고    scopus 로고
    • Genetic diversity estimates in Cicer using AFLP analysis
    • Nguyen TT, Taylor PWJ, Redden RJ, Ford R (2003) Genetic diversity estimates in Cicer using AFLP analysis. Plant Breed 123:173-179
    • (2003) Plant Breed , vol.123 , pp. 173-179
    • Nguyen, T.T.1    Taylor, P.W.J.2    Redden, R.J.3    Ford, R.4
  • 67
    • 84857520461 scopus 로고    scopus 로고
    • Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
    • Poland JA, Brown PJ, Sorrells ME, Jannink J-L (2012) Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One 7:e32253
    • (2012) PLoS One , vol.7 , pp. e32253
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.-L.4
  • 68
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5:94-100
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 72
    • 33747835649 scopus 로고    scopus 로고
    • Distribution of DArT, AFLP and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population
    • Semagn K, Bjornstad A, Skinnes H, Maroy AG, Tarkegne Y, William M (2006) Distribution of DArT, AFLP and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population. Genome 49:545-555
    • (2006) Genome , vol.49 , pp. 545-555
    • Semagn, K.1    Bjornstad, A.2    Skinnes, H.3    Maroy, A.G.4    Tarkegne, Y.5    William, M.6
  • 73
    • 0033034424 scopus 로고    scopus 로고
    • Conversion of AFLP markers to sequence-specific PCR markers in barley and wheat
    • Shan X, Blake TK, Talbert LE (1999) Conversion of AFLP markers to sequence-specific PCR markers in barley and wheat. Theor Appl Genet 98:1072-1078
    • (1999) Theor Appl Genet , vol.98 , pp. 1072-1078
    • Shan, X.1    Blake, T.K.2    Talbert, L.E.3
  • 74
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J, Ji H (2008) Next-generation DNA sequencing. Nat Biotechnol 26:1135-1145
    • (2008) Nat Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 75
    • 0030982893 scopus 로고    scopus 로고
    • Construction of a chickpea linkage map and its comparison with maps of pea and lentil
    • Simon CJ, Muehlbauer FJ (1997) Construction of a chickpea linkage map and its comparison with maps of pea and lentil. J Hered 88:115-119
    • (1997) J Hered , vol.88 , pp. 115-119
    • Simon, C.J.1    Muehlbauer, F.J.2
  • 76
    • 0036934757 scopus 로고    scopus 로고
    • AFLP and pedigree-based genetic diversity estimates in modern cultivars of durum wheat [Triticum turgidum L
    • Soleimani VD, Baum BR, Johnson DA (2002) AFLP and pedigree-based genetic diversity estimates in modern cultivars of durum wheat [Triticum turgidum L. sub sp. durum (Desf.) Husn.]. Theor Appl Genet 104:350-357
    • (2002) Sub Sp. Durum (Desf.) Husn.]. Theor Appl Genet , vol.104 , pp. 350-357
    • Soleimani, V.D.1    Baum, B.R.2    Johnson, D.A.3
  • 77
    • 33847057776 scopus 로고    scopus 로고
    • Whole genome genotyping technologies on the BeadArray platform
    • Steemers FJ, Gunderson KL (2007) Whole genome genotyping technologies on the BeadArray platform. Biotechnol J 2:41-49
    • (2007) Biotechnol J , vol.2 , pp. 41-49
    • Steemers, F.J.1    Gunderson, K.L.2
  • 79
    • 20044369371 scopus 로고    scopus 로고
    • Towards genome-wide SNP genotyping
    • Syvanen A (2005) Towards genome-wide SNP genotyping. Nat Genet 37:S5-S10
    • (2005) Nat Genet , vol.37 , pp. S5-S10
    • Syvanen, A.1
  • 80
    • 51249185772 scopus 로고
    • Molecular markers in plant breeding
    • Tanksley SD (1983) Molecular markers in plant breeding. Plant Mol Biol Rep 1:3-8
    • (1983) Plant Mol Biol Rep , vol.1 , pp. 3-8
    • Tanksley, S.D.1
  • 85
    • 79953306241 scopus 로고    scopus 로고
    • Sequence-based physical mapping of complex genomes by whole genome profiling
    • van Oeveren J, de Ruiter M, Jesse T, van der Poel H, Tang J et al (2011) Sequence-based physical mapping of complex genomes by whole genome profiling. Genome Res 21:618-625
    • (2011) Genome Res , vol.21 , pp. 618-625
    • Van Oeveren, J.1    De Ruiter, M.2    Jesse, T.3    Van Der Poel, H.4    Tang, J.5
  • 86
    • 84900181794 scopus 로고    scopus 로고
    • Gene-based marker systems in plants: High throughput approaches for marker discovery and genotyping
    • Jain SM, Brar DS (eds). Springer, Dordrecht
    • Varshney RK (2010) Gene-based marker systems in plants: high throughput approaches for marker discovery and genotyping. In: Jain SM, Brar DS (eds) Molecular techniques in crop improvement. Springer, Dordrecht, pp 119-142
    • (2010) Molecular Techniques in Crop Improvement , pp. 119-142
    • Varshney, R.K.1
  • 87
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: Features and applications
    • Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. Trends Biotechnol 23:48-55
    • (2005) Trends Biotechnol , vol.23 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 88
    • 68949186256 scopus 로고    scopus 로고
    • Next generation sequencing technologies and their implications for crop genetics and breeding
    • Varshney RK, Nayak SN, May GD, Jackson SA (2009) Next generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol 27:522-530
    • (2009) Trends Biotechnol , vol.27 , pp. 522-530
    • Varshney, R.K.1    Nayak, S.N.2    May, G.D.3    Jackson, S.A.4
  • 90
    • 38349089923 scopus 로고    scopus 로고
    • The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome
    • White J, Law JR, MacKay KJ, Chalmers KJ, Smith JSC, Kilian A, Powell W (2008) The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome. Theor Appl Genet 116:439-453
    • (2008) Theor Appl Genet , vol.116 , pp. 439-453
    • White, J.1    Law, J.R.2    Mackay, K.J.3    Chalmers, K.J.4    Smith, J.S.C.5    Kilian, A.6    Powell, W.7
  • 93
    • 5144227241 scopus 로고    scopus 로고
    • Conversion of AFLP markers associated with FHB resistance in wheat into STS markers with an extension-AFLP method
    • Xu DH, Ban T (2004) Conversion of AFLP markers associated with FHB resistance in wheat into STS markers with an extension-AFLP method. Genome 47:660-665
    • (2004) Genome , vol.47 , pp. 660-665
    • Xu, D.H.1    Ban, T.2
  • 95
    • 0032854052 scopus 로고    scopus 로고
    • DNA methylation and AFLP marker distribution in the soybean genome
    • Young WP, Schupp JM, Keim P (1999) DNA methylation and AFLP marker distribution in the soybean genome. Theor Appl Genet 99:785-792
    • (1999) Theor Appl Genet , vol.99 , pp. 785-792
    • Young, W.P.1    Schupp, J.M.2    Keim, P.3
  • 96
    • 61449191758 scopus 로고    scopus 로고
    • Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa
    • Zhou X, Sunkar R, Jin H, Zhu JK, Zhang W (2009) Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Res 19:70-80
    • (2009) Genome Res , vol.19 , pp. 70-80
    • Zhou, X.1    Sunkar, R.2    Jin, H.3    Zhu, J.K.4    Zhang, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.