Conversion of AFLP markers to sequence-specific PCR markers in barley and wheat

Theoretical and Applied Genetics

Volumn 98, Issue 6-7, 1999, Pages 1072-1078

  Shan, X ^a   Blake, T K ^a   Talbert, L E ^a  

^a MONTANA STATE UNIVERSITY   (United States)

Author keywords

Amplified fragment length polymorphism (AFLP); Barley (Hordeum vulgare L.); Wheat (Triticum aestivum L.)

Indexed keywords

ADDITION LINE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; CHROMOSOMAL LOCALIZATION; GENETIC LINKAGE; GENETIC MARKER; MOLECULAR CLONING; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIMER DNA;

HORDEUM VULGARE; TRITICUM AESTIVUM;

EID: 0033034424     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051169     Document Type: Article

References (41)

1. Ajmone Marsan P, Castiglioni P, Fusari F, Kuiper M, Motto M (1998) Genetic diversity and its relationship to hybrid performance in maize as revealed by RFLP and AFLP markers. Theor Appl Genet 96:219-227
2. Ballvora A, Hesselbach J, Niewohner J, Leister D, Salamini F, Gebhardt C (1995) Marker enrichment and high-resolution map of the segment of potato chromosome VII harbouring the nematode resistance gene Grol. Mol Gen Genet 249:82-90
3. Barrett BA, Kidwell KK (1998) AFLP-based genetic diversity assessment among wheat cultivars from the Pacific Northwest. Crop Sci 38:1261-1271
4. Barrett BA, Kidwell KK, Fox PN (1998) Comparison of AFLP and pedigree-based genetic diversity assessment methods using wheat cultivars from the Pacific Northwest. Crop Sci 38:1271-1278
5. Becker J, Vos P, Kuiper M, Salamini F, Heun M (1995) Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249:65-73
6. Blake TK, Kadyrzhanova D, Shepherd KW, Islam RKML, Langridge PL, McDonald CL, Erpelding J, Larson S, Blake NK, Talbert LE (1996) STS-PCR markers appropriate for wheat-barley introgression. Theor Appl Genet 93:826-832
7. Bradshaw HD, Villar M, Watson BD, Otto KG, Stewart S, Stettler RF (1994) Molecular genetics of growth and development in Populus. III. A genetic linkage map of a hybrid poplar composed of RFLP, STS, and RAPD markers. Theor Appl Genet 89: 167-178
8. Brady JL, Scott NS, Thomas MR (1996) DNA typing of hops (Humulus lupulus) through application of RAPD and microsatellite marker sequences converted to sequence tagged sites (STSs). Euphytica 91:277-284
9. Burkhamer RL, Lanning SP, Martens RJ, Martin JM, Talbert LE (1998) Predicting progeny variance from parental divergence in hard red spring wheat. Crop Sci 38:243-248
10. Cheung WY, Champagne G, Hubert N, Landry BS (1997) Comparison of the genetic maps of Brassica napus and Brassica oleracea. Theor Appl Genet 94:569-582
11. Cho YG, Blair MW, Panaud O, McCouch SR (1996) Cloning and mapping of variety specific rice genomic DNA sequences: amplified fragment length polymorphisms (AFLPs) from silver-stained polyacrylamide gels. Genome 39:373-378
12. Dellaporta SL, Wood J, Hicks JB (1998) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1:19-21
13. Ellis RP, McNicol JW, Baird E, Booth A, Lawrence P, Thomas B, Powell W (1997) The use of AFLPs to examine genetic relatedness in barley. Mol Breed 3:359-369
14. Erpelding JE, Blake NK, Blake TK, Talbert LE (1996) Transfer of sequence tagged site PCR markers between wheat and barley. Genome 39:802-810
15. Gaiotto FA, Bramucci, Grattapaglia D (1997) Estimation of outcrossing rate in a breeding population of Eucalyptus urophylla with dominant RAPD and AFLP markers. Theor Appl Genet 95:842-849
16. Hill M, Witsenboer H, Zabeau M, Vos P, Kesseli R, Michelmore R (1996) PCR-based fingerprinting using AFLPs as a tool for studying genetic relationships in Lactuca spp. Theor Appl Genet 93:1202-1210
17. Hongtrakul V, Huestis GM, Knapp SJ (1997) Amplified fragment length polymorphisms as a tool for DNA fingerprinting sunflower germplasm: genetic diversity among oilseed inbred lines. Theor Appl Genet 95:400-407
18. Jones CJ, Edwards KJ, Castaglione S, Winfleld MO, Sala F, Van de Wiel C, Bredemeijer G, Vosman B, Matthes M, Daly A, Brettschneider R, Bettini P, Buiatti M, Maestri E, Malcevschi A, Marmiroli, Aert R, Volckaert G, Rueda J, Linacero R, Vazquez A, Karp A (1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3:381-390
19. Keim P, Schupp JM, Travis SE, Clayton K, Zhu T, Shi Liang, Ferreira A, Webb DM (1997) A high-density soybean genetic map based on AFLP markers. Crop Sci 37:537-543
20. Lu J, Knox MR, Ambrose MJ, Brown JKM, Ellis THN (1996) Comparative analysis of genetic diversity in pea assessed by RFLP- and PCR-based methods. Theor Appl Genet 93: 1103-1111
21. Maheswaran M, Subudhi PK, Nandi S, Xu JC, Parco A, Yang DC, Huang N (1997) Polymorphism, distribution, and segregation of AFLP markers in a doubled-haploid rice population. Theor Appl Genet 94:39-45
22. Meksem K, Leister D, Peleman J, Zabeau M, Salamini F, Gebhardt C (1995) A high-resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers. Mol Gen Genet 249:74-81
23. Nelson JC, Van Deynze AE, Autrique E, Sorrells ME, Lu YH, Merlino M, Atkinson M, Leroy P (1995) Molecular mapping of wheat. Homoeologous group 2. Genome 38:516-524
24. Pakniyat H, Powell W, Baird E, Handley LL, Robinson D, Scrimgeour CM, Nevo E, Hackett CA, Caligari PDS, Forster BP (1997) AFLP variation in wild barley (Hordeum spontaneum C. Koch) with reference to salt tolerance and associated ecogeography. Genome 40:332-341
25. Powell W, Thomas WTB, Baird E, Lawrence P, Booth A, Harrower B, McNicol JW, Waugh R (1997) Analysis of quantitative traits in barley by the use of amplified fragment length polymorphisms. Heredity 79:48-59
26. Qi X, Lindhout P (1997) Development of AFLP markers in barley. Mol Gen Genet 254:330-336
27. Qu LJ, Foote TN, Roberts MA, Money TA, Aragon-Alcaide L, Snape JW, Moore G (1998) A simple PCR-based method for scoring the phlb deletion in wheat. Theor Appl Genet 96: 371-375
28. Roa AC, Maya MM, Duque MC, Tohme J, Allem AC, Bonierbale MW (1997) AFLP analysis of relationships among cassava and other Manihot species. Theor Appl Genet 95:741-750
29. Rouppe van der Voort J, Wolters P, Folkertsma R, Hutten R, van Zandvoort P, Vinke H, Kanyuka K, Bendahmane A, Jacobsen E, Janssen R, Bakker J (1997) Mapping of the cyst nematode resistance locus Gpa2 in potato using a strategy based on co-migrating AFLP markers. Theor Appl Genet 95:874-880
30. Rychlik W, Rhoads RE (1989) A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA. Nucleic Acids Res 17: 85443-85551
31. pat-1) on chromosome 1 of B. patellaris. Theor Appl Genet 90:885-891
32. Sears ER (1954) The aneuploids of common wheat. Res Bull Mo Agric Exp Stn 472
33. Schut JW, Qi X, Stam P (1997) Association between relationship measures based on AFLP markers, pedigree data and morphological traits in barley. Theor Appl Genet 95:1161-1168
34. Shepherd KW, Islam AKMR (1981) Wheat:barley hybrids - the first eighty years. In: Evans LT, Peacock WJ (eds) Wheat science today and tomorrow. Cambridge University Press, New York, pp 107-128
35. Talbert LE, Blake NK, Chee PW, Blake TK, Magyar GM (1994) Evaluation of "sequence-tagged-site" PCR products as molecular markers in wheat. Theor Appl Genet 87:789-794
36. Talbert LE, Bruckner PL, Smith LY, Sears R, Martin TJ (1996) Development of PCR markers linked to resistance to wheat streat mosaic virus in wheat. Theor Appl Genet 93:463-467
37. Thomas CM, Vos P, Zabeau M, Jones DA, Norcott KA, Chadwick BP, Jones JDG (1995) Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum. Plant J 8:785-794
38. VanToai TT, Peng J, St Martin SK (1997) Using AFLP markers to determine the genomic contribution of parents to populations. Crop Sci 37:1370-1373
39. Vos P, Hogers R, Bleeker M, Reijans M, Lee TVD, Homes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
40. Wang YH, Thomas CE, Dean RA (1997) A genetic map of melon (Cucumis tnelo L.) based on amplified fragment length polymorphism (AFLP) markers. Theor Appl Genet 95:791-798
41. Zhao S, Ooi SL, Yang F-C, Pardee AB (1996) Three methods for identification of true positive cloned cDNA fragments in differential display. BioTechniques 20:400-404