Interaction between Two Timing MicroRNAs Controls Trichome Distribution in Arabidopsis

PLoS Genetics

Volumn 10, Issue 4, 2014, Pages

  Xue, Xue Yi ^a,b   Zhao, Bo ^a,b   Chao, Lu Men ^a,b   Chen, Dian Yang ^a,b   Cui, Wen Rui ^a,b   Mao, Ying Bo ^a   Wang, Ling Jian ^a   Chen, Xiao Ya ^a,c  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c Plant Science Research Center   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 156; MICRORNA 171; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; MIRN156 MICRORNA, ARABIDOPSIS; MIRN171 MICRORNA, ARABIDOPSIS; NUCLEAR PROTEIN; REPRESSOR PROTEIN; SPL PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

AMINO TERMINAL SEQUENCE; ARABIDOPSIS THALIANA; ARTICLE; CELL POLARITY; CONTROLLED STUDY; FLOWER; GENE CONTROL; GENE INTERACTION; GENE OVEREXPRESSION; GENE TARGETING; LOM1 GENE; LOM2 GENE; LOM3 GENE; MERISTEM; MIR156 GENE; MIR171 GENE; NONHUMAN; PHASE TRANSITION; PHOTOMORPHOGENESIS; PLANT GENE; PLANT GROWTH; PLANT STEM; REGULATORY MECHANISM; REPRESSOR GENE; SPL GENE; TCL1 GNE; TRANSCRIPTION INITIATION; TRICHOME; TRICHOME DISTRIBUTION; TRY GENE; ARABIDOPSIS; GENE EXPRESSION REGULATION; GENETICS; MORPHOGENESIS; PROMOTER REGION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL POLARITY; FLOWERS; GENE EXPRESSION REGULATION, PLANT; MICRORNAS; MORPHOGENESIS; NUCLEAR PROTEINS; PLANT STEMS; PROMOTER REGIONS, GENETIC; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS; TRICHOMES;

EID: 84901336527     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004266     Document Type: Article

References (56)

1. Lee RC, Feinbaum RL, Ambros V, (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
2. Wang JW, Czech B, Weigel D, (2009) miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell 138: 738-749.
3. Wu G, Park MY, Conway SR, Wang JW, Weigel D, et al. (2009) The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 138: 750-759.
4. Wu G, Poethig RS, (2006) Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. Development 133: 3539-3547.
5. Yu S, Galvao VC, Zhang YC, Horrer D, Zhang TQ, et al. (2012) Gibberellin regulates the Arabidopsis floral transition through miR156-targeted SQUAMOSA PROMOTER BINDING-LIKE transcription factors. Plant Cell 24: 3320-3332.
6. Lawson EJ, Poethig RS, (1995) Shoot development in plants: time for a change. Trends Genet 11: 263-268.
7. Telfer A, Bollman KM, Poethig RS, (1997) Phase change and the regulation of trichome distribution in Arabidopsis thaliana. Development 124: 645-654.
8. Payne CT, Zhang F, Lloyd AM, (2000) GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1. Genetics 156: 1349-1362.
9. Pesch M, Hulskamp M, (2004) Creating a two-dimensional pattern de novo during Arabidopsis trichome and root hair initiation. Curr Opin Genet Dev 14: 422-427.
10. Ramsay NA, Glover BJ, (2005) MYB-bHLH-WD40 protein complex and the evolution of cellular diversity. Trends Plant Sci 10: 63-70.
11. Rerie WG, Feldmann KA, Marks MD, (1994) The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis. Genes Dev 8: 1388-1399.
12. Ishida T, Kurata T, Okada K, Wada T, (2008) A genetic regulatory network in the development of trichomes and root hairs. Annu Rev Plant Biol 59: 365-386.
13. Esch JJ, Chen MA, Hillestad M, Marks MD, (2004) Comparison of TRY and the closely related At1g01380 gene in controlling Arabidopsis trichome patterning. Plant J 40: 860-869.
14. Wada T, Tachibana T, Shimura Y, Okada K, (1997) Epidermal cell differentiation in Arabidopsis determined by a Myb homolog, CPC. Science 277: 1113-1116.
15. Schellmann S, Schnittger A, Kirik V, Wada T, Okada K, et al. (2002) TRIPTYCHON and CAPRICE mediate lateral inhibition during trichome and root hair patterning in Arabidopsis. EMBO J 21: 5036-5046.
16. Kirik V, Simon M, Huelskamp M, (2004) Schiefelbein J (2004) The ENHANCER OF TRY AND CPC1 gene acts redundantly with TRIPTYCHON and CAPRICE in trichome and root hair cell patterning in Arabidopsis. Dev Biol 268: 506-513.
17. Kirik V, Simon M, Wester K, Schiefelbein J, Hulskamp M, (2004) ENHANCER of TRY and CPC 2 (ETC2) reveals redundancy in the region-specific control of trichome development of Arabidopsis. Plant Mol Biol 55: 389-398.
18. Simon M, Lee MM, Lin Y, Gish L, Schiefelbein J, (2007) Distinct and overlapping roles of single-repeat MYB genes in root epidermal patterning. Dev Biol 311: 566-578.
19. Wang S, Kwak SH, Zeng Q, Ellis BE, Chen XY, et al. (2007) TRICHOMELESS1 regulates trichome patterning by suppressing GLABRA1 in Arabidopsis. Development 134: 3873-3882.
20. Gan L, Xia K, Chen JG, Wang S, (2011) Functional characterization of TRICHOMELESS2, a new single-repeat R3 MYB transcription factor in the regulation of trichome patterning in Arabidopsis. BMC Plant Biol 11: 176.
21. Tominaga-Wada R, Nukumizu Y, (2012) Expression Analysis of an R3-Type MYB Transcription Factor CPC-LIKE MYB4 (TRICHOMELESS2) and CPL4-Related Transcripts in Arabidopsis. Int J Mol Sci 13: 3478-3491.
22. Qi T, Song S, Ren Q, Wu D, Huang H, et al. (2011) The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate Jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. Plant Cell 23: 1795-1814.
23. Yu N, Cai WJ, Wang S, Shan CM, Wang LJ, et al. (2010) Temporal control of trichome distribution by microRNA156-targeted SPL genes in Arabidopsis thaliana. Plant Cell 22: 2322-2335.
24. Stuurman J, Jaggi F, Kuhlemeier C, (2002) Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev 16: 2213-2218.
25. Engstrom EM, Andersen CM, Gumulak-Smith J, Hu J, Orlova E, et al. (2011) Arabidopsis homologs of the Petunia HAIRY MERISTEM gene are required for maintenance of shoot and root indeterminacy. Plant Physiol 155: 735-750.
26. Wang L, Mai YX, Zhang YC, Luo Q, Yang HQ, (2010) MicroRNA171c-targeted SCL6-II, SCL6-III, and SCL6-IV genes regulate shoot branching in Arabidopsis. Mol Plant 3: 794-806.
27. Llave C, Xie Z, Kasschau KD, Carrington JC, (2002) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
28. Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, et al. (2002) Prediction of plant microRNA targets. Cell 110: 513-520.
29. Schulze S, Schafer BN, Parizotto EA, Voinnet O, Theres K, (2010) LOST MERISTEMS genes regulate cell differentiation of central zone descendants in Arabidopsis shoot meristems. Plant J 64: 668-678.
30. Gan Y, Kumimoto R, Liu C, Ratcliffe O, Yu H, et al. (2006) GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis. Plant Cell 18: 1383-1395.
31. Zhou Z, An L, Sun L, Gan Y, (2012) ZFP5 encodes a functionally equivalent GIS protein to control trichome initiation. Plant Signal Behav 7: 28-30.
32. Zhou Z, Sun L, Zhao Y, An L, Yan A, et al. (2013) Zinc Finger Protein 6 (ZFP6) regulates trichome initiation by integrating gibberellin and cytokinin signaling in Arabidopsis thaliana. New Phytol 198: 699-708.
33. Engstrom EM, (2011) Phylogenetic analysis of GRAS proteins from moss, lycophyte and vascular plant lineages reveals that GRAS genes arose and underwent substantial diversification in the ancestral lineage common to bryophytes and vascular plants. Plant Signal Behav 6: 850-854.
34. Shikata M, Koyama T, Mitsuda N, Ohme-Takagi M, (2009) Arabidopsis SBP-box genes SPL10, SPL11 and SPL2 control morphological change in association with shoot maturation in the reproductive phase. Plant Cell Physiol 50: 2133-2145.
35. Smith-Vikos T, Slack FJ, (2012) MicroRNAs and their roles in aging. Journal of Cell Science 125: 7-17.
36. de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, et al. (2010) MicroRNAs both promote and antagonize longevity in C. elegans. Curr Biol 20: 2159-2168.
37. Murase K, Hirano Y, Sun TP, Hakoshima T, (2008) Gibberellin-induced DELLA recognition by the gibberellin receptor GID1. Nature 456: 459-463.
38. Griffiths J, Murase K, Rieu I, Zentella R, Zhang ZL, et al. (2006) Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis. Plant Cell 18: 3399-3414.
39. Sun TP, (2011) The molecular mechanism and evolution of the GA-GID1-DELLA signaling module in plants. Curr Biol 21: R338-345.
40. Liu HH, Tian X, Li YJ, Wu CA, Zheng CC, (2008) Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14: 836-843.
41. Zhou L, Liu Y, Liu Z, Kong D, Duan M, et al. (2010) Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot 61: 4157-4168.
42. Zhao M, Tai H, Sun S, Zhang F, Xu Y, et al. (2012) Cloning and characterization of maize miRNAs involved in responses to nitrogen deficiency. PLoS One 7: e29669.
43. Liang G, He H, Yu D, (2012) Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana. PLoS One 7: e48951.
44. Manavella PA, Koenig D, Rubio-Somoza I, Burbano HA, Becker C, et al. (2013) Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. Plant Physiol 161: 805-812.
45. Axtell MJ, Snyder JA, Bartel DP, (2007) Common functions for diverse small RNAs of land plants. Plant Cell 19: 1750-1769.
46. Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, et al. (2010) OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat Genet 42: 545-549.
47. Jiao Y, Wang Y, Xue D, Wang J, Yan M, et al. (2010) Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat Genet 42: 541-544.
48. Wang K, Wang Z, Li F, Ye W, Wang J, et al. (2012) The draft genome of a diploid cotton Gossypium raimondii. Nat Genet 44: 1098-1103.
49. Curaba J, Talbot M, Li Z, Helliwell C, (2013) Over-expression of microRNA171 affects phase transitions and floral meristem determinancy in barley. BMC Plant Biol 13: 6.
50. Wang JW, Schwab R, Czech B, Mica E, Weigel D, (2008) Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell 20: 1231-1243.
51. Gou JY, Felippes FF, Liu CJ, Weigel D, Wang JW, (2011) Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. Plant Cell 23: 1512-1522.
52. Chen H, Zou Y, Shang Y, Lin H, Wang Y, et al. (2008) Firefly luciferase complementation imaging assay for protein-protein interactions in plants. Plant Physiol 146: 368-376.
53. Papp I, Mette MF, Aufsatz W, Daxinger L, Schauer SE, et al. (2003) Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors. Plant Physiol 132: 1382-1390.
54. Hong GJ, Xue XY, Mao YB, Wang LJ, Chen XY, (2012) Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression. Plant Cell 24: 2635-2648.
55. Banerjee R, Schleicher E, Meier S, Viana RM, Pokorny R, et al. (2007) The signaling state of Arabidopsis cryptochrome 2 contains flavin semiquinone. J Biol Chem 282: 14916-14922.
56. Arnon DI, (1949) Copper enzymes in isolated chloroplasts: Polyphenol oxidase in Beta vulgaris. Plant Physiol 24: 1-15.