-
3
-
-
0035783061
-
Protein repeats: Structures, functions, and evolution
-
Andrade MA, Perez-Iratxeta C, Ponting CP (2001) Protein repeats: structures, functions, and evolution. Journal of structural biology 134: 117-131.
-
(2001)
Journal of Structural Biology
, vol.134
, pp. 117-131
-
-
Andrade, M.A.1
Perez-Iratxeta, C.2
Ponting, C.P.3
-
4
-
-
79953890803
-
The structural biology of Toll-like receptors
-
Botos I, Segal DM, Davies DR (2011) The structural biology of Toll-like receptors. Structure 19: 447-459.
-
(2011)
Structure
, vol.19
, pp. 447-459
-
-
Botos, I.1
Segal, D.M.2
Davies, D.R.3
-
5
-
-
23044475553
-
A recurring theme in protein engineering: The design, stability and folding of repeat proteins
-
DOI 10.1016/j.sbi.2005.07.003, PII S0959440X05001259, Membranes/Engineering and Desing
-
Main ER, Lowe AR, Mochrie SG, Jackson SE, Regan L (2005) A recurring theme in protein engineering: the design, stability and folding of repeat proteins. Current opinion in structural biology 15: 464-471. (Pubitemid 41073839)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.4
, pp. 464-471
-
-
Main, E.R.G.1
Lowe, A.R.2
Mochrie, S.G.J.3
Jackson, S.E.4
Regan, L.5
-
6
-
-
61849158225
-
Analysis of Repeat-Protein Folding Using Nearest-Neighbor Statistical Mechanical Models
-
Aksel T, Barrick D (2009) Analysis of Repeat-Protein Folding Using Nearest-Neighbor Statistical Mechanical Models. Methods in enzymology 455: 95-125.
-
(2009)
Methods in Enzymology
, vol.455
, pp. 95-125
-
-
Aksel, T.1
Barrick, D.2
-
7
-
-
41649094854
-
Structural insights into an equilibrium folding intermediate of an archaeal ankyrin repeat protein
-
DOI 10.1073/pnas.0710657105
-
Löw C, Weininger U, Neumann P, Klepsch M, Lilie H, et al. (2008) Structural insights into an equilibrium folding intermediate of an archaeal ankyrin repeat protein. Proceedings of the National Academy of Sciences 105: 3779-3784. (Pubitemid 351723475)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.10
, pp. 3779-3784
-
-
Low, C.1
Weininger, U.2
Neumann, P.3
Klepsch, M.4
Lilie, H.5
Stubbs, M.T.6
Balbach, J.7
-
8
-
-
80054856259
-
DARPins and other repeat protein scaffolds: Advances in engineering and applications
-
Boersma YL, Plückthun A (2011) DARPins and other repeat protein scaffolds: advances in engineering and applications. Current opinion in biotechnology 22: 849-857.
-
(2011)
Current Opinion in Biotechnology
, vol.22
, pp. 849-857
-
-
Boersma, Y.L.1
Plückthun, A.2
-
9
-
-
27144511241
-
Engineering novel binding proteins from nonimmunoglobulin domains
-
DOI 10.1038/nbt1127, PII N1127
-
Binz HK, Amstutz P, Plückthun A (2005) Engineering novel binding proteins from nonimmunoglobulin domains. Nature biotechnology 23: 1257-1268. (Pubitemid 41486853)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.10
, pp. 1257-1268
-
-
Binz, H.K.1
Amstutz, P.2
Pluckthun, A.3
-
10
-
-
84863229636
-
Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering
-
Lee S-C, Park K, Han J, Lee J-j, Kim HJ, et al. (2012) Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering. Proceedings of the National Academy of Sciences 109: 3299-3304.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, pp. 3299-3304
-
-
Lee, S.-C.1
Park, K.2
Han, J.3
Lee, J.-J.4
Kim, H.J.5
-
11
-
-
29344475707
-
Immunology: Diversity and function of adaptive immune receptors in a jawless vertebrate
-
DOI 10.1126/science.1119420
-
Alder MN, Rogozin IB, Iyer LM, Glazko GV, Cooper MD, et al. (2005) Diversity and function of adaptive immune receptors in a jawless vertebrate. Science 310: 1970-1973. (Pubitemid 43005993)
-
(2005)
Science
, vol.310
, Issue.5756
, pp. 1970-1973
-
-
Alder, M.N.1
Rogozin, I.B.2
Iyer, L.M.3
Glazko, G.V.4
Cooper, M.D.5
Pancer, Z.6
-
12
-
-
0035692811
-
The leucine-rich repeat as a protein recognition motif
-
DOI 10.1016/S0959-440X(01)00266-4
-
Kobe B, Kajava AV (2001) The leucine-rich repeat as a protein recognition motif. Current opinion in structural biology 11: 725-732. (Pubitemid 34076634)
-
(2001)
Current Opinion in Structural Biology
, vol.11
, Issue.6
, pp. 725-732
-
-
Kobe, B.1
Kajava, A.V.2
-
14
-
-
0028961901
-
Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase
-
Chan MK, Mukund S, Kletzin A, Adams M, Rees DC (1995) Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase. Science 267: 1463.
-
(1995)
Science
, vol.267
, pp. 1463
-
-
Chan, M.K.1
Mukund, S.2
Kletzin, A.3
Adams, M.4
Rees, D.C.5
-
16
-
-
55949131241
-
Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding
-
Hua L, Zhou R, Thirumalai D, Berne B (2008) Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding. Proceedings of the National Academy of Sciences 105: 16928-16933.
-
(2008)
Proceedings of the National Academy of Sciences
, vol.105
, pp. 16928-16933
-
-
Hua, L.1
Zhou, R.2
Thirumalai, D.3
Berne, B.4
-
17
-
-
37549043949
-
Interaction of urea with amino acids: Implications for urea-induced protein denaturation
-
Stumpe MC, Grubmuller H (2007) Interaction of urea with amino acids: implications for urea-induced protein denaturation. Journal of the American Chemical Society 129: 16126-16131.
-
(2007)
Journal of the American Chemical Society
, vol.129
, pp. 16126-16131
-
-
Stumpe, M.C.1
Grubmuller, H.2
-
18
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
DOI 10.1006/jmbi.1993.1413
-
Rost B, Sander C (1993) Prediction of protein secondary structure at better than 70% accuracy. Journal of molecular biology 232: 584-599. (Pubitemid 23251181)
-
(1993)
Journal of Molecular Biology
, vol.232
, Issue.2
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
19
-
-
79551599747
-
Communication: Free-energy analysis of hydration effect on protein with explicit solvent: Equilibrium fluctuation of cytochrome c
-
041105
-
Karino Y, Matubayasi N (2011) Communication: Free-energy analysis of hydration effect on protein with explicit solvent: Equilibrium fluctuation of cytochrome c. The Journal of Chemical Physics 134: 041105-041105-041104.
-
(2011)
The Journal of Chemical Physics
, vol.134
, pp. 041105-041104
-
-
Karino, Y.1
Matubayasi, N.2
-
20
-
-
79953186583
-
How PEGylation enhances the stability and potency of insulin: A molecular dynamics simulation
-
Yang C, Lu D, Liu Z (2011) How PEGylation enhances the stability and potency of insulin: a molecular dynamics simulation. Biochemistry.
-
(2011)
Biochemistry.
-
-
Yang, C.1
Lu, D.2
Liu, Z.3
-
22
-
-
84874757119
-
-
Department of Biophysical Chemistry, University of Groningen Nijenborgh
-
Van der Spoel D, Lindahl E, Hess B, van Buuren A, Apol E, et al. (2006) GROMACS user manual version 3.3. Department of Biophysical Chemistry, University of Groningen Nijenborgh 4: 9747.
-
(2006)
GROMACS User Manual Version 3.3
, vol.4
, pp. 9747
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Van Buuren, A.4
Apol, E.5
-
23
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force field parameter sets 53A5 and 53A6
-
Oostenbrink C, Villa A, Mark AE, Van Gunsteren WF (2004) A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force field parameter sets 53A5 and 53A6. Journal of Computational Chemistry 25: 1656-1676.
-
(2004)
Journal of Computational Chemistry
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
25
-
-
0000388705
-
LINCS: A Linear Constraint Solver for molecular simulations
-
Hess B, Bekker H, Berendsen H, Fraaije J (1997) LINCS: a linear constraint solver for molecular simulations. Journal of Computational Chemistry 18: 1463-1472. (Pubitemid 127637344)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.12
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
26
-
-
33846823909
-
Particle mesh Ewald: An N log (N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L (1993) Particle mesh Ewald: An N log (N) method for Ewald sums in large systems. The Journal of Chemical Physics 98: 10089.
-
(1993)
The Journal of Chemical Physics
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
27
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, et al. (2003) A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. Journal of Computational Chemistry 24: 1999-2012.
-
(2003)
Journal of Computational Chemistry
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
-
28
-
-
20544435097
-
Exploring the helix-coil transition via all-atom equilibrium ensemble simulations
-
DOI 10.1529/biophysj.104.051938
-
Sorin EJ, Pande VS (2005) Exploring the helix-coil transition via all-atom equilibrium ensemble simulations. Biophysical Journal 88: 2472-2493. (Pubitemid 40976118)
-
(2005)
Biophysical Journal
, vol.88
, Issue.4
, pp. 2472-2493
-
-
Sorin, E.J.1
Pande, V.S.2
-
29
-
-
0037089015
-
Calculation of the free energy of solvation for neutral analogs of amino acid side chains
-
DOI 10.1002/jcc.10052
-
Villa A, Mark AE (2002) Calculation of the free energy of solvation for neutral analogs of amino acid side chains. Journal of computational chemistry 23: 548-553. (Pubitemid 34409035)
-
(2002)
Journal of Computational Chemistry
, vol.23
, Issue.5
, pp. 548-553
-
-
Villa, A.1
Mark, A.E.2
-
30
-
-
7044239742
-
Free energy calculations: Applications to chemical and biochemical phenomena
-
Kollman P (1993) Free energy calculations: applications to chemical and biochemical phenomena. Chemical Reviews 93: 2395-2417.
-
(1993)
Chemical Reviews
, vol.93
, pp. 2395-2417
-
-
Kollman, P.1
-
31
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometrical features
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|