-
1
-
-
84860663163
-
Evolutionary insight from whole-genome sequencing of experimentally evolved microbes
-
Dettman JR, Rodrigue N, Melnyk AH, Wong A, Bailey SF, et al. (2012) Evolutionary insight from whole-genome sequencing of experimentally evolved microbes. Mol Ecol 21: 2058-2077.
-
(2012)
Mol Ecol
, vol.21
, pp. 2058-2077
-
-
Dettman, J.R.1
Rodrigue, N.2
Melnyk, A.H.3
Wong, A.4
Bailey, S.F.5
-
3
-
-
36049009735
-
Marine actinobacteria: New opportunities for natural product search and discovery
-
DOI 10.1016/j.tim.2007.10.004, PII S0966842X07001801
-
Bull AT, Stach JE (2007) Marine actinobacteria: new opportunities for natural product search and discovery. Trends Microbiol 15: 491-499. (Pubitemid 350102189)
-
(2007)
Trends in Microbiology
, vol.15
, Issue.11
, pp. 491-499
-
-
Bull, A.T.1
Stach, J.E.M.2
-
4
-
-
84857980035
-
Comparative genomics reveals evidence of marine adaptation in Salinispora species
-
Penn K, Jensen PR (2012) Comparative genomics reveals evidence of marine adaptation in Salinispora species. BMC Genomics 13: 86.
-
(2012)
BMC Genomics
, vol.13
, pp. 86
-
-
Penn, K.1
Jensen, P.R.2
-
5
-
-
84864104983
-
Genetic complementation of the obligate marine actinobacterium Salinispora tropica with the large mechanosensitive channel gene mscL rescues cells from osmotic downshock
-
Bucarey SA, Penn K, Paul L, Fenical W, Jensen PR (2012) Genetic complementation of the obligate marine actinobacterium Salinispora tropica with the large mechanosensitive channel gene mscL rescues cells from osmotic downshock. Appl Environ Microbiol 78: 4175-4182.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 4175-4182
-
-
Bucarey, S.A.1
Penn, K.2
Paul, L.3
Fenical, W.4
Jensen, P.R.5
-
6
-
-
70349464475
-
Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
-
Penn K, Jenkins C, Nett M, Udwary DW, Gontang EA, et al. (2009) Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. ISME J 3: 1193-1203.
-
(2009)
ISME J
, vol.3
, pp. 1193-1203
-
-
Penn, K.1
Jenkins, C.2
Nett, M.3
Udwary, D.W.4
Gontang, E.A.5
-
8
-
-
50949111839
-
Effects of subinhibitory concentrations of antibiotics on SOS and DNA repair gene expression in Staphylococcus aureus
-
Mesak LR, Miao V, Davies J (2008) Effects of subinhibitory concentrations of antibiotics on SOS and DNA repair gene expression in Staphylococcus aureus. Antimicrob Agents Chemother 52: 3394-3397.
-
(2008)
Antimicrob Agents Chemother
, vol.52
, pp. 3394-3397
-
-
Mesak, L.R.1
Miao, V.2
Davies, J.3
-
9
-
-
79251638546
-
Giant linear plasmids in Streptomyces: A treasure trove of antibiotic biosynthetic clusters
-
Kinashi H (2011) Giant linear plasmids in Streptomyces: a treasure trove of antibiotic biosynthetic clusters. J Antibiot 64: 19-25.
-
(2011)
J Antibiot
, vol.64
, pp. 19-25
-
-
Kinashi, H.1
-
10
-
-
77749243242
-
Sponge-derived Streptomyces producing isoprenoids via the mevalonate pathway
-
Izumikawa M, Khan ST, Takagi M, Shin-ya K (2010) Sponge-derived Streptomyces producing isoprenoids via the mevalonate pathway. J Nat Prod 73: 208-212.
-
(2010)
J Nat Prod
, vol.73
, pp. 208-212
-
-
Izumikawa, M.1
Khan, S.T.2
Takagi, M.3
Shin-ya, K.4
-
11
-
-
77953075776
-
Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea
-
Schneemann I, Nagel K, Kajahn I, Labes A, Wiese J, et al. (2010) Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea. Appl Environ Microbiol 76: 3702-3714.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3702-3714
-
-
Schneemann, I.1
Nagel, K.2
Kajahn, I.3
Labes, A.4
Wiese, J.5
-
12
-
-
35148874558
-
Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: Isolation, diversity and biological activity
-
DOI 10.1111/j.1462-2920.2007.01387.x
-
Bredholdt H, Galatenko OA, Engelhardt K, Fjaervik E, Terekhova LP, et al. (2007) Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity. Environ Microbiol 9: 2756-2764. (Pubitemid 47547543)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.11
, pp. 2756-2764
-
-
Bredholdt, H.1
Galatenko, O.A.2
Engelhardt, K.3
Fjaervik, E.4
Terekhova, L.P.5
Zotchev, S.B.6
-
13
-
-
82955206440
-
Evolution of secondary metabolite genes in three closely related marine actinomycete species
-
Freel KC, Nam SJ, Fenical W, Jensen PR (2011) Evolution of secondary metabolite genes in three closely related marine actinomycete species. Appl Environ Microbiol 77: 7261-7270.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7261-7270
-
-
Freel, K.C.1
Nam, S.J.2
Fenical, W.3
Jensen, P.R.4
-
14
-
-
79551487445
-
Streptomyces associated with a marine sponge Haliclona sp.; biosynthetic genes for secondary metabolites and products
-
Khan ST, Komaki H, Motohashi K, Kozone I, Mukai A, et al. (2011) Streptomyces associated with a marine sponge Haliclona sp.; biosynthetic genes for secondary metabolites and products. Environ Microbiol 13: 391-403.
-
(2011)
Environ Microbiol
, vol.13
, pp. 391-403
-
-
Khan, S.T.1
Komaki, H.2
Motohashi, K.3
Kozone, I.4
Mukai, A.5
-
15
-
-
84871046866
-
Draft genome sequence of marine-derived Streptomyces sp. Strain AA0539, isolated from the Yellow Sea, China
-
Xiong ZQ, Wang Y (2012) Draft genome sequence of marine-derived Streptomyces sp. strain AA0539, isolated from the Yellow Sea, China. J Bacteriol 194: 6622-6623.
-
(2012)
J Bacteriol
, vol.194
, pp. 6622-6623
-
-
Xiong, Z.Q.1
Wang, Y.2
-
16
-
-
0001857117
-
16S/23S rRNA sequencing. Nucleic acid techniques
-
Stackebrandt E, Goodfellow M, editors, John Wiley & Sons, Chichester, UK
-
Lane DJ (1991) 16S/23S rRNA sequencing. Nucleic acid techniques. In: Bacterial Systematics, Stackebrandt E, Goodfellow M, editors, John Wiley & Sons, Chichester, UK. pp. 115-175.
-
(1991)
Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
17
-
-
48449090786
-
NCBI BLAST: A better web interface
-
Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, et al. (2008) NCBI BLAST: a better web interface. Nucleic Acids Res 36: W5-9.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Johnson, M.1
Zaretskaya, I.2
Raytselis, Y.3
Merezhuk, Y.4
McGinnis, S.5
-
18
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
DOI 10.1093/molbev/msm092
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599. (Pubitemid 47236692)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
19
-
-
84858721534
-
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
-
Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, et al. (2012) The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13: 112.
-
(2012)
BMC Genomics
, vol.13
, pp. 112
-
-
Schwientek, P.1
Szczepanowski, R.2
Rückert, C.3
Kalinowski, J.4
Klein, A.5
-
20
-
-
43349108713
-
Viewing and editing assembled sequences using Consed
-
Unit11.2
-
Gordon D (2003) Viewing and editing assembled sequences using Consed. Curr Protoc Bioinformatics 11: Unit11.2.
-
(2003)
Curr Protoc Bioinformatics
, vol.11
-
-
Gordon, D.1
-
21
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P (1998) Consed: a graphical tool for sequence finishing. Genome Res 8: 195-202. (Pubitemid 28177231)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
22
-
-
45749115738
-
Toward an online repository of standard operating procedures (SOPs) for (meta)genomic annotation
-
DOI 10.1089/omi.2008.0017
-
Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, et al. (2008) Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS 12: 137-141. (Pubitemid 351873436)
-
(2008)
OMICS A Journal of Integrative Biology
, vol.12
, Issue.2
, pp. 137-141
-
-
Angiuoli, S.V.1
Gussman, A.2
Klimke, W.3
Cochrane, G.4
Field, D.5
Garrity, G.6
Kodira, C.D.7
Kyrpides, N.8
Madupu, R.9
Markowitz, V.10
Tatusova, T.11
Thomson, N.12
White, O.13
-
23
-
-
3543051830
-
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
-
DOI 10.1101/gr.2289704
-
Darling AC, Mau B, Blattner FR, Perna NT (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14: 1394-1403. (Pubitemid 39029237)
-
(2004)
Genome Research
, vol.14
, Issue.7
, pp. 1394-1403
-
-
Darling, A.C.E.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
24
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL (1999) Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27: 4636-4641.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
25
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
DOI 10.1101/gr.1224503
-
Li L, Stoeckert CJJr, Roos DS (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189. (Pubitemid 37161775)
-
(2003)
Genome Research
, vol.13
, Issue.9
, pp. 2178-2189
-
-
Li, L.1
Stoeckert Jr., C.J.2
Roos, D.S.3
-
26
-
-
84883353135
-
antiSMASH 2.0 - A versatile platform for genome mining of secondary metabolite producers
-
Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, et al. (2013) antiSMASH 2.0 - a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res 41: W204-12.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Blin, K.1
Medema, M.H.2
Kazempour, D.3
Fischbach, M.A.4
Breitling, R.5
-
27
-
-
84893193186
-
Insights into naturally minimised Streptomyces albus J1074 genome
-
Zaburannyi N, Rabyk M, Ostash B, Fedorenko V, Luzhetskyy A. (2014) Insights into naturally minimised Streptomyces albus J1074 genome. BMC Genomics 15:97.
-
(2014)
BMC Genomics
, vol.15
, pp. 97
-
-
Zaburannyi, N.1
Rabyk, M.2
Ostash, B.3
Fedorenko, V.4
Luzhetskyy, A.5
-
28
-
-
57149100418
-
Characterization of Streptomyces spp. isolated from the sea surface microlayer in the Trondheim Fjord, Norway
-
DOI 10.3390/md6040620
-
Hakvåg S, Fjærvik E, Josefsen KD, Ian E, Ellingsen TE, et al. (2008) Characterization of Streptomyces spp. isolated from the sea surface microlayer in the Trondheim Fjord, Norway. Mar Drugs 6: 620-635. (Pubitemid 352774418)
-
(2008)
Marine Drugs
, vol.6
, Issue.4
, pp. 620-635
-
-
Hakvag, S.1
Fjaervik, E.2
Josefsen, K.D.3
Ian, E.4
Ellingsen, T.E.5
Zotchev, S.B.6
-
29
-
-
84870950237
-
Updated clusters of orthologous genes for Archaea: A complex ancestor of the Archaea and the byways of horizontal gene transfer
-
Wolf YI, Makarova KS, Yutin N, Koonin EV (2012) Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. Biol Direct 7: 46.
-
(2012)
Biol Direct
, vol.7
, pp. 46
-
-
Wolf, Y.I.1
Makarova, K.S.2
Yutin, N.3
Koonin, E.V.4
-
30
-
-
0027239791
-
+ binding to the Escherichia coli K(+)-uptake protein TrkA and sequence similarity between TrkA and domains of a family of dehydrogenases suggest a role for NAD+ in bacterial transport
-
+ binding to the Escherichia coli K(+)-uptake protein TrkA and sequence similarity between TrkA and domains of a family of dehydrogenases suggest a role for NAD+ in bacterial transport. Mol Microbiol 9: 533-543.
-
(1993)
Mol Microbiol
, vol.9
, pp. 533-543
-
-
Schlösser, A.1
Hamann, A.2
Bossemeyer, D.3
Schneiderm, E.4
Bakker, E.P.5
-
32
-
-
84897952067
-
Activation and identification of five clusters for secondary metabolites in Streptomyces albus J1074
-
Olano C, García I, González A, Rodriguez M, Rozas D, et al. (2014) Activation and identification of five clusters for secondary metabolites in Streptomyces albus J1074. Microb Biotechnol 7: 242-256.
-
(2014)
Microb Biotechnol
, vol.7
, pp. 242-256
-
-
Olano, C.1
García, I.2
González, A.3
Rodriguez, M.4
Rozas, D.5
-
33
-
-
0017285432
-
Enterocin, a new antibiotic taxonomy, isolation and characterization
-
Miyairi N, Sakai H, Konomi T, Imanaka H (1976) Enterocin, a new antibiotic taxonomy, isolation and characterization. J Antibiot 29: 227-235.
-
(1976)
J Antibiot
, vol.29
, pp. 227-235
-
-
Miyairi, N.1
Sakai, H.2
Konomi, T.3
Imanaka, H.4
-
34
-
-
0034521526
-
Cloning, sequencing and analysis of the enterocin biosynthesis gene cluster from the marine isolate 'Streptomyces maritimus': Evidence for the derailment of an aromatic polyketide synthase
-
DOI 10.1016/S1074-5521(00)00044-2, PII S1074552100000442
-
Piel J, Hertweck C, Shipley PR, Hunt DM, Newman MS, et al. (2000) Cloning, sequencing and analysis of the enterocin biosynthesis gene cluster from the marine isolate 'Streptomyces maritimus': evidence for the derailment of an aromatic polyketide synthase. Chem Biol 7: 943-955. (Pubitemid 32045049)
-
(2000)
Chemistry and Biology
, vol.7
, Issue.12
, pp. 943-955
-
-
Piel, J.1
Hertweck, C.2
Shipley, P.R.3
Hunt, D.M.4
Newman, M.S.5
Moore, B.S.6
-
35
-
-
77958475358
-
The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways
-
Medema MH, Trefzer A, Kovalchuk A, van den Berg M, Müller U, et al. (2010) The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways. Genome Biol Evol 2:212-24.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 212-224
-
-
Medema, M.H.1
Trefzer, A.2
Kovalchuk, A.3
Van Den Berg, M.4
Müller, U.5
-
36
-
-
84891598612
-
The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island
-
Cruz-Morales P, Vijgenboom E, Iruegas-Bocardo F, Girard G, Yáñez-Guerra LA, et al. (2013) The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island. Genome Biol Evol 5:1165-1175.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1165-1175
-
-
Cruz-Morales, P.1
Vijgenboom, E.2
Iruegas-Bocardo, F.3
Girard, G.4
Yáñez-Guerra, L.A.5
-
37
-
-
0024236287
-
The SalI (SalGI) restriction-modification system of Streptomyces albus G
-
DOI 10.1016/0378-1119(88)90246-6
-
Rodicio MR, Chater KF (1988) The SalI (SalGI) restriction-modification system of Streptomyces albus G. Gene 74: 39-42. (Pubitemid 19069350)
-
(1988)
Gene
, vol.74
, Issue.1
, pp. 39-42
-
-
Rodicio, M.R.1
Chater, K.F.2
-
38
-
-
0942268841
-
Functional angucycline-like antibiotic gene cluster in the terminal inverted repeats of the Streptomyces ambofaciens linear chromosome
-
Pang X, Aigle B, Girardet JM, Mangenot S, Pernodet JL, et al. (2004) Functional angucycline-like antibiotic gene cluster in the terminal inverted repeats of the Streptomyces ambofaciens linear chromosome. Antimicrob Agents Chemother 48: 575-488.
-
(2004)
Antimicrob Agents Chemother
, vol.48
, pp. 575-1488
-
-
Pang, X.1
Aigle, B.2
Girardet, J.M.3
Mangenot, S.4
Pernodet, J.L.5
-
39
-
-
33748765802
-
Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens
-
DOI 10.1128/JB.00734-06
-
Choulet F, Gallois A, Aigle B, Mangenot S, Gerbaud C, et al. (2006) Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens. J Bacteriol 188: 6599-6610. (Pubitemid 44412071)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.18
, pp. 6599-6610
-
-
Choulet, F.1
Gallois, A.2
Aigle, B.3
Mangenot, S.4
Gerbaud, C.5
Truong, C.6
Francou, F.-X.7
Borges, F.8
Fourrier, C.9
Guerineau, M.10
Decaris, B.11
Barbe, V.12
Pernodet, J.-L.13
Leblond, P.14
|