Beyond crossing fibers: Tractography exploiting sub-voxel fibre dispersion and neighbourhood structure

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 7917 LNCS, Issue , 2013, Pages 402-413

  Rowe, Matthew ^a   Zhang, Hui Gary ^a   Oxtoby, Neil ^a   Alexander, Daniel C ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CONTINUOUS DISTRIBUTION; DIFFUSION TENSOR; DIFFUSION-WEIGHTED MAGNETIC RESONANCE; DIRECTIONAL INFORMATION; FIBRE DISPERSIONS; ORIENTATION DISTRIBUTION FUNCTION; PRINCIPAL EIGEN-VECTOR; SYNTHETIC EXPERIMENTS;

ALGORITHMS; BRAIN; DATA PROCESSING; DISTRIBUTION FUNCTIONS; EXPERIMENTS; FIBERS; MAGNETIC RESONANCE; MAGNETIC RESONANCE IMAGING; MEDICAL IMAGING; MONTE CARLO METHODS;

DISPERSION (WAVES);

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; BRAIN; COMPUTER ASSISTED DIAGNOSIS; CONNECTOME; DIFFUSION TENSOR IMAGING; HISTOLOGY; HUMAN; IMAGE ENHANCEMENT; MALE; METHODOLOGY; MYELINATED NERVE; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; THREE DIMENSIONAL IMAGING; ULTRASTRUCTURE;

ALGORITHMS; BRAIN; CONNECTOME; DIFFUSION TENSOR IMAGING; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MALE; NERVE FIBERS, MYELINATED; PATTERN RECOGNITION, AUTOMATED; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 84901253788     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-38868-2_34     Document Type: Conference Paper

References (27)

1. Mori, S., Crain, B.J., Chacko, V.P., van Zijl, P.C.M.: Three dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 45, 265-269 (1999)
2. Conturo, T.E., Lori, N.F., Cull, T.S., Akbudak, E., Snyder, A.Z., Shimony, J.S., McKinstry, R.C., Burton, H., Raichle, M.E.: Tracking neuronal fiber pathways in the living human brain. Proc. Natl. Acad. Sci. U.S.A. 96, 10422-10427 (1999)
3. Basser, P.J., Pajevic, S., Pierpaoli, C., Duda, J., Aldroubi, A.: In vitro fiber tractography using DT-MRI data. Magn. Reson. Med. 44, 625-632 (2000)
4. Parker, G.J., Alexander, D.C.: Probabilistic Monte Carlo based mapping of cerebral connections utilising whole-brain crossing fibre information. In: Taylor, C.J., Noble, J.A. (eds.) IPMI 2003. LNCS, vol. 2732, pp. 684-695. Springer, Heidelberg (2003) (Pubitemid 137631084)
5. Behrens, T.E.J., Johansen-Berg, H., Woolrich, M.W., Smith, S.M., Wheeler-Kingshott, C.A.M., Boulby, P.A., Barker, G.J., Sillery, E.L., Sheehan, K., Cicarelli, O., Thompson, A.J., Brady, J.M., Matthews, P.M.: Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 50, 1077-1088 (2003)
6. Parker, G.J., Alexander, D.C.: Probabilistic anatomical connectivity derived from the microscopic persistent angular structure of cerebral tissue. Philosophical Transactions of the Royal Society B: Biological Sciences 360, 893-902 (2005)
7. Behrens, T.E.J., Johansen-Berg, H., Jbabdi, S., Rushworth, M.F.S., Woolrich, M.W.: Probabilistic diffusion tractography with multiple fibre orientations: What can we gain? NeuroImage 34, 144-155 (2007)
8. Tournier, J., Calamante, F., Connelly, A.: Robust determination of the fibre orientation distribution in diffusion mri: non-negativity constrained super-resolved spherical deconvolution. NeuroImage 35, 1459-1472 (2007)
9. Jeurissen, B., Leemans, A., Tournier, J.D., Sijbers, J.: Estimation of uncertainty in constrained spherical deconvolution fiber orientations. In: IEEE International Symposium on Biomedical Imaging: Macro to Nano, pp. 907-910 (2008)
10. Jeurissen, B., Leemans, A., Jones, D.K., Tournier, J.D., Sijbers, J.: Probabilistic fiber tracking using the residual bootstrap with constrained spherical deconvolution. Human Brain Mapping 32, 461-479 (2011)
11. Tournier, J.D., Calamante, F., Gadian, D.G., Connelly, A.: Probabilistic fibre tracking through regions containing crossing fibres. In: Proc. Intl. Soc. Mag. Reson. Med., vol. 13, p. 1343 (2005)
12. Sherbondy, A.J., Dougherty, R.F., Ananthanarayanan, R., Modha, D.S., Wandell, B.A.: Think Global, Act Local; Projectome Estimation with Bluematter. In: Yang, G.-Z., Hawkes, D., Rueckert, D., Noble, A., Taylor, C. (eds.) MICCAI 2009, Part I. LNCS, vol. 5761, pp. 861-868. Springer, Heidelberg (2009)
13. Fillard, P., Poupon, C., Mangin, J.-F.: A Novel Global Tractography Algorithm Based on an Adaptive Spin Glass Model. In: Yang, G.-Z., Hawkes, D., Rueckert, D., Noble, A., Taylor, C. (eds.) MICCAI 2009, Part I. LNCS, vol. 5761, pp. 927-934. Springer, Heidelberg (2009)
14. Kreher, B.W., Mader, I., Kiselev, V.G.: Gibbs Tracking: A Novel Approach for the Reconstruction of Neuronal Pathways. Magnetic Resonance in Medicine 60, 953-963 (2008)
15. Sherbondy, A.J., Rowe, M.C., Alexander, D.C.: MicroTrack: an algorithm for concurrent projectome and microstructure estimation. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part I. LNCS, vol. 6361, pp. 183-190. Springer, Heidelberg (2010)
16. Li, L., Rilling, J.K., Preuss, T.M., Glasser, M.F., Damen, F.W., Hu, X.: Quantitative assessment of a framework for creating anatomical brain networks via global tractography. NeuroImage 61, 1017-1030 (2012)
17. Kaden, E., Knosche, T.R., Anwander, A.: Parametric spherical deconvolution: Inferring anatomical connectivity using diffusion MR imaging. NeuroImage 37, 474-488 (2007)
18. Zhang, H., Hubbard, P.L., Parker, G.J.M., Alexander, D.C.: Axon diameter mapping in the presence of orientation dispersion with diffusion MRI. NeuroImage 56, 1301-1315 (2011)
19. Sotiropoulos, S.N., Behrens, T.E.J., Jbabdi, S.: Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI. NeuroImage 60, 1412-1425 (2012)
20. Zhang, H., Shneider, T., Wheeler-Kingshott, C., Alexander, D.C.: NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain. NeuroImage 61, 1000-1016 (2012)
21. Jespersen, S.N., Leigland, L.A., Cornea, A., Kroenke, C.D.: Determination of axonal and dendritic orientation distributions within the developing cerebral cortex by diffusion tensor imaging. IEEE Trans. Med. Imaging 31, 16-32 (2012)
22. Rowe, M., Zhang, H., Alexander, D.C.: Utilising measures of fiber dispersion in white matter tractography. In: MICCAI CDMRI Workshop (2012)
23. Savadjiev, P., Campbell, J.S.W., Descoteaux, M., Deriche, R., Pike, G.B., Siddiqi, K.: Labeling of ambiguous subvoxel fibre bundle configurations in high angular resolution diffusion MRI. NeuroImage 41, 58-68 (2008)
24. Zhang, F., Hancock, E.R., Goodlett, C., Gerig, G.: White matter tractography using sequential importance sampling. In: Proc. ISMRM Annual Meeting, vol. 10 (2002)
25. Zhang, F., Hancock, E.R., Goodlett, C., Gerig, G.: Probabilistic white matter fiber tracking using particle filtering and von Mises-Fisher sampling. Med. Image Anal. 13, 5-18 (2009)
26. Pontabry, J., Rousseau, F.: Probabilistic tractography using Q-ball modeling and particle filtering. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011, Part II. LNCS, vol. 6892, pp. 209-216. Springer, Heidelberg (2011)
27. Doucet, A., Godsill, S., Andrieu, C.: On sequential Monte Carlo sampling methods for Bayesian filtering. Stat. and Comput. 10, 197-208 (2000)