Axon diameter mapping in the presence of orientation dispersion with diffusion MRI

NeuroImage

Volumn 56, Issue 3, 2011, Pages 1301-1315

  Zhang, Hui ^a   Hubbard, Penny L ^b   Parker, Geoff J M ^b   Alexander, Daniel C ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Axon diameter; Diffusion MRI; Orientation dispersion

Indexed keywords

ADULT; ARTICLE; BRAIN MAPPING; CONTROLLED STUDY; DIFFUSION WEIGHTED IMAGING; DISPERSION; FEMALE; HISTOLOGY; HUMAN; HUMAN EXPERIMENT; IN VIVO STUDY; MALE; MATHEMATICAL MODEL; NERVE FIBER; NORMAL HUMAN; PRIORITY JOURNAL; VOLUNTEER;

ADULT; ALGORITHMS; ANISOTROPY; AXONS; BRAIN; COMPUTER SIMULATION; DIFFUSION MAGNETIC RESONANCE IMAGING; FEMALE; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MALE; MIDDLE AGED; MODELS, NEUROLOGICAL;

EID: 79955479901     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2011.01.084     Document Type: Article

References (37)

1. Aboitiz F., Scheibel A.B., Fisher R.S., Zaidel E. Fiber composition of the human corpus callosum. Brain Res. 1992, 598:143-153.
2. Abramowitz M., Stegun I.A. Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Tables 1972, Dover, New York. 9th ed.
3. Alexander D.C. A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features. Magn. Reson. Med. 2008, 60:439-448.
4. Alexander D.C., Hubbard P.L., Hall M.G., Moore E.A., Ptito M., Parker G.J.M., Dyrby T.B. Orientationally invariant indices of axon diameter and density from diffusion MRI. Neuroimage 2010, 52(4):1374-1389. (Oct).
5. Anderson A.W. Measurement of fiber orientation distributions using high angular resolution diffusion imaging. Magn. Reson. Med. 2005, 54:1194-1206.
6. Assaf Y., Freidlin R.Z., Rhode G.K., Basser P.J. New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter. Magn. Reson. Med. 2004, 52:965-978.
7. Assaf Y., Blumenfeld-Katzir T., Yovel Y., Basser P.J. AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Magn. Reson. Med. 2008, 59:1347-1354.
8. Barazany D., Basser P.J., Assaf Y. In-vivo measurement of the axon diameter distribution in the corpus callosum of a rat brain. Brain 2009, 132:1210-1220.
9. Basser P.J., Mattiello J., Bihan D.L. MR diffusion tensor spectroscopy and imaging. Biophys. J. 1994, 66:259-267.
10. Behrens T.E.J., Johansen-Berg H., Woolrich M.W., Smith S.M., Wheeler-Kingshott C.A.M., Boulby P.A., Barker G.J., Sillery E.L., Sheehan K., Cicarelli O., Thompson A.J., Brady J.M., Matthews P.M. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 2003, 50:1077-1088.
11. Bürgel U., Amunts K., Hoemke L., Mohlberg H., Gilsbach J.M., Zilles K. White matter fiber tracts of the human brain: three-dimensional mapping at microscopic resolution, topography and intersubject variability. Neuroimage 2006, 29:1092-1105.
12. Catani M., Howard R.J., Pajevic S., Jones D.K. Virtual in vivo interactive dissection of white matter fasciculi in the human brain. Neuroimage 2002, 17:77-94.
13. Cook P.A., Alexander D.C. Modelling Uncertainty in Two Fibre-Orientation Estimates Within a Voxel. Proc. ISMRM 14th Scientific Meeting 2006, 1629.
14. Cook P.A., Alexander D.C., Parker G.J.M. Modelling Noise-Induced Fibre-Orientation Error in Diffusion-Tensor MRI. IEEE International Symposium on Biomedical Imaging: Macro to Nano 2004, vol. 1:332-335. (Apr).
15. Drobnjak I., Siow B., Alexander D.C. Optimizing gradient waveforms for microstructure sensitivity in diffusion-weighted MR. J. Magn. Reson. 2010, 206(1):41-51. (Sep).
16. House E.L., Pansky B. A Functional Approach to Neuroanatomy 1960, McGraw-Hill, New York.
17. Jellison B.J., Field A.S., Medow J., Lazar M., Salamat M.S., Alexander A.L. Diffusion tensor imaging of cerebral white matter: a pictorial review of physics, fiber tract anatomy, and tumor imaging patterns. Am. J. Neuroradiol. 2004, 25:356-369. (Mar).
18. Jespersen S.N., Kroenke C.D., Ostergaard L., Ackerman J.J.H., Yablonskiy D.A. Modeling dendrite density from magnetic resonance diffusion measurements. Neuroimage 2007, 34:1473-1486.
19. Jones D.K. Determining and visualizing uncertainty in estimates of fiber orientation from diffusion tensor MRI. Magn. Reson. Med. 2003, 49:7-12.
20. Kaden E., Knösche T.R., Anwander A. Parametric spherical deconvolution: inferring anatomical connectivity using diffusion MR imaging. Neuroimage 2007, 37:474-488.
21. Kass R.E., Raftery A.E. Bayes factors. J. Am. Stat. Assoc. 1995, 90(430). (Jun).
22. Lawes I.N., Barrick T.R., Murugam V., Spierings N., Evans D.R., Song M., Clark C.A. Atlas-based segmentation of white matter tracts of the human brain using diffusion tensor tractography and comparison with classical dissection. Neuroimage 2008, 39(1). (Jan).
23. Mardia K.V., Jupp P.E. Directional Statistics. Wiley Series in Probability and Statistics 1990, John Wiley & Sons, Ltd.
24. Murday J.S., Cotts R.M. Self-diffusion coefficient of liquid lithium. J. Chem. Phys. 1968, 48:4938-4945.
25. Nilsson M., Latt J., Rosquist H., Nordh E., Rydhog A., Brockstedt S., Stahlberg F. Dynamic Displacement in Human Brain Studied Using q-Spacing Diffusion MRI at a 3T Clinical Scanner. Proc. ISMRM 15th Scientific Meeting 2007, 1531.
26. Ong H.H., Wehrli F.W. Quantifying axon diameter and intra-cellular volume fraction in excised mouse spinal cord with q-space imaging. Neuroimage 2010, 51:1360-1366.
27. Perge J.A., Koch K., Miller R., Sterling P., Balasubramanian V. How the optic nerve allocates space, energy capacity, and information. J. Neurosci. 2009, 29(24):7917-7928.
28. Pierpaoli C., Jezzard P., Basser P.J., Barnett A., Chiro G.D. Diffusion tensor MR imaging of the human brain. Radiology 1996, 201:637-648.
29. Rose M.E. Elementary Theory of Angular Momentum. Structure of Matter Series 1957, John Wiley & Sons, Inc.
30. Seunarine K.K., Alexander D.C. Multiple Fibers: Beyond the Diffusion Tensor. Diffusion MRI: From Quantitative Measurement to In-Vivo Neuroanatomy 2009, 55-72. Academic Press. H. Johansen-Berg, T.E.J. Behrens (Eds.).
31. Stanisz G.J., Szafer A., Wright G.A., Henkelman M. An analytical model of restricted diffusion in bovine optic nerve. Magn. Reson. Med. 1997, 37:103-111.
32. Stejskal E.O., Tanner J.E. Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J. Chem. Phys. 1965, 42:288-292.
33. Stepisnik J. Time-dependent self-diffusion by NMR spin-echo. Phys. B: Condens. Matter 1993, 183(4):343-350.
34. Szafer A., Zhong J.H., Gore J.C. Theoretical model for water diffusion in tissues. Magn. Reson. Med. 1995, 33(5):697-712.
35. Wakana S., Jiang H., Nagae-Poetscher L.M., van Zijl P.C., Mori S. Fiber tract-based atlas of human white matter anatomy. Radiology 2004, 230(1):77-87.
36. Westin C.-F., Maier S.E., Mamata H., Nabavi A., Jolesz F.A., Kikinis R. Processing and visualization for diffusion tensor MRI. Med. Image Anal. 2002, 6:93-108.
37. Zhang H., Alexander D.C. Axon Diameter Mapping in the Presence of Orientation Dispersion with Diffusion MRI. Vol. 6361 of Lecture Notes in Computer Science 2010, 640-647.