-
1
-
-
36348976352
-
Systems biology of antibiotic production by microorganisms
-
Rokem J.S., Lantz A.E., Nielsen J. Systems biology of antibiotic production by microorganisms. Nat Prod Rep 2007, 24:1262-1287.
-
(2007)
Nat Prod Rep
, vol.24
, pp. 1262-1287
-
-
Rokem, J.S.1
Lantz, A.E.2
Nielsen, J.3
-
2
-
-
70350448473
-
Antibiotics: natural products essential to human health
-
Demain A.L. Antibiotics: natural products essential to human health. Med Res Rev 2009, 29:821-842.
-
(2009)
Med Res Rev
, vol.29
, pp. 821-842
-
-
Demain, A.L.1
-
3
-
-
80052077061
-
The regulation of the secondary metabolism of Streptomyces: new links and experimental advances
-
van Wezel G.P., McDowall K.J. The regulation of the secondary metabolism of Streptomyces: new links and experimental advances. Nat Prod Rep 2011, 28:1311-1333.
-
(2011)
Nat Prod Rep
, vol.28
, pp. 1311-1333
-
-
van Wezel, G.P.1
McDowall, K.J.2
-
4
-
-
84874850153
-
Molecular regulation of antibiotic biosynthesis in streptomyces
-
Liu G., Chater K.F., Chandra G., Niu G., Tan H. Molecular regulation of antibiotic biosynthesis in streptomyces. Microbiol Mol Biol Rev 2013, 77:112-143.
-
(2013)
Microbiol Mol Biol Rev
, vol.77
, pp. 112-143
-
-
Liu, G.1
Chater, K.F.2
Chandra, G.3
Niu, G.4
Tan, H.5
-
5
-
-
84892876508
-
Beyond gene expression: the impact of protein post-translational modifications in bacteria
-
Cain J.A., Solis N., Cordwell S.J. Beyond gene expression: the impact of protein post-translational modifications in bacteria. J Proteomics 2014, 31:265-286.
-
(2014)
J Proteomics
, vol.31
, pp. 265-286
-
-
Cain, J.A.1
Solis, N.2
Cordwell, S.J.3
-
6
-
-
82755198873
-
Phosphoproteome analysis of Streptomyces development reveals extensive protein phosphorylation accompanying bacterial differentiation
-
Manteca A., Ye J., Sanchez J., Jensen O.N. Phosphoproteome analysis of Streptomyces development reveals extensive protein phosphorylation accompanying bacterial differentiation. J Proteome Res 2011, 10:5481-5492.
-
(2011)
J Proteome Res
, vol.10
, pp. 5481-5492
-
-
Manteca, A.1
Ye, J.2
Sanchez, J.3
Jensen, O.N.4
-
7
-
-
77954696406
-
Analysis of the phosphoproteome of the multicellular bacterium Streptomyces coelicolor A3(2) by protein/peptide fractionation, phosphopeptide enrichment and high-accuracy mass spectrometry
-
Parker J.L., Jones A.M., Serazetdinova L., Saalbach G., Bibb M.J., Naldrett M.J. Analysis of the phosphoproteome of the multicellular bacterium Streptomyces coelicolor A3(2) by protein/peptide fractionation, phosphopeptide enrichment and high-accuracy mass spectrometry. Proteomics 2010, 10:2486-2497.
-
(2010)
Proteomics
, vol.10
, pp. 2486-2497
-
-
Parker, J.L.1
Jones, A.M.2
Serazetdinova, L.3
Saalbach, G.4
Bibb, M.J.5
Naldrett, M.J.6
-
8
-
-
77955156087
-
Lysine acetylation: the tale of a modification from transcription regulation to metabolism
-
Arif M., Selvi B.R., Kundu T.K. Lysine acetylation: the tale of a modification from transcription regulation to metabolism. Chembiochem 2010, 11:1501-1504.
-
(2010)
Chembiochem
, vol.11
, pp. 1501-1504
-
-
Arif, M.1
Selvi, B.R.2
Kundu, T.K.3
-
9
-
-
77149148756
-
Regulation of cellular metabolism by protein lysine acetylation
-
Zhao S., Xu W., Jiang W., Yu W., Lin Y., Zhang T., et al. Regulation of cellular metabolism by protein lysine acetylation. Science 2010, 327:1000-1004.
-
(2010)
Science
, vol.327
, pp. 1000-1004
-
-
Zhao, S.1
Xu, W.2
Jiang, W.3
Yu, W.4
Lin, Y.5
Zhang, T.6
-
10
-
-
68949212379
-
Lysine acetylation targets protein complexes and co-regulates major cellular functions
-
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., et al. Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 2009, 325:834-840.
-
(2009)
Science
, vol.325
, pp. 834-840
-
-
Choudhary, C.1
Kumar, C.2
Gnad, F.3
Nielsen, M.L.4
Rehman, M.5
Walther, T.C.6
-
11
-
-
79953702814
-
Lysine acetylation is a widespread protein modification for diverse proteins in Arabidopsis
-
Wu X., Oh M.H., Schwarz E.M., Larue C.T., Sivaguru M., Imai B.S., et al. Lysine acetylation is a widespread protein modification for diverse proteins in Arabidopsis. Plant Physiol 2011, 155:1769-1778.
-
(2011)
Plant Physiol
, vol.155
, pp. 1769-1778
-
-
Wu, X.1
Oh, M.H.2
Schwarz, E.M.3
Larue, C.T.4
Sivaguru, M.5
Imai, B.S.6
-
12
-
-
84861689430
-
Lysine acetylation is widespread on proteins of diverse function and localization in the protozoan parasite Toxoplasma gondii
-
Jeffers V., Sullivan W.J. Lysine acetylation is widespread on proteins of diverse function and localization in the protozoan parasite Toxoplasma gondii. Eukaryot Cell 2012, 11:735-742.
-
(2012)
Eukaryot Cell
, vol.11
, pp. 735-742
-
-
Jeffers, V.1
Sullivan, W.J.2
-
13
-
-
84869215170
-
Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae
-
Henriksen P., Wagner S.A., Weinert B.T., Sharma S., Bacinskaja G., Rehman M., et al. Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae. Mol Cell Proteomics 2012, 11:1510-1522.
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 1510-1522
-
-
Henriksen, P.1
Wagner, S.A.2
Weinert, B.T.3
Sharma, S.4
Bacinskaja, G.5
Rehman, M.6
-
14
-
-
84881544331
-
Extensive lysine acetylation occurs in evolutionarily conserved metabolic pathways and parasite-specific functions during Plasmodium falciparum intraerythrocytic development
-
Miao J., Lawrence M., Jeffers V., Zhao F., Parker D., Ge Y., et al. Extensive lysine acetylation occurs in evolutionarily conserved metabolic pathways and parasite-specific functions during Plasmodium falciparum intraerythrocytic development. Mol Microbiol 2013, 89:660-675.
-
(2013)
Mol Microbiol
, vol.89
, pp. 660-675
-
-
Miao, J.1
Lawrence, M.2
Jeffers, V.3
Zhao, F.4
Parker, D.5
Ge, Y.6
-
15
-
-
79960797509
-
Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation
-
Weinert B.T., Wagner S.A., Horn H., Henriksen P., Liu W.R., Olsen J.V., et al. Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation. Sci Signal 2011, 4:ra48.
-
(2011)
Sci Signal
, vol.4
-
-
Weinert, B.T.1
Wagner, S.A.2
Horn, H.3
Henriksen, P.4
Liu, W.R.5
Olsen, J.V.6
-
16
-
-
84873343462
-
Comprehensive profiling of protein lysine acetylation in Escherichia coli
-
Zhang K., Zheng S., Yang J.S., Chen Y., Cheng Z. Comprehensive profiling of protein lysine acetylation in Escherichia coli. J Proteome Res 2013, 12:844-851.
-
(2013)
J Proteome Res
, vol.12
, pp. 844-851
-
-
Zhang, K.1
Zheng, S.2
Yang, J.S.3
Chen, Y.4
Cheng, Z.5
-
17
-
-
61649089277
-
Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli
-
Zhang J., Sprung R., Pei J., Tan X., Kim S., Zhu H., et al. Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli. Mol Cell Proteomics 2009, 8:215-225.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 215-225
-
-
Zhang, J.1
Sprung, R.2
Pei, J.3
Tan, X.4
Kim, S.5
Zhu, H.6
-
18
-
-
84878629096
-
The acetylproteome of Gram-positive model bacterium Bacillus subtilis
-
Kim D., Yu B.J., Kim J.A., Lee Y.J., Choi S.G., Kang S., et al. The acetylproteome of Gram-positive model bacterium Bacillus subtilis. Proteomics 2013, 13:1726-1736.
-
(2013)
Proteomics
, vol.13
, pp. 1726-1736
-
-
Kim, D.1
Yu, B.J.2
Kim, J.A.3
Lee, Y.J.4
Choi, S.G.5
Kang, S.6
-
19
-
-
84883772266
-
Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus
-
Okanishi H., Kim K., Masui R., Kuramitsu S. Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus. J Proteome Res 2013, 12:3952-3968.
-
(2013)
J Proteome Res
, vol.12
, pp. 3952-3968
-
-
Okanishi, H.1
Kim, K.2
Masui, R.3
Kuramitsu, S.4
-
20
-
-
84881243155
-
Proteomic analysis of acetylation in thermophilic Geobacillus kaustophilus
-
Lee D.W., Kim D., Lee Y.J., Kim J.A., Choi J.Y., Kang S., et al. Proteomic analysis of acetylation in thermophilic Geobacillus kaustophilus. Proteomics 2013, 13:2278-2282.
-
(2013)
Proteomics
, vol.13
, pp. 2278-2282
-
-
Lee, D.W.1
Kim, D.2
Lee, Y.J.3
Kim, J.A.4
Choi, J.Y.5
Kang, S.6
-
21
-
-
84872047321
-
Differential lysine acetylation profiles of Erwinia amylovora strains revealed by proteomics
-
Wu X., Vellaichamy A., Wang D., Zamdborg L., Kelleher N.L., Huber S.C., et al. Differential lysine acetylation profiles of Erwinia amylovora strains revealed by proteomics. J Proteomics 2013, 79:60-71.
-
(2013)
J Proteomics
, vol.79
, pp. 60-71
-
-
Wu, X.1
Vellaichamy, A.2
Wang, D.3
Zamdborg, L.4
Kelleher, N.L.5
Huber, S.C.6
-
22
-
-
84871407978
-
Acetoacetyl-CoA synthetase activity is controlled by a protein acetyltransferase with unique domain organization in Streptomyces lividans
-
Tucker A.C., Escalante-Semerena J.C. Acetoacetyl-CoA synthetase activity is controlled by a protein acetyltransferase with unique domain organization in Streptomyces lividans. Mol Microbiol 2013, 87:152-167.
-
(2013)
Mol Microbiol
, vol.87
, pp. 152-167
-
-
Tucker, A.C.1
Escalante-Semerena, J.C.2
-
23
-
-
33747365321
-
Daptomycin versus standard therapy for bacteremia and endocarditis caused by Staphylococcus aureus
-
Fowler V.G., Boucher H.W., Corey G.R., Abrutyn E., Karchmer A.W., Rupp M.E., et al. Daptomycin versus standard therapy for bacteremia and endocarditis caused by Staphylococcus aureus. N Engl J Med 2006, 355:653-665.
-
(2006)
N Engl J Med
, vol.355
, pp. 653-665
-
-
Fowler, V.G.1
Boucher, H.W.2
Corey, G.R.3
Abrutyn, E.4
Karchmer, A.W.5
Rupp, M.E.6
-
24
-
-
84874010045
-
Transcriptional analysis of the effect of exogenous decanoic acid stress on Streptomyces roseosporus
-
Liao G., Liu Q., Xie J. Transcriptional analysis of the effect of exogenous decanoic acid stress on Streptomyces roseosporus. Microb Cell Fact 2013, 12:19.
-
(2013)
Microb Cell Fact
, vol.12
, pp. 19
-
-
Liao, G.1
Liu, Q.2
Xie, J.3
-
25
-
-
33746992118
-
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey
-
Kim S.C., Sprung R., Chen Y., Xu Y., Ball H., Pei J., et al. Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Mol Cell 2006, 23:607-618.
-
(2006)
Mol Cell
, vol.23
, pp. 607-618
-
-
Kim, S.C.1
Sprung, R.2
Chen, Y.3
Xu, Y.4
Ball, H.5
Pei, J.6
-
26
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa M., Goto S., Kawashima S., Okuno Y., Hattori M. The KEGG resource for deciphering the genome. Nucleic Acids Res 2004, 32:D277-D280.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
27
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Hunter S., Apweiler R., Attwood T.K., Bairoch A., Bateman A., Binns D., et al. InterPro: the integrative protein signature database. Nucleic Acids Res 2009, 37:D211-D215.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
-
28
-
-
75549091794
-
CORUM: the comprehensive resource of mammalian protein complexes-2009
-
Ruepp A., Waegele B., Lechner M., Brauner B., Dunger-Kaltenbach I., Fobo G., et al. CORUM: the comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Res 2010, 38:D497-D501.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Ruepp, A.1
Waegele, B.2
Lechner, M.3
Brauner, B.4
Dunger-Kaltenbach, I.5
Fobo, G.6
-
29
-
-
68949213019
-
A generic method for assignment of reliability scores applied to solvent accessibility predictions
-
Petersen B., Petersen T.N., Andersen P., Nielsen M., Lundegaard C. A generic method for assignment of reliability scores applied to solvent accessibility predictions. BMC Struct Biol 2009, 9:51.
-
(2009)
BMC Struct Biol
, vol.9
, pp. 51
-
-
Petersen, B.1
Petersen, T.N.2
Andersen, P.3
Nielsen, M.4
Lundegaard, C.5
-
30
-
-
84857518627
-
Biological sequence motif discovery using motif-x
-
[Chapter 13:Unit 13]
-
Chou M.F., Schwartz D. Biological sequence motif discovery using motif-x. Curr Protoc Bioinformatics 2011, 5-24. [Chapter 13:Unit 13].
-
(2011)
Curr Protoc Bioinformatics
, pp. 5-24
-
-
Chou, M.F.1
Schwartz, D.2
-
31
-
-
80051937249
-
Involvement of protein acetylation in glucose-induced transcription of a stress-responsive promoter
-
Lima B.P., Antelmann H., Gronau K., Chi B.K., Becher D., Brinsmade S.R., et al. Involvement of protein acetylation in glucose-induced transcription of a stress-responsive promoter. Mol Microbiol 2011, 81:1190-1204.
-
(2011)
Mol Microbiol
, vol.81
, pp. 1190-1204
-
-
Lima, B.P.1
Antelmann, H.2
Gronau, K.3
Chi, B.K.4
Becher, D.5
Brinsmade, S.R.6
-
32
-
-
77952136477
-
Acetylation represses the binding of CheY to its target proteins
-
Liarzi O., Barak R., Bronner V., Dines M., Sagi Y., Shainskaya A., et al. Acetylation represses the binding of CheY to its target proteins. Mol Microbiol 2010, 76:932-943.
-
(2010)
Mol Microbiol
, vol.76
, pp. 932-943
-
-
Liarzi, O.1
Barak, R.2
Bronner, V.3
Dines, M.4
Sagi, Y.5
Shainskaya, A.6
-
33
-
-
79251477191
-
Nepsilon-lysine acetylation of a bacterial transcription factor inhibits Its DNA-binding activity
-
Thao S., Chen C.S., Zhu H., Escalante-Semerena J.C. Nepsilon-lysine acetylation of a bacterial transcription factor inhibits Its DNA-binding activity. PLoS One 2010, 5:e15123.
-
(2010)
PLoS One
, vol.5
-
-
Thao, S.1
Chen, C.S.2
Zhu, H.3
Escalante-Semerena, J.C.4
-
34
-
-
12644265398
-
A novel host factor for integration of mycobacteriophage L5
-
Pedulla M.L., Lee M.H., Lever D.C., Hatfull G.F. A novel host factor for integration of mycobacteriophage L5. Proc Natl Acad Sci U S A 1996, 93:15411-15416.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 15411-15416
-
-
Pedulla, M.L.1
Lee, M.H.2
Lever, D.C.3
Hatfull, G.F.4
-
35
-
-
34247604950
-
AfsR recruits RNA polymerase to the afsS promoter: a model for transcriptional activation by SARPs
-
Tanaka A., Takano Y., Ohnishi Y., Horinouchi S. AfsR recruits RNA polymerase to the afsS promoter: a model for transcriptional activation by SARPs. J Mol Biol 2007, 369:322-333.
-
(2007)
J Mol Biol
, vol.369
, pp. 322-333
-
-
Tanaka, A.1
Takano, Y.2
Ohnishi, Y.3
Horinouchi, S.4
-
36
-
-
0028171561
-
AfsR2: a previously undetected gene encoding a 63-amino-acid protein that stimulates antibiotic production in Streptomyces lividans
-
Vogtli M., Chang P.C., Cohen S.N. afsR2: a previously undetected gene encoding a 63-amino-acid protein that stimulates antibiotic production in Streptomyces lividans. Mol Microbiol 1994, 14:643-653.
-
(1994)
Mol Microbiol
, vol.14
, pp. 643-653
-
-
Vogtli, M.1
Chang, P.C.2
Cohen, S.N.3
-
37
-
-
80053595149
-
Acetylation regulates the stability of a bacterial protein: growth stage-dependent modification of RNase R
-
Liang W., Malhotra A., Deutscher M.P. Acetylation regulates the stability of a bacterial protein: growth stage-dependent modification of RNase R. Mol Cell 2011, 44:160-166.
-
(2011)
Mol Cell
, vol.44
, pp. 160-166
-
-
Liang, W.1
Malhotra, A.2
Deutscher, M.P.3
-
38
-
-
33845948267
-
Redesigning the PheA domain of gramicidin synthetase leads to a new understanding of the enzyme's mechanism and selectivity
-
Stevens B.W., Lilien R.H., Georgiev I., Donald B.R., Anderson A.C. Redesigning the PheA domain of gramicidin synthetase leads to a new understanding of the enzyme's mechanism and selectivity. Biochemistry 2006, 45:15495-15504.
-
(2006)
Biochemistry
, vol.45
, pp. 15495-15504
-
-
Stevens, B.W.1
Lilien, R.H.2
Georgiev, I.3
Donald, B.R.4
Anderson, A.C.5
-
39
-
-
0347457075
-
Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine
-
Starai V.J., Celic I., Cole R.N., Boeke J.D., Escalante-Semerena J.C. Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine. Science 2002, 298:2390-2392.
-
(2002)
Science
, vol.298
, pp. 2390-2392
-
-
Starai, V.J.1
Celic, I.2
Cole, R.N.3
Boeke, J.D.4
Escalante-Semerena, J.C.5
-
40
-
-
11444260150
-
Identification of a cluster of genes that directs desferrioxamine biosynthesis in Streptomyces coelicolor M145
-
Barona-Gomez F., Wong U., Giannakopulos A.E., Derrick P.J., Challis G.L. Identification of a cluster of genes that directs desferrioxamine biosynthesis in Streptomyces coelicolor M145. J Am Chem Soc 2004, 126:16282-16283.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 16282-16283
-
-
Barona-Gomez, F.1
Wong, U.2
Giannakopulos, A.E.3
Derrick, P.J.4
Challis, G.L.5
-
41
-
-
21044449406
-
A widely distributed bacterial pathway for siderophore biosynthesis independent of nonribosomal peptide synthetases
-
Challis G.L. A widely distributed bacterial pathway for siderophore biosynthesis independent of nonribosomal peptide synthetases. Chembiochem 2005, 6:601-611.
-
(2005)
Chembiochem
, vol.6
, pp. 601-611
-
-
Challis, G.L.1
-
42
-
-
67650743221
-
Biosynthesis of phosphonic and phosphinic acid natural products
-
Metcalf W.W., van der Donk W.A. Biosynthesis of phosphonic and phosphinic acid natural products. Annu Rev Biochem 2009, 78:65-94.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 65-94
-
-
Metcalf, W.W.1
van der Donk, W.A.2
-
43
-
-
80255122793
-
Antibacterial and antitubercular activity of fosmidomycin, FR900098, and their lipophilic analogs
-
Uh E., Jackson E.R., San Jose G., Maddox M., Lee R.E., Boshoff H.I., et al. Antibacterial and antitubercular activity of fosmidomycin, FR900098, and their lipophilic analogs. Bioorg Med Chem Lett 2011, 21:6973-6976.
-
(2011)
Bioorg Med Chem Lett
, vol.21
, pp. 6973-6976
-
-
Uh, E.1
Jackson, E.R.2
San Jose, G.3
Maddox, M.4
Lee, R.E.5
Boshoff, H.I.6
-
44
-
-
49449119076
-
Cloning, expression, and biochemical characterization of Streptomyces rubellomurinus genes required for biosynthesis of antimalarial compound FR900098
-
Eliot A.C., Griffin B.M., Thomas P.M., Johannes T.W., Kelleher N.L., Zhao H., et al. Cloning, expression, and biochemical characterization of Streptomyces rubellomurinus genes required for biosynthesis of antimalarial compound FR900098. Chem Biol 2008, 15:765-770.
-
(2008)
Chem Biol
, vol.15
, pp. 765-770
-
-
Eliot, A.C.1
Griffin, B.M.2
Thomas, P.M.3
Johannes, T.W.4
Kelleher, N.L.5
Zhao, H.6
-
45
-
-
49349107518
-
Lysine acetylation: codified crosstalk with other posttranslational modifications
-
Yang X.J., Seto E. Lysine acetylation: codified crosstalk with other posttranslational modifications. Mol Cell 2008, 31:449-461.
-
(2008)
Mol Cell
, vol.31
, pp. 449-461
-
-
Yang, X.J.1
Seto, E.2
|