-
2
-
-
37049251145
-
Nuclei from rat liver: Isolation method that combines purity with high yield
-
Blobel G., Potter V.R. Nuclei from rat liver: Isolation method that combines purity with high yield. Science 1966, 154:1662-1665.
-
(1966)
Science
, vol.154
, pp. 1662-1665
-
-
Blobel, G.1
Potter, V.R.2
-
3
-
-
84890101190
-
Integrated structural analysis of the human nuclear pore complex scaffold
-
Bui K.H., von Appen A., DiGuilio A.L., Ori A., Sparks L., Mackmull M.T., et al. Integrated structural analysis of the human nuclear pore complex scaffold. Cell 2013, 155:1233-1243.
-
(2013)
Cell
, vol.155
, pp. 1233-1243
-
-
Bui, K.H.1
von Appen, A.2
DiGuilio, A.L.3
Ori, A.4
Sparks, L.5
Mackmull, M.T.6
-
4
-
-
79953701087
-
Andromeda: A peptide search engine integrated into the MaxQuant environment
-
Cox J., Neuhauser N., Michalski A., Scheltema R.A., Olsen J.V., Mann M. Andromeda: A peptide search engine integrated into the MaxQuant environment. Journal of Proteome Research 2011, 10:1794-1805.
-
(2011)
Journal of Proteome Research
, vol.10
, pp. 1794-1805
-
-
Cox, J.1
Neuhauser, N.2
Michalski, A.3
Scheltema, R.A.4
Olsen, J.V.5
Mann, M.6
-
5
-
-
84857031394
-
A change in nuclear pore complex composition regulates cell differentiation
-
D'Angelo M.A., Gomez-Cavazos J.S., Mei A., Lackner D.H., Hetzer M.W. A change in nuclear pore complex composition regulates cell differentiation. Developmental Cell 2012, 22:446-458.
-
(2012)
Developmental Cell
, vol.22
, pp. 446-458
-
-
D'Angelo, M.A.1
Gomez-Cavazos, J.S.2
Mei, A.3
Lackner, D.H.4
Hetzer, M.W.5
-
6
-
-
80052447985
-
Improving SRM assay development: A global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra
-
de Graaf E.L., Altelaar A.F., van Breukelen B., Mohammed S., Heck A.J. Improving SRM assay development: A global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra. Journal of Proteome Research 2011, 10:4334-4341.
-
(2011)
Journal of Proteome Research
, vol.10
, pp. 4334-4341
-
-
de Graaf, E.L.1
Altelaar, A.F.2
van Breukelen, B.3
Mohammed, S.4
Heck, A.J.5
-
7
-
-
84881163721
-
Depletion of nucleoporins from HeLa nuclear pore complexes to facilitate the production of ghost pores for in vitro reconstitution
-
Diguilio A.L., Glavy J.S. Depletion of nucleoporins from HeLa nuclear pore complexes to facilitate the production of ghost pores for in vitro reconstitution. Cytotechnology 2013, 65:469-479.
-
(2013)
Cytotechnology
, vol.65
, pp. 469-479
-
-
Diguilio, A.L.1
Glavy, J.S.2
-
8
-
-
78651320816
-
Phospho.ELM: A database of phosphorylation sites-update 2011
-
Dinkel H., Chica C., Via A., Gould C.M., Jensen L.J., Gibson T.J., et al. Phospho.ELM: A database of phosphorylation sites-update 2011. Nucleic Acids Research 2011, 39:D261-D267.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Dinkel, H.1
Chica, C.2
Via, A.3
Gould, C.M.4
Jensen, L.J.5
Gibson, T.J.6
-
9
-
-
77954523086
-
Options and considerations when selecting a quantitative proteomics strategy
-
Domon B., Aebersold R. Options and considerations when selecting a quantitative proteomics strategy. Nature Biotechnology 2010, 28:710-721.
-
(2010)
Nature Biotechnology
, vol.28
, pp. 710-721
-
-
Domon, B.1
Aebersold, R.2
-
10
-
-
0017134119
-
A modified procedure for the isolation of a pore complex-lamina fraction from rat liver nuclei
-
Dwyer N., Blobel G. A modified procedure for the isolation of a pore complex-lamina fraction from rat liver nuclei. The Journal of Cell Biology 1976, 70:581-591.
-
(1976)
The Journal of Cell Biology
, vol.70
, pp. 581-591
-
-
Dwyer, N.1
Blobel, G.2
-
11
-
-
0029013639
-
The nuclear pore complex protein p62 is one of several sialic acid-containing proteins of the nuclear envelope
-
Emig S., Schmalz D., Shakibaei M., Buchner K. The nuclear pore complex protein p62 is one of several sialic acid-containing proteins of the nuclear envelope. The Journal of Biological Chemistry 1995, 270:13787-13793.
-
(1995)
The Journal of Biological Chemistry
, vol.270
, pp. 13787-13793
-
-
Emig, S.1
Schmalz, D.2
Shakibaei, M.3
Buchner, K.4
-
12
-
-
84860869167
-
Using iRT, a normalized retention time for more targeted measurement of peptides
-
Escher C., Reiter L., Maclean B., Ossola R., Herzog F., Chilton J., et al. Using iRT, a normalized retention time for more targeted measurement of peptides. Proteomics 2012, 12:1111-1121.
-
(2012)
Proteomics
, vol.12
, pp. 1111-1121
-
-
Escher, C.1
Reiter, L.2
Maclean, B.3
Ossola, R.4
Herzog, F.5
Chilton, J.6
-
14
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin A.C., Aloy P., Grandi P., Krause R., Boesche M., Marzioch M., et al. Proteome survey reveals modularity of the yeast cell machinery. Nature 2006, 440:631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
-
15
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber S.A., Rush J., Stemman O., Kirschner M.W., Gygi S.P. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proceedings of the National Academy of Sciences of the United States of America 2003, 100:6940-6945.
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
16
-
-
78651277460
-
PHOSIDA 2011: The posttranslational modification database
-
Gnad F., Gunawardena J., Mann M. PHOSIDA 2011: The posttranslational modification database. Nucleic Acids Research 2011, 39:D253-D260.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Gnad, F.1
Gunawardena, J.2
Mann, M.3
-
17
-
-
2442588924
-
OptiPrep density gradient solutions for mammalian organelles
-
Graham J.M. OptiPrep density gradient solutions for mammalian organelles. The Scientific World Journal 2002, 2:1440-1443.
-
(2002)
The Scientific World Journal
, vol.2
, pp. 1440-1443
-
-
Graham, J.M.1
-
18
-
-
84871683601
-
Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency
-
Hansson J., Rafiee M.R., Reiland S., Polo J.M., Gehring J., Okawa S., et al. Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency. Cell Reports 2012, 2:1579-1592.
-
(2012)
Cell Reports
, vol.2
, pp. 1579-1592
-
-
Hansson, J.1
Rafiee, M.R.2
Reiland, S.3
Polo, J.M.4
Gehring, J.5
Okawa, S.6
-
19
-
-
65249180173
-
An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency
-
Ho L., Ronan J.L., Wu J., Staahl B.T., Chen L., Kuo A., et al. An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency. Proceedings of the National Academy of Sciences of the United States of America 2009, 106:5181-5186.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 5181-5186
-
-
Ho, L.1
Ronan, J.L.2
Wu, J.3
Staahl, B.T.4
Chen, L.5
Kuo, A.6
-
20
-
-
33846990139
-
Nuclear localization is required for Dishevelled function in Wnt/beta-catenin signaling
-
Itoh K., Brott B.K., Bae G.U., Ratcliffe M.J., Sokol S.Y. Nuclear localization is required for Dishevelled function in Wnt/beta-catenin signaling. Journal of Biology 2005, 4:3.
-
(2005)
Journal of Biology
, vol.4
, pp. 3
-
-
Itoh, K.1
Brott, B.K.2
Bae, G.U.3
Ratcliffe, M.J.4
Sokol, S.Y.5
-
21
-
-
0015731602
-
Isolation of neuronal nuclei from rat brain cortex
-
Knüsel A., Lehner B., Kuenzle C.C., Kistler G.S. Isolation of neuronal nuclei from rat brain cortex. The Journal of Cell Biology 1973, 59:762-765.
-
(1973)
The Journal of Cell Biology
, vol.59
, pp. 762-765
-
-
Knüsel, A.1
Lehner, B.2
Kuenzle, C.C.3
Kistler, G.S.4
-
22
-
-
84874967213
-
Protein carbamylation: in vivo modification or in vitro artefact?
-
Kollipara L., Zahedi R.P. Protein carbamylation: in vivo modification or in vitro artefact?. Proteomics 2013, 13:941-944.
-
(2013)
Proteomics
, vol.13
, pp. 941-944
-
-
Kollipara, L.1
Zahedi, R.P.2
-
23
-
-
62449171942
-
Use of sequential chemical extractions to purify nuclear membrane proteins for proteomics identification
-
Korfali N., Fairley E.A., Swanson S.K., Florens L., Schirmer E.C. Use of sequential chemical extractions to purify nuclear membrane proteins for proteomics identification. Methods in Molecular Biology 2009, 528:201-225.
-
(2009)
Methods in Molecular Biology
, vol.528
, pp. 201-225
-
-
Korfali, N.1
Fairley, E.A.2
Swanson, S.K.3
Florens, L.4
Schirmer, E.C.5
-
24
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan N.J., Cagney G., Yu H., Zhong G., Guo X., Ignatchenko A., et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006, 440:637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
-
25
-
-
5744223586
-
An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: Its application to protein peptide mapping by off-line HPLC-MALDI MS
-
Krokhin O.V., Craig R., Spicer V., Ens W., Standing K.G., Beavis R.C., et al. An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: Its application to protein peptide mapping by off-line HPLC-MALDI MS. Molecular and Cellular Proteomics 2004, 3:908-919.
-
(2004)
Molecular and Cellular Proteomics
, vol.3
, pp. 908-919
-
-
Krokhin, O.V.1
Craig, R.2
Spicer, V.3
Ens, W.4
Standing, K.G.5
Beavis, R.C.6
-
26
-
-
0027437541
-
Nuclear events of apoptosis in vitro in cell-free mitotic extracts: A model system for analysis of the active phase of apoptosis
-
Lazebnik Y.A., Cole S., Cooke C.A., Nelson W.G., Earnshaw W.C. Nuclear events of apoptosis in vitro in cell-free mitotic extracts: A model system for analysis of the active phase of apoptosis. The Journal of Cell Biology 1993, 123:7-22.
-
(1993)
The Journal of Cell Biology
, vol.123
, pp. 7-22
-
-
Lazebnik, Y.A.1
Cole, S.2
Cooke, C.A.3
Nelson, W.G.4
Earnshaw, W.C.5
-
27
-
-
34447249019
-
An essential switch in subunit composition of a chromatin remodeling complex during neural development
-
Lessard J., Wu J.I., Ranish J.A., Wan M., Winslow M.M., Staahl B.T., et al. An essential switch in subunit composition of a chromatin remodeling complex during neural development. Neuron 2007, 55:201-215.
-
(2007)
Neuron
, vol.55
, pp. 201-215
-
-
Lessard, J.1
Wu, J.I.2
Ranish, J.A.3
Wan, M.4
Winslow, M.M.5
Staahl, B.T.6
-
28
-
-
77951965920
-
Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
-
MacLean B., Tomazela D.M., Shulman N., Chambers M., Finney G.L., Frewen B., et al. Skyline: An open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 2010, 26:966-968.
-
(2010)
Bioinformatics
, vol.26
, pp. 966-968
-
-
MacLean, B.1
Tomazela, D.M.2
Shulman, N.3
Chambers, M.4
Finney, G.L.5
Frewen, B.6
-
29
-
-
33748451717
-
Isolation and fractionation of rat liver nuclear envelopes and nuclear pore complexes
-
Matunis M.J. Isolation and fractionation of rat liver nuclear envelopes and nuclear pore complexes. Methods 2006, 39:277-283.
-
(2006)
Methods
, vol.39
, pp. 277-283
-
-
Matunis, M.J.1
-
30
-
-
84881228732
-
Cell type-specific nuclear pores: A case in point for context-dependent stoichiometry of molecular machines
-
Ori A., Banterle N., Iskar M., Andres-Pons A., Escher C., Khanh Bui H., et al. Cell type-specific nuclear pores: A case in point for context-dependent stoichiometry of molecular machines. Molecular Systems Biology 2013, 9:648.
-
(2013)
Molecular Systems Biology
, vol.9
, pp. 648
-
-
Ori, A.1
Banterle, N.2
Iskar, M.3
Andres-Pons, A.4
Escher, C.5
Khanh Bui, H.6
-
31
-
-
74049131716
-
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
-
Picotti P., Rinner O., Stallmach R., Dautel F., Farrah T., Domon B., et al. High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nature Methods 2009, 7:43-46.
-
(2009)
Nature Methods
, vol.7
, pp. 43-46
-
-
Picotti, P.1
Rinner, O.2
Stallmach, R.3
Dautel, F.4
Farrah, T.5
Domon, B.6
-
32
-
-
7944236264
-
Mapping the dynamic organization of the nuclear pore complex inside single living cells
-
Rabut G., Doye V., Ellenberg J. Mapping the dynamic organization of the nuclear pore complex inside single living cells. Nature Cell Biology 2004, 6:1114-1121.
-
(2004)
Nature Cell Biology
, vol.6
, pp. 1114-1121
-
-
Rabut, G.1
Doye, V.2
Ellenberg, J.3
-
34
-
-
79955595074
-
MProphet: Automated data processing and statistical validation for large-scale SRM experiments
-
Reiter L., Rinner O., Picotti P., Huttenhain R., Beck M., Brusniak M.Y., et al. mProphet: Automated data processing and statistical validation for large-scale SRM experiments. Nature Methods 2011, 8:430-435.
-
(2011)
Nature Methods
, vol.8
, pp. 430-435
-
-
Reiter, L.1
Rinner, O.2
Picotti, P.3
Huttenhain, R.4
Beck, M.5
Brusniak, M.Y.6
-
35
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed A.I., Sharov V., White J., Li J., Liang W., Bhagabati N., et al. TM4: A free, open-source system for microarray data management and analysis. Biotechniques 2003, 34:374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
-
36
-
-
84880807583
-
Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics
-
Simicevic J., Schmid A.W., Gilardoni P.A., Zoller B., Raghav S.K., Krier I., et al. Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nature Methods 2013, 10:570-576.
-
(2013)
Nature Methods
, vol.10
, pp. 570-576
-
-
Simicevic, J.1
Schmid, A.W.2
Gilardoni, P.A.3
Zoller, B.4
Raghav, S.K.5
Krier, I.6
-
38
-
-
84894412736
-
Automated selected reaction monitoring data analysis workflow for large-scale targeted proteomic studies
-
Surinova S., Huttenhain R., Chang C.Y., Espona L., Vitek O., Aebersold R. Automated selected reaction monitoring data analysis workflow for large-scale targeted proteomic studies. Nature Protocols 2013, 8:1602-1619.
-
(2013)
Nature Protocols
, vol.8
, pp. 1602-1619
-
-
Surinova, S.1
Huttenhain, R.2
Chang, C.Y.3
Espona, L.4
Vitek, O.5
Aebersold, R.6
-
39
-
-
75849153303
-
The universal protein resource (UniProt) in 2010
-
UniProt Consortium
-
UniProt Consortium The universal protein resource (UniProt) in 2010. Nucleic Acids Research 2009, 38:D142-D148.
-
(2009)
Nucleic Acids Research
, vol.38
-
-
-
40
-
-
62549124105
-
Purification of nuclei and preparation of nuclear envelopes from skeletal muscle
-
Wilkie G.S., Schirmer E.C. Purification of nuclei and preparation of nuclear envelopes from skeletal muscle. Methods in Molecular Biology 2008, 463:23-41.
-
(2008)
Methods in Molecular Biology
, vol.463
, pp. 23-41
-
-
Wilkie, G.S.1
Schirmer, E.C.2
|