-
1
-
-
0042181720
-
On corky root of tomato and the corky root fungus
-
Termohlen GP. On corky root of tomato and the corky root fungus. Tijdschr Plantenziekten 1962, 68:295-367.
-
(1962)
Tijdschr Plantenziekten
, vol.68
, pp. 295-367
-
-
Termohlen, G.P.1
-
2
-
-
84982078370
-
Nachweis eines Pyrenochaeta Stadiums bei Stammen des Korkwurzelerregers der Tomate
-
Gerlach W, Schneider R. Nachweis eines Pyrenochaeta Stadiums bei Stammen des Korkwurzelerregers der Tomate. Phytopath Z 1964, 50:262-269.
-
(1964)
Phytopath Z
, vol.50
, pp. 262-269
-
-
Gerlach, W.1
Schneider, R.2
-
3
-
-
0042961287
-
Host range and survival in soil of Pyrenochaeta lycopersici
-
Grove GG, Campbell RN. Host range and survival in soil of Pyrenochaeta lycopersici. Plant Dis 1987, 71:806-809.
-
(1987)
Plant Dis
, vol.71
, pp. 806-809
-
-
Grove, G.G.1
Campbell, R.N.2
-
4
-
-
0042460207
-
First report of Pyrenochaeta lycopersici on melon in Italy
-
Infantino A, Di Giambattista G, Porta-Puglia A. First report of Pyrenochaeta lycopersici on melon in Italy. Petria 2000, 10:195-198.
-
(2000)
Petria
, vol.10
, pp. 195-198
-
-
Infantino, A.1
Di Giambattista, G.2
Porta-Puglia, A.3
-
5
-
-
0042460208
-
Corky Root Rot
-
Minnesota: The American Phytopathological Society, Jones JB, Jones JP, Stall RE, Zitter TA
-
Pohronezny KL, Volin RB. Corky Root Rot. Compendium of Tomato Diseases 1991, 12-13. Minnesota: The American Phytopathological Society, Jones JB, Jones JP, Stall RE, Zitter TA.
-
(1991)
Compendium of Tomato Diseases
, pp. 12-13
-
-
Pohronezny, K.L.1
Volin, R.B.2
-
6
-
-
71749118995
-
Developing a molecular method for screening the resistance to a pathogen of tomato to contribute to limit the use of toxic chemicals in soil
-
Aragona M, Infantino A, Papacchini M. Developing a molecular method for screening the resistance to a pathogen of tomato to contribute to limit the use of toxic chemicals in soil. WIT Trans Ecol Envir 2009, 120:519-524.
-
(2009)
WIT Trans Ecol Envir
, vol.120
, pp. 519-524
-
-
Aragona, M.1
Infantino, A.2
Papacchini, M.3
-
7
-
-
0011706187
-
Corky root of tomato in California caused by Pyrenochaeta lycopersici and control by soil fumigation
-
Campbell RN, Hall DH, Schweers VH. Corky root of tomato in California caused by Pyrenochaeta lycopersici and control by soil fumigation. Plant Dis 1982, 66:657-661.
-
(1982)
Plant Dis
, vol.66
, pp. 657-661
-
-
Campbell, R.N.1
Hall, D.H.2
Schweers, V.H.3
-
8
-
-
46849091802
-
Cutting the Gordian knot: taking a stab at corky root rot of tomato
-
Ekengren SK. Cutting the Gordian knot: taking a stab at corky root rot of tomato. Plant Biotechnol (Tsukuba) 2008, 25:265.
-
(2008)
Plant Biotechnol (Tsukuba)
, vol.25
, pp. 265
-
-
Ekengren, S.K.1
-
9
-
-
77956634244
-
Systematic reappraisal of species in Phoma section Paraphoma
-
de Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW. Systematic reappraisal of species in Phoma section Paraphoma. Pyrenochaeta Pleurophoma Mycologia 2010, 102(5):1066-1108.
-
(2010)
Pyrenochaeta Pleurophoma Mycologia
, vol.102
, Issue.5
, pp. 1066-1108
-
-
de Gruyter, J.1
Woudenberg, J.H.C.2
Aveskamp, M.M.3
Verkley, G.J.M.4
Groenewald, J.Z.5
Crous, P.W.6
-
10
-
-
0043207352
-
Molecular and physiological characterization of Italian isolates of Pyrenochaeta lycopersici
-
10.1017/S0953756203007962, 12951797
-
Infantino A, Aragona M, Brunetti A, Lahoz E, Oliva A, Porta Puglia A. Molecular and physiological characterization of Italian isolates of Pyrenochaeta lycopersici. Mycol Res 2003, 107(6):707-716. 10.1017/S0953756203007962, 12951797.
-
(2003)
Mycol Res
, vol.107
, Issue.6
, pp. 707-716
-
-
Infantino, A.1
Aragona, M.2
Brunetti, A.3
Lahoz, E.4
Oliva, A.5
Porta Puglia, A.6
-
11
-
-
79953774300
-
Molecular, physiological and pathogenic variability of Pyrenochaeta lycopersici associated with corky rot disease of tomato plants in Turkey
-
Bayraktar H, Oksal E. Molecular, physiological and pathogenic variability of Pyrenochaeta lycopersici associated with corky rot disease of tomato plants in Turkey. Phytoparasitica 2011, 39:165-174.
-
(2011)
Phytoparasitica
, vol.39
, pp. 165-174
-
-
Bayraktar, H.1
Oksal, E.2
-
12
-
-
84855642573
-
Study of genetic structure of Italian populations of Pyrenochaeta lycopersici by AFLP analysis
-
Pucci N, Ferrante M, Infantino A. Study of genetic structure of Italian populations of Pyrenochaeta lycopersici by AFLP analysis. Acta Hortic 2011, 914:121-124.
-
(2011)
Acta Hortic
, vol.914
, pp. 121-124
-
-
Pucci, N.1
Ferrante, M.2
Infantino, A.3
-
13
-
-
84982374493
-
Formation and ultrastructure of microsclerotia of Pyrenochaeta lycopersici
-
White JG, Scott AC. Formation and ultrastructure of microsclerotia of Pyrenochaeta lycopersici. Ann Appl Biol 1973, 73:163-166.
-
(1973)
Ann Appl Biol
, vol.73
, pp. 163-166
-
-
White, J.G.1
Scott, A.C.2
-
14
-
-
58249084097
-
Morphogenesis and structure of microsclerotia of Pyrenochaeta lycopersici
-
Ball SFL. Morphogenesis and structure of microsclerotia of Pyrenochaeta lycopersici. T Brit Mycol Soc 1979, 73:366-368.
-
(1979)
T Brit Mycol Soc
, vol.73
, pp. 366-368
-
-
Ball, S.F.L.1
-
15
-
-
1842298649
-
The activity of cell wall degrading enzymes in tomato roots infected with Pyrenochaeta lycopersici and the effect of sugar concentrations in these roots on disease development
-
Goodenough PW, Kempton RJ. The activity of cell wall degrading enzymes in tomato roots infected with Pyrenochaeta lycopersici and the effect of sugar concentrations in these roots on disease development. Physiol Plant Pathol 1976, 9:313-320.
-
(1976)
Physiol Plant Pathol
, vol.9
, pp. 313-320
-
-
Goodenough, P.W.1
Kempton, R.J.2
-
16
-
-
49549128662
-
Studies on the root rotting fungus Pyrenochaeta lycopersici: extracellular enzyme secretion by the fungus grown on cell wall material from susceptible and tolerant tomato plants
-
Goodenough PW, Kempton RJ, Maw GA. Studies on the root rotting fungus Pyrenochaeta lycopersici: extracellular enzyme secretion by the fungus grown on cell wall material from susceptible and tolerant tomato plants. Physiol Plant Pathol 1976, 8:243-251.
-
(1976)
Physiol Plant Pathol
, vol.8
, pp. 243-251
-
-
Goodenough, P.W.1
Kempton, R.J.2
Maw, G.A.3
-
17
-
-
79960912043
-
Molecular and functional characterization of an endoglucanase in the phytopathogenic fungus Pyrenochaeta lycopersici
-
10.1007/s00294-011-0343-5, 21544619
-
Valente MT, Infantino A, Aragona M. Molecular and functional characterization of an endoglucanase in the phytopathogenic fungus Pyrenochaeta lycopersici. Curr Genet 2011, 57:241-251. 10.1007/s00294-011-0343-5, 21544619.
-
(2011)
Curr Genet
, vol.57
, pp. 241-251
-
-
Valente, M.T.1
Infantino, A.2
Aragona, M.3
-
18
-
-
0041458269
-
Pyrenochaeta
-
St Paul, Minnesota: APS press, Singleton L, Mihail JD, Ryush CM
-
Shishkoff N. Pyrenochaeta. Methods for Research in Soilborne Phytopathogenic Fungi 1992, 153-156. St Paul, Minnesota: APS press, Singleton L, Mihail JD, Ryush CM.
-
(1992)
Methods for Research in Soilborne Phytopathogenic Fungi
, pp. 153-156
-
-
Shishkoff, N.1
-
19
-
-
61449264862
-
Expression profiling of tomato response to Pyrenochaeta lycopersici infection
-
Aragona M, Infantino A. Expression profiling of tomato response to Pyrenochaeta lycopersici infection. Acta Hortic 2008, 789:257-262.
-
(2008)
Acta Hortic
, vol.789
, pp. 257-262
-
-
Aragona, M.1
Infantino, A.2
-
20
-
-
84865305545
-
Identification of tomato genes differentially expressed during compatible interaction with Pyrenochaeta lycopersici
-
Milc J, Infantino A, Pecchioni N, Aragona M. Identification of tomato genes differentially expressed during compatible interaction with Pyrenochaeta lycopersici. J Plant Pathol 2012, 94(2):283-296.
-
(2012)
J Plant Pathol
, vol.94
, Issue.2
, pp. 283-296
-
-
Milc, J.1
Infantino, A.2
Pecchioni, N.3
Aragona, M.4
-
21
-
-
84865443612
-
The corky root rot pathogen Pyrenochaeta lycopersici secretes a proteinaceous inducer of cell death affecting host plants differentially
-
10.1094/PHYTO-01-12-0004, 22708726
-
Clergeot P-H, Schuler H, Mørtz E, Brus M, Vintila S, Ekengren S. The corky root rot pathogen Pyrenochaeta lycopersici secretes a proteinaceous inducer of cell death affecting host plants differentially. Phytopathology 2012, 102(9):878-891. 10.1094/PHYTO-01-12-0004, 22708726.
-
(2012)
Phytopathology
, vol.102
, Issue.9
, pp. 878-891
-
-
Clergeot, P.-H.1
Schuler, H.2
Mørtz, E.3
Brus, M.4
Vintila, S.5
Ekengren, S.6
-
22
-
-
77952886150
-
Assembly algorithms for next-generation sequencing data
-
10.1016/j.ygeno.2010.03.001, 2874646, 20211242
-
Miller JR, Koren S, Sutton G. Assembly algorithms for next-generation sequencing data. Genomics 2010, 95:315-327. 10.1016/j.ygeno.2010.03.001, 2874646, 20211242.
-
(2010)
Genomics
, vol.95
, pp. 315-327
-
-
Miller, J.R.1
Koren, S.2
Sutton, G.3
-
23
-
-
84856511197
-
CAPRG: sequence assembling pipeline for next generation sequencing of non-model organisms
-
10.1371/journal.pone.0030370, 3272009, 22319566
-
Rawat A, Elasri MO, Gust KA, George G, Pham D, Scanlan LD, Vulpe C, Perkins EJ. CAPRG: sequence assembling pipeline for next generation sequencing of non-model organisms. PLoS One 2012, 7(2):e30370. 10.1371/journal.pone.0030370, 3272009, 22319566.
-
(2012)
PLoS One
, vol.7
, Issue.2
-
-
Rawat, A.1
Elasri, M.O.2
Gust, K.A.3
George, G.4
Pham, D.5
Scanlan, L.D.6
Vulpe, C.7
Perkins, E.J.8
-
24
-
-
58549121169
-
Assessing the gene space in draft genomes
-
10.1093/nar/gkn916, 2615622, 19042974
-
Parra G, Bradnam K, Ning Z, Keane T, Korf I. Assessing the gene space in draft genomes. Nucleic Acids Res 2009, 37:289-297. 10.1093/nar/gkn916, 2615622, 19042974.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 289-297
-
-
Parra, G.1
Bradnam, K.2
Ning, Z.3
Keane, T.4
Korf, I.5
-
25
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
10.1101/gr.081612.108, 2593577, 18757608
-
Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res 2008, 18:1979-1990. 10.1101/gr.081612.108, 2593577, 18757608.
-
(2008)
Genome Res
, vol.18
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
26
-
-
80051941094
-
Identification of novel transcripts in annotated genomes using RNA-Seq
-
10.1093/bioinformatics/btr355, 21697122
-
Roberts A, Pimentel H, Trapnell C, Pachter L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics 2011, 27:2325-2329. 10.1093/bioinformatics/btr355, 21697122.
-
(2011)
Bioinformatics
, vol.27
, pp. 2325-2329
-
-
Roberts, A.1
Pimentel, H.2
Trapnell, C.3
Pachter, L.4
-
27
-
-
77449140452
-
Identifying and quantifying orphan protein sequences in fungi
-
10.1016/j.jmb.2009.11.053, 19944701
-
Ekman D, Elofsson A. Identifying and quantifying orphan protein sequences in fungi. J Mol Biol 2010, 396:396-405. 10.1016/j.jmb.2009.11.053, 19944701.
-
(2010)
J Mol Biol
, vol.396
, pp. 396-405
-
-
Ekman, D.1
Elofsson, A.2
-
28
-
-
77952337288
-
De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis
-
10.1371/journal.pgen.1000891, 2851567, 20386741
-
Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo H-C, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, Zickler D, Kück U, Freitag M. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genet 2010, 6:e1000891. 10.1371/journal.pgen.1000891, 2851567, 20386741.
-
(2010)
PLoS Genet
, vol.6
-
-
Nowrousian, M.1
Stajich, J.E.2
Chu, M.3
Engh, I.4
Espagne, E.5
Halliday, K.6
Kamerewerd, J.7
Kempken, F.8
Knab, B.9
Kuo, H.-C.10
Osiewacz, H.D.11
Pöggeler, S.12
Read, N.D.13
Seiler, S.14
Smith, K.M.15
Zickler, D.16
Kück, U.17
Freitag, M.18
-
29
-
-
84866276946
-
Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina
-
10.1186/1471-2164-13-493, 3477038, 22992219
-
Islam MS, Haque MS, Islam MM, Emdad EM, Halim A, Hossen QMM, Hossain MZ, Ahmed B, Rahim S, Rahman MS, Alam MM, Hou S, Wan X, Saito JA, Alam M. Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina. BMC Genomics 2012, 13:493. 10.1186/1471-2164-13-493, 3477038, 22992219.
-
(2012)
BMC Genomics
, vol.13
, pp. 493
-
-
Islam, M.S.1
Haque, M.S.2
Islam, M.M.3
Emdad, E.M.4
Halim, A.5
Hossen, Q.M.M.6
Hossain, M.Z.7
Ahmed, B.8
Rahim, S.9
Rahman, M.S.10
Alam, M.M.11
Hou, S.12
Wan, X.13
Saito, J.A.14
Alam, M.15
-
30
-
-
84859506059
-
Genomic clustering and homology between HET-S and the NWD2 STAND protein in various fungal genomes
-
10.1371/journal.pone.0034854, 3321046, 22493719
-
Daskalov A, Paoletti M, Ness F, Saupe SJ. Genomic clustering and homology between HET-S and the NWD2 STAND protein in various fungal genomes. PLoS One 2012, 7(4):e34854. 10.1371/journal.pone.0034854, 3321046, 22493719.
-
(2012)
PLoS One
, vol.7
, Issue.4
-
-
Daskalov, A.1
Paoletti, M.2
Ness, F.3
Saupe, S.J.4
-
31
-
-
84875420788
-
Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat-induced point mutations
-
20210.1038
-
Rouxel T, Grandaubert J, Hane JK, Hoede C, Van De Wouw P, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Dilmaghani A, Duret L, Fudal I, Goodwin SB, Gout L, Glaser N, Linglin J, Kema GHJ, Lapalu N, Lawrence CB, May K, Meyer M, Ollivier B, Schoch CL, Simon A, Spatafora JW, Turgeon BG, Tyler BM, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat-induced point mutations. Nat Commun 2011, 2:20210.1038.
-
(2011)
Nat Commun
, vol.2
-
-
Rouxel, T.1
Grandaubert, J.2
Hane, J.K.3
Hoede, C.4
Van De Wouw, P.5
Couloux, A.6
Dominguez, V.7
Anthouard, V.8
Bally, P.9
Bourras, S.10
Cozijnsen, A.J.11
Ciuffetti, L.M.12
Dilmaghani, A.13
Duret, L.14
Fudal, I.15
Goodwin, S.B.16
Gout, L.17
Glaser, N.18
Linglin, J.19
Kema, G.H.J.20
Lapalu, N.21
Lawrence, C.B.22
May, K.23
Meyer, M.24
Ollivier, B.25
Schoch, C.L.26
Simon, A.27
Spatafora, J.W.28
Turgeon, B.G.29
Tyler, B.M.30
more..
-
32
-
-
78149233217
-
A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
-
R10910.1186
-
Ellwood SR, Liu Z, Syme RA, Lai Z, Hane JK, Keiper F, Moffat CS, Oliver RP, Friesen TL. A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres. Genome Biol 2010, 11:R10910.1186.
-
(2010)
Genome Biol
, vol.11
-
-
Ellwood, S.R.1
Liu, Z.2
Syme, R.A.3
Lai, Z.4
Hane, J.K.5
Keiper, F.6
Moffat, C.S.7
Oliver, R.P.8
Friesen, T.L.9
-
33
-
-
84863539444
-
Genomic and comparative analysis of the class Dothideomycetes
-
Berlin: Springer-Verlag, Poggeler S, Wostemeyer J
-
Hane JK, Williams A, Oliver RP. Genomic and comparative analysis of the class Dothideomycetes. The Mycota 2011, 14:205-226. Berlin: Springer-Verlag, Poggeler S, Wostemeyer J.
-
(2011)
The Mycota
, vol.14
, pp. 205-226
-
-
Hane, J.K.1
Williams, A.2
Oliver, R.P.3
-
34
-
-
84900846089
-
Pyrenophora tritici-repentis database
-
Pyrenophora tritici-repentis database. http://www.broadinstitute.org/.
-
-
-
-
35
-
-
78649520764
-
Evolution and diversity of a fungal self/nonself recognition locus
-
10.1371/journal.pone.0014055, 2988816, 21124910
-
Hall C, Welch J, Kowbel DJ, Glass NL. Evolution and diversity of a fungal self/nonself recognition locus. PLoS One 2010, 5:e14055. 10.1371/journal.pone.0014055, 2988816, 21124910.
-
(2010)
PLoS One
, vol.5
-
-
Hall, C.1
Welch, J.2
Kowbel, D.J.3
Glass, N.L.4
-
36
-
-
70249108411
-
Heterokaryons and parasexual recombinants of Cryphonectria parasitica in two clonal populations in southeastern Europe
-
10.1016/j.fgb.2009.07.007, 19643198
-
Milgroom MG, Sotirovski K, Risteski M, Brewer MT. Heterokaryons and parasexual recombinants of Cryphonectria parasitica in two clonal populations in southeastern Europe. Fungal Genet Biol 2009, 46:849-854. 10.1016/j.fgb.2009.07.007, 19643198.
-
(2009)
Fungal Genet Biol
, vol.46
, pp. 849-854
-
-
Milgroom, M.G.1
Sotirovski, K.2
Risteski, M.3
Brewer, M.T.4
-
37
-
-
78649417132
-
The prion hypothesis: from biological anomaly to basic regulatory mechanism
-
10.1038/nrm3007, 3003427, 21081963
-
Tuite MF, Serio TR. The prion hypothesis: from biological anomaly to basic regulatory mechanism. Nat Rev Mol Cell Biol 2010, 11:823-833. 10.1038/nrm3007, 3003427, 21081963.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 823-833
-
-
Tuite, M.F.1
Serio, T.R.2
-
38
-
-
0030451577
-
Fungal infection of plants
-
Knogge W. Fungal infection of plants. Cell 1996, 8:1711-1722.
-
(1996)
Cell
, vol.8
, pp. 1711-1722
-
-
Knogge, W.1
-
39
-
-
77950948151
-
Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family
-
10.1021/bi100009p, 20230050
-
Harris PV, Welner D, McFarland KC, Re E, Navarro Poulsen JC, Brown K, Salbo R, Ding H, Vlasenko E, Merino S, Xu F, Cherry J, Larsen S, Lo Leggio L. Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family. Biochemistry 2010, 49:3305-3316. 10.1021/bi100009p, 20230050.
-
(2010)
Biochemistry
, vol.49
, pp. 3305-3316
-
-
Harris, P.V.1
Welner, D.2
McFarland, K.C.3
Re, E.4
Navarro Poulsen, J.C.5
Brown, K.6
Salbo, R.7
Ding, H.8
Vlasenko, E.9
Merino, S.10
Xu, F.11
Cherry, J.12
Larsen, S.13
Lo Leggio, L.14
-
40
-
-
84055221845
-
Synergistic interaction in cellulose hydrolysis
-
Kostylev M, Wilson D. Synergistic interaction in cellulose hydrolysis. Biofuels 2012, 3(1):61-70.
-
(2012)
Biofuels
, vol.3
, Issue.1
, pp. 61-70
-
-
Kostylev, M.1
Wilson, D.2
-
41
-
-
84868159385
-
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen dothideomycetes fungi
-
10.1371/journal.ppat.1003037, 3516569, 23236275
-
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen dothideomycetes fungi. PLoS Pathog 2012, 8(12):e1003037. 10.1371/journal.ppat.1003037, 3516569, 23236275.
-
(2012)
PLoS Pathog
, vol.8
, Issue.12
-
-
Ohm, R.A.1
Feau, N.2
Henrissat, B.3
Schoch, C.L.4
Horwitz, B.A.5
Barry, K.W.6
Condon, B.J.7
Copeland, A.C.8
Dhillon, B.9
Glaser, F.10
Hesse, C.N.11
Kosti, I.12
LaButti, K.13
Lindquist, E.A.14
Lucas, S.15
Salamov, A.A.16
Bradshaw, R.E.17
Ciuffetti, L.18
Hamelin, R.C.19
Kema, G.H.20
Lawrence, C.21
Scott, J.A.22
Spatafora, J.W.23
Turgeon, B.G.24
de Wit, P.J.25
Zhong, S.26
Goodwin, S.B.27
Grigoriev, I.V.28
more..
-
42
-
-
80053088478
-
Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components
-
Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JCN, Johansen KS, Krogh KBRM, Jorgensen CI, Tovborg M, Anthonsen A, Tryfona T, Walter CP, Dupree P, Xu F, Davies GJ, Walton PH. Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. P Natl Acad Sci USA 2011, 108(37):15079-15084.
-
(2011)
P Natl Acad Sci USA
, vol.108
, Issue.37
, pp. 15079-15084
-
-
Quinlan, R.J.1
Sweeney, M.D.2
Lo Leggio, L.3
Otten, H.4
Poulsen, J.C.N.5
Johansen, K.S.6
Krogh, K.B.R.M.7
Jorgensen, C.I.8
Tovborg, M.9
Anthonsen, A.10
Tryfona, T.11
Walter, C.P.12
Dupree, P.13
Xu, F.14
Davies, G.J.15
Walton, P.H.16
-
43
-
-
84055197660
-
Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa
-
10.1021/cb200351y, 22004347
-
Phillips CM, Beeson WT, Cate JH, Marletta MA. Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa. ACS Chem Biol 2011, 6:1399-1406. 10.1021/cb200351y, 22004347.
-
(2011)
ACS Chem Biol
, vol.6
, pp. 1399-1406
-
-
Phillips, C.M.1
Beeson, W.T.2
Cate, J.H.3
Marletta, M.A.4
-
44
-
-
84895335287
-
Endoglucanase expression and virulence in plant fungal pathogens
-
New York: Nova Publishers, Mora-Montes HM
-
Aragona M, Valente MT. Endoglucanase expression and virulence in plant fungal pathogens. The Fungal Cell Wall 2013, 253-274. New York: Nova Publishers, Mora-Montes HM.
-
(2013)
The Fungal Cell Wall
, pp. 253-274
-
-
Aragona, M.1
Valente, M.T.2
-
45
-
-
0031040014
-
Improved biocontrol activity of Trichoderma harzianum strains by overexpression of the proteinase encoding gene prb1
-
10.1007/s002940050173, 9000378
-
Flores A, Chet I, Herrera-Estrella A. Improved biocontrol activity of Trichoderma harzianum strains by overexpression of the proteinase encoding gene prb1. Curr Genet 1997, 31:30-37. 10.1007/s002940050173, 9000378.
-
(1997)
Curr Genet
, vol.31
, pp. 30-37
-
-
Flores, A.1
Chet, I.2
Herrera-Estrella, A.3
-
46
-
-
0842283307
-
Functional analysis of tvsp1, a serine protease-encoding gene in the biocontrol agent Trichoderma virens
-
10.1016/j.fgb.2003.11.002, 14761794
-
Pozo MJ, Baek JM, Garcia JM, Kenerley CM. Functional analysis of tvsp1, a serine protease-encoding gene in the biocontrol agent Trichoderma virens. Fungal Genet Biol 2004, 41:336-348. 10.1016/j.fgb.2003.11.002, 14761794.
-
(2004)
Fungal Genet Biol
, vol.41
, pp. 336-348
-
-
Pozo, M.J.1
Baek, J.M.2
Garcia, J.M.3
Kenerley, C.M.4
-
47
-
-
3843056832
-
Isolation and characterization of PRA1, a trypsin-like protease from the biocontrol agent Trichoderma harzianum CECT 2413 displaying nematicidal activity
-
Suárez B, Rey M, Castillo P, Monte E, Llobell A. Isolation and characterization of PRA1, a trypsin-like protease from the biocontrol agent Trichoderma harzianum CECT 2413 displaying nematicidal activity. Appl Microbiol Biotech 2004, 65:46-55.
-
(2004)
Appl Microbiol Biotech
, vol.65
, pp. 46-55
-
-
Suárez, B.1
Rey, M.2
Castillo, P.3
Monte, E.4
Llobell, A.5
-
48
-
-
4444311382
-
Isolation of two aspartyl proteases from Trichoderma asperellum expressed during colonization of cucumber roots
-
Viterbo A, Harel M, Chet I. Isolation of two aspartyl proteases from Trichoderma asperellum expressed during colonization of cucumber roots. FEMS Microbiol Lett 2004, 238:151-158.
-
(2004)
FEMS Microbiol Lett
, vol.238
, pp. 151-158
-
-
Viterbo, A.1
Harel, M.2
Chet, I.3
-
49
-
-
0034000036
-
Characterization of SNP1, a cell wall-degrading trypsin, produced during infection by Stagonospora nodorum
-
Carlile AJ, Bindschedler LV, Bailey AM, Bowyer P, Clarkson JM, Cooper RM. Characterization of SNP1, a cell wall-degrading trypsin, produced during infection by Stagonospora nodorum. Mol Plant-Microbe In 2000, 13:538-550.
-
(2000)
Mol Plant-Microbe In
, vol.13
, pp. 538-550
-
-
Carlile, A.J.1
Bindschedler, L.V.2
Bailey, A.M.3
Bowyer, P.4
Clarkson, J.M.5
Cooper, R.M.6
-
50
-
-
1842482426
-
Analysis of a secreted aspartic peptidase disruption mutant of glomerella cingulata
-
Plummer KM, Clark SJ, Ellis LM, Loganathan A, Al-Samarrai TH, Rikkerink EHA, Sullivan PA, Templeton MD, Farley PC. Analysis of a secreted aspartic peptidase disruption mutant of glomerella cingulata. Eur J Plant Pathol 2004, 110:265-274.
-
(2004)
Eur J Plant Pathol
, vol.110
, pp. 265-274
-
-
Plummer, K.M.1
Clark, S.J.2
Ellis, L.M.3
Loganathan, A.4
Al-Samarrai, T.H.5
Rikkerink, E.H.A.6
Sullivan, P.A.7
Templeton, M.D.8
Farley, P.C.9
-
51
-
-
0036187469
-
CPR1: a gene encoding a putative signal peptidase that functions in pathogenicity of colletotrichum graminicola to maize
-
Thon MR, Nuckles EM, Takach JE, Vaillancourt LJ. CPR1: a gene encoding a putative signal peptidase that functions in pathogenicity of colletotrichum graminicola to maize. Mol Plant-Microbe In 2002, 15:120-128.
-
(2002)
Mol Plant-Microbe In
, vol.15
, pp. 120-128
-
-
Thon, M.R.1
Nuckles, E.M.2
Takach, J.E.3
Vaillancourt, L.J.4
-
52
-
-
79959834134
-
Finished genome of the fungal wheat pathogen mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis
-
10.1371/journal.pgen.1002070, 3111534, 21695235
-
Goodwin SB, M'barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK, Foster AJ, Van der Lee TA, Grimwood J, Aerts A, Antoniw J, Bailey A, Bluhm B, Bowler J, Bristow J, van der Burgt A, Canto-Canché B, Churchill AC, Conde-Ferràez L, Cools HJ, Coutinho PM, Csukai M, Dehal P, De Wit P, Donzelli B, van de Geest HC, Van Ham RC, Hammond-Kosack KE, Henrissat B. Finished genome of the fungal wheat pathogen mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PLoS Genet 2011, 7(6):e1002070. 10.1371/journal.pgen.1002070, 3111534, 21695235.
-
(2011)
PLoS Genet
, vol.7
, Issue.6
-
-
Goodwin, S.B.1
M'barek, S.B.2
Dhillon, B.3
Wittenberg, A.H.4
Crane, C.F.5
Hane, J.K.6
Foster, A.J.7
Van der Lee, T.A.8
Grimwood, J.9
Aerts, A.10
Antoniw, J.11
Bailey, A.12
Bluhm, B.13
Bowler, J.14
Bristow, J.15
van der Burgt, A.16
Canto-Canché, B.17
Churchill, A.C.18
Conde-Ferràez, L.19
Cools, H.J.20
Coutinho, P.M.21
Csukai, M.22
Dehal, P.23
De Wit, P.24
Donzelli, B.25
van de Geest, H.C.26
Van Ham, R.C.27
Hammond-Kosack, K.E.28
Henrissat, B.29
more..
-
53
-
-
79959340303
-
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
-
Duplessisa S, Cuomob CA, Linc Y-C, Aertsd A, Tisseranta E, Veneault-Fourreya C, Jolye DL, Hacquarda S, Amselemf J, Cantarelg BL, Chiuh R, Coutinhog PM, Feaue N, Fieldh M, Freya P, Gelhayea E, Goldbergb J, Grabherrb MG, Kodirab CD, Kohlera A, Küesi U, Lindquistd EA, Lucasd SM, Magoj R, Maucelib E, Morina E, Murata C, Pangilinand JL, Parkk R, Pearsonb M, et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. P Natl Acad Sci USA 2011, 108(229):1669171.
-
(2011)
P Natl Acad Sci USA
, vol.108
, Issue.229
, pp. 1669171
-
-
Duplessisa, S.1
Cuomob, C.A.2
Linc, Y.-C.3
Aertsd, A.4
Tisseranta, E.5
Veneault-Fourreya, C.6
Jolye, D.L.7
Hacquarda, S.8
Amselemf, J.9
Cantarelg, B.L.10
Chiuh, R.11
Coutinhog, P.M.12
Feaue, N.13
Fieldh, M.14
Freya, P.15
Gelhayea, E.16
Goldbergb, J.17
Grabherrb, M.G.18
Kodirab, C.D.19
Kohlera, A.20
Küesi, U.21
Lindquistd, E.A.22
Lucasd, S.M.23
Magoj, R.24
Maucelib, E.25
Morina, E.26
Murata, C.27
Pangilinand, J.L.28
Parkk, R.29
Pearsonb, M.30
more..
-
54
-
-
67651065004
-
Efflux in fungi: la piece de resistance
-
10.1371/journal.ppat.1000486, 2695561, 19557154
-
Coleman JJ, Mylonakis E. Efflux in fungi: la piece de resistance. PLoS Pathog 2009, 5:e1000486. 10.1371/journal.ppat.1000486, 2695561, 19557154.
-
(2009)
PLoS Pathog
, vol.5
-
-
Coleman, J.J.1
Mylonakis, E.2
-
55
-
-
73749084037
-
Regulation of multidrug resistance in pathogenic fungi
-
10.1016/j.fgb.2009.08.002, 19665571
-
Morschhauser J. Regulation of multidrug resistance in pathogenic fungi. Fungal Genet Biol 2010, 47:94-106. 10.1016/j.fgb.2009.08.002, 19665571.
-
(2010)
Fungal Genet Biol
, vol.47
, pp. 94-106
-
-
Morschhauser, J.1
-
56
-
-
33846040629
-
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels
-
10.1093/nar/gkl925, 1747178, 17135193
-
Ren Q, Chen K, Paulsen IT. TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels. Nucleic Acids Res 2007, 35:D274-D279. 10.1093/nar/gkl925, 1747178, 17135193.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ren, Q.1
Chen, K.2
Paulsen, I.T.3
-
57
-
-
30544434099
-
Fungal secondary metabolism - from biochemistry to genomics
-
10.1038/nrmicro1286, 16322742
-
Keller NP, Turner G, Bennett JW. Fungal secondary metabolism - from biochemistry to genomics. Nat Rev Microbiol 2005, 3:937-947. 10.1038/nrmicro1286, 16322742.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 937-947
-
-
Keller, N.P.1
Turner, G.2
Bennett, J.W.3
-
58
-
-
45249120842
-
Host-specific toxins: effectors of necrotrophic pathogenicity
-
10.1111/j.1462-5822.2008.01153.x, 18384660
-
Friesen TL, Faris JD, Solomon PS, Oliver RP. Host-specific toxins: effectors of necrotrophic pathogenicity. Cell Microbiol 2008, 10:1421-1428. 10.1111/j.1462-5822.2008.01153.x, 18384660.
-
(2008)
Cell Microbiol
, vol.10
, pp. 1421-1428
-
-
Friesen, T.L.1
Faris, J.D.2
Solomon, P.S.3
Oliver, R.P.4
-
59
-
-
33746208944
-
HC-toxin
-
Walton JD. HC-toxin. Phytochem 2006, 67:1406-1413.
-
(2006)
Phytochem
, vol.67
, pp. 1406-1413
-
-
Walton, J.D.1
-
60
-
-
0033081463
-
An ATP-driven efflux pump is a novel pathogenicity factor in rice blast disease
-
10.1093/emboj/18.3.512, 1171144, 9927411
-
Urban M, Bhargava T, Hamer JE. An ATP-driven efflux pump is a novel pathogenicity factor in rice blast disease. EMBO J 1999, 18:512-521. 10.1093/emboj/18.3.512, 1171144, 9927411.
-
(1999)
EMBO J
, vol.18
, pp. 512-521
-
-
Urban, M.1
Bhargava, T.2
Hamer, J.E.3
-
61
-
-
33644973701
-
Impact of fungal drug transporters on fungicide sensitivity, multidrug resistance and virulence
-
10.1002/ps.1150, 16475240
-
de Waard MA, Andrade AC, Hayashi K, Schoonbeek HJ, Stergiopoulos I, Zwiers LH. Impact of fungal drug transporters on fungicide sensitivity, multidrug resistance and virulence. Pest Manag Sci 2006, 62:195-207. 10.1002/ps.1150, 16475240.
-
(2006)
Pest Manag Sci
, vol.62
, pp. 195-207
-
-
de Waard, M.A.1
Andrade, A.C.2
Hayashi, K.3
Schoonbeek, H.J.4
Stergiopoulos, I.5
Zwiers, L.H.6
-
62
-
-
0026519029
-
Rapid extraction of fungal DNA for PCR amplification
-
10.1093/nar/20.9.2380, 312363, 1594460
-
Cenis JL. Rapid extraction of fungal DNA for PCR amplification. Nucleic Acids Res 1992, 20:2380. 10.1093/nar/20.9.2380, 312363, 1594460.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2380
-
-
Cenis, J.L.1
-
63
-
-
84900862838
-
Scythe homepage
-
Scythe homepage. [https://github.com/vsbuffalo/scythe].
-
-
-
-
64
-
-
84900858974
-
Sickle homepage
-
Sickle homepage. [https://github.com/najoshi/sickle].
-
-
-
-
65
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
10.1101/gr.074492.107, 2336801, 18349386
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008, 18(5):821-829. 10.1101/gr.074492.107, 2336801, 18349386.
-
(2008)
Genome Res
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
66
-
-
0032849859
-
CAP3: a DNA sequence assembly program
-
10.1101/gr.9.9.868, 310812, 10508846
-
Huang X, Madan A. CAP3: a DNA sequence assembly program. Genome Res 1999, 9:868-877. 10.1101/gr.9.9.868, 310812, 10508846.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
67
-
-
79960264362
-
Full-length transcriptome assembly from RNA-seq data without a reference genome
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat Biotechnol 2011, 29:1-17.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 1-17
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
Adiconis, X.7
Fan, L.8
Raychowdhury, R.9
Zeng, Q.10
Chen, Z.11
Mauceli, E.12
Hacohen, N.13
Gnirke, A.14
Rhind, N.15
di Palma, F.16
Birren, B.W.17
Nusbaum, C.18
Lindblad-Toh, K.19
Friedman, N.20
Regev, A.21
more..
-
68
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
10.1093/bioinformatics/bti310, 15728110
-
Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21:1859-1875. 10.1093/bioinformatics/bti310, 15728110.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
69
-
-
77955368745
-
RepeatMasker Open-3.0. 1996-2010
-
Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. 1996-2010. [http://www.repeatmasker.org].
-
-
-
Smit, A.F.A.1
Hubley, R.2
Green, P.3
-
70
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
10.1038/nprot.2012.016, 3334321, 22383036
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 2012, 7(3):562-578. 10.1038/nprot.2012.016, 3334321, 22383036.
-
(2012)
Nat Protoc
, vol.7
, Issue.3
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
71
-
-
34547582418
-
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
-
10.1093/nar/gkm391, 1933232, 17631615
-
Kong L, Zhang Y, Ye ZQ, Liu XQ, Zhao SQ, Wei L, Gao G. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res 2007, 35:W345-W349. 10.1093/nar/gkm391, 1933232, 17631615.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.Q.3
Liu, X.Q.4
Zhao, S.Q.5
Wei, L.6
Gao, G.7
-
72
-
-
69949152972
-
A fungal phylogeny based on 82 complete genomes using the composition vector method
-
10.1186/1471-2148-9-195, 3087519, 19664262
-
Wang H, Xu Z, Gao L, Hao B. A fungal phylogeny based on 82 complete genomes using the composition vector method. BMC Evol Biol 2009, 9:195. 10.1186/1471-2148-9-195, 3087519, 19664262.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 195
-
-
Wang, H.1
Xu, Z.2
Gao, L.3
Hao, B.4
-
73
-
-
84865693932
-
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
-
10.1038/ng.2372, 22885923
-
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, Damm U, Buiate E, Epstein L, Alkan N, Altmüller J, Alvarado-Balderrama L, Bauser C, Becker C, Birren BW, Chen Z, Choi J, Crouch JA, Duvick JP, Farman M, Gan P, Heiman D, Henrissat B, Howard RJ, Kabbage M, Koch C, Kracher B, Kubo Y, Law AD, Lebrun M-H, et al. Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. Nat Genet 2012, 44:1060-1065. 10.1038/ng.2372, 22885923.
-
(2012)
Nat Genet
, vol.44
, pp. 1060-1065
-
-
O'Connell, R.J.1
Thon, M.R.2
Hacquard, S.3
Amyotte, S.G.4
Kleemann, J.5
Torres, M.F.6
Damm, U.7
Buiate, E.8
Epstein, L.9
Alkan, N.10
Altmüller, J.11
Alvarado-Balderrama, L.12
Bauser, C.13
Becker, C.14
Birren, B.W.15
Chen, Z.16
Choi, J.17
Crouch, J.A.18
Duvick, J.P.19
Farman, M.20
Gan, P.21
Heiman, D.22
Henrissat, B.23
Howard, R.J.24
Kabbage, M.25
Koch, C.26
Kracher, B.27
Kubo, Y.28
Law, A.D.29
Lebrun, M.-H.30
more..
-
74
-
-
67349148033
-
Broad Institute of Harvard and MIT
-
Broad Institute of Harvard and MIT. [http://www.broadinstitute.org/].
-
-
-
-
75
-
-
84896968436
-
Unitè de Recherche Genomique info
-
[urgi.versailles.inra.fr]
-
Unitè de Recherche Genomique info. [urgi.versailles.inra.fr].
-
-
-
-
76
-
-
84900870767
-
The Blumeria Sequencing Project
-
The Blumeria Sequencing Project. [http://www.blugen.org].
-
-
-
-
77
-
-
84900862117
-
LTR Finder
-
LTR Finder. [http://tlife.fudan.edu.cn/cvtree/].
-
-
-
-
78
-
-
0025183708
-
Basic local alignment search tool
-
10.1016/S0022-2836(05)80360-2, 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215:403-410. 10.1016/S0022-2836(05)80360-2, 2231712.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
79
-
-
84900867846
-
NCBI Non redundant protein database
-
NCBI Non redundant protein database. [ftp://ftp.ncbi.nih.gov/blast/db].
-
-
-
-
80
-
-
84874653073
-
Uniprot database
-
Uniprot database. [http://www.uniprot.org].
-
-
-
-
81
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
10.1093/bioinformatics/bti610, 16081474
-
Conesa A, Götz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610, 16081474.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Götz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
82
-
-
84888276387
-
Interpro
-
Interpro. [http://www.ebi.ac.uk/interpro/].
-
-
-
-
83
-
-
80055082271
-
Accelerated profile HMM searches
-
10.1371/journal.pcbi.1002195, 3197634, 22039361
-
Eddy SR. Accelerated profile HMM searches. PLoS Comput Biol 2011, 7(10):e1002195. 10.1371/journal.pcbi.1002195, 3197634, 22039361.
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.10
-
-
Eddy, S.R.1
-
84
-
-
84900875422
-
PFam
-
PFam. [http://pfam.sanger.ac.uk].
-
-
-
-
85
-
-
84900872740
-
DbCAN
-
dbCAN. [http://csbl.bmb.uga.edu/dbCAN/].
-
-
-
-
86
-
-
84900848812
-
PHI-base
-
PHI-base. [http://www.phi-base.org].
-
-
-
-
87
-
-
84900873139
-
MEROPS
-
MEROPS. [http://merops.sanger.ac.uk].
-
-
-
-
88
-
-
84900865955
-
C2H2 ZNF db
-
C2H2 ZNF db. [http://kzfgd.pzr.uni-rostock.de:8080/KZGD2007].
-
-
-
-
89
-
-
84900843963
-
TCDB
-
TCDB. [http://www.tcdb.org].
-
-
-
-
90
-
-
84900853341
-
GPCRDB
-
GPCRDB. [http://www.gpcr.org].
-
-
-
-
91
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 1995, 57:289-300.
-
(1995)
J R Stat Soc Ser B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
92
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
10.1093/bioinformatics/btp324, 2705234, 19451168
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
|