-
1
-
-
84866683064
-
Understanding the lethal variant of prostate cancer: Power of examining extremes
-
Aparicio, A.; Logothetis, C.J.; Maity, S.N. Understanding the lethal variant of prostate cancer: Power of examining extremes. Cancer Discov. 2011, 1, 466-468.
-
(2011)
Cancer Discov
, vol.1
, pp. 466-468
-
-
Aparicio, A.1
Logothetis, C.J.2
Maity, S.N.3
-
2
-
-
35048868879
-
Treatment outcomes of small cell carcinoma of the prostate: A single-center study
-
Spiess, P.E.; Pettaway, C.A.; Vakar-Lopez, F.; Kassouf, W.; Wang, X.; Busby, J.E.; Do, K.A.; Davuluri, R.; Tannir, N.M. Treatment outcomes of small cell carcinoma of the prostate: A single-center study. Cancer 2007, 110, 1729-1737.
-
(2007)
Cancer
, vol.110
, pp. 1729-1737
-
-
Spiess, P.E.1
Pettaway, C.A.2
Vakar-Lopez, F.3
Kassouf, W.4
Wang, X.5
Busby, J.E.6
Do, K.A.7
Davuluri, R.8
Tannir, N.M.9
-
3
-
-
37549037864
-
Small cell carcinoma of the prostate. A morphologic and immunohistochemical study of 95 cases
-
Wang, W.; Epstein, J.I. Small cell carcinoma of the prostate. A morphologic and immunohistochemical study of 95 cases. Am. J. Surg. Pathol. 2008, 32, 65-71.
-
(2008)
Am. J. Surg. Pathol
, vol.32
, pp. 65-71
-
-
Wang, W.1
Epstein, J.I.2
-
4
-
-
84860168795
-
Molecular characterization of neuroendocrine prostate cancer and identification of new drug targets
-
Beltran, H.; Rickman, D.S.; Park, K.; Chae, S.S.; Sboner, A.; MacDonald, T.Y.; Wang, Y.; Sheikh, K.L.; Terry, S.; Tagawa, S.T.; et al. Molecular characterization of neuroendocrine prostate cancer and identification of new drug targets. Cancer Discov. 2011, 1, 487-495.
-
(2011)
Cancer Discov
, vol.1
, pp. 487-495
-
-
Beltran, H.1
Rickman, D.S.2
Park, K.3
Chae, S.S.4
Sboner, A.5
Macdonald, T.Y.6
Wang, Y.7
Sheikh, K.L.8
Terry, S.9
Tagawa, S.T.10
-
5
-
-
84871613362
-
Randomized phase II study of danusertib in patients with metastatic castration-resistant prostate cancer after docetaxel failure
-
Meulenbeld, H.J.; Bleuse, J.P.; Vinci, E.M.; Raymond, E.; Vitali, G.; Santoro, A.; Dogliotti, L.; Berardi, R.; Cappuzzo, F.; Tagawa, S.T.; et al. Randomized phase II study of danusertib in patients with metastatic castration-resistant prostate cancer after docetaxel failure. BJU Int. 2013, 111, 44-52.
-
(2013)
BJU Int
, vol.111
, pp. 44-52
-
-
Meulenbeld, H.J.1
Bleuse, J.P.2
Vinci, E.M.3
Raymond, E.4
Vitali, G.5
Santoro, A.6
Dogliotti, L.7
Berardi, R.8
Cappuzzo, F.9
Tagawa, S.T.10
-
6
-
-
84863013857
-
Modeling a lethal prostate cancer variant with small-cell carcinoma features
-
Tzelepi, V.; Zhang, J.; Lu, J.F.; Kleb, B.; Wu, G.; Wan, X.; Hoang, A.; Efstathiou, E.; Sircar, K.; Navone, N.M.; et al. Modeling a lethal prostate cancer variant with small-cell carcinoma features. Clin. Cancer Res. 2012, 18, 666-677.
-
(2012)
Clin. Cancer Res
, vol.18
, pp. 666-677
-
-
Tzelepi, V.1
Zhang, J.2
Lu, J.F.3
Kleb, B.4
Wu, G.5
Wan, X.6
Hoang, A.7
Efstathiou, E.8
Sircar, K.9
Navone, N.M.10
-
7
-
-
84863723010
-
The mutational landscape of lethal castration-resistant prostate cancer
-
Grasso, C.S.; Wu, Y.M.; Robinson, D.R.; Cao, X.; Dhanasekaran, S.M.; Khan, A.P.; Quist, M.J.; Jing, X.; Lonigro, R.J.; Brenner, J.C.; et al. The mutational landscape of lethal castration-resistant prostate cancer. Nature 2012, 487, 239-243.
-
(2012)
Nature
, vol.487
, pp. 239-243
-
-
Grasso, C.S.1
Wu, Y.M.2
Robinson, D.R.3
Cao, X.4
Dhanasekaran, S.M.5
Khan, A.P.6
Quist, M.J.7
Jing, X.8
Lonigro, R.J.9
Brenner, J.C.10
-
8
-
-
84864532021
-
FOXA1 promotes tumor progression in prostate cancer via the insulin-like growth factor binding protein 3 pathway
-
Imamura, Y.; Sakamoto, S.; Endo, T.; Utsumi, T.; Fuse, M.; Suyama, T.; Kawamura, K.; Imamoto, T.; Yano, K.; Uzawa, K.; et al. FOXA1 promotes tumor progression in prostate cancer via the insulin-like growth factor binding protein 3 pathway. PLoS One 2012, 7, e42456.
-
(2012)
PLoS One
, vol.7
-
-
Imamura, Y.1
Sakamoto, S.2
Endo, T.3
Utsumi, T.4
Fuse, M.5
Suyama, T.6
Kawamura, K.7
Imamoto, T.8
Yano, K.9
Uzawa, K.10
-
9
-
-
84894088378
-
Successful whole-exome sequencing from a prostate cancer bone metastasis biopsy
-
Van Allen, E.M.; Foye, A.; Wagle, N.; Kim, W.; Carter, S.L.; McKenna, A.; Simko, J.P.; Garraway, L.A.; Febbo, P.G. Successful whole-exome sequencing from a prostate cancer bone metastasis biopsy. Prostate Cancer Prostatic Dis. 2014, 17, 23-27.
-
(2014)
Prostate Cancer Prostatic Dis
, vol.17
, pp. 23-27
-
-
van Allen, E.M.1
Foye, A.2
Wagle, N.3
Kim, W.4
Carter, S.L.5
McKenna, A.6
Simko, J.P.7
Garraway, L.A.8
Febbo, P.G.9
-
10
-
-
84900491589
-
-
Genetic Resources Core Facility. Available online, accessed on 2 January
-
Genetic Resources Core Facility. Available online: http://grcf.jhmi.edu/ (accessed on 2 January 2014).
-
(2014)
-
-
-
11
-
-
3543105225
-
Circular binary segmentation for the analysis of array-based DNA copy number data
-
Olshen, A.B.; Venkatraman, E.S.; Lucito, R.; Wigler, M. Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 2004, 5, 557-572.
-
(2004)
Biostatistics
, vol.5
, pp. 557-572
-
-
Olshen, A.B.1
Venkatraman, E.S.2
Lucito, R.3
Wigler, M.4
-
12
-
-
84886541754
-
EXCAVATOR: Detecting copy number variants from whole-exome sequencing data
-
doi:10.1186/gb-2013-14-10-r120
-
Magi, A.; Tattini, L.; Cifola, I.; D'Aurizio, R.; Benelli, M.; Mangano, E.; Battaglia, C.; Bonora, E.; Kurg, A.; Seri, M.; et al. EXCAVATOR: Detecting copy number variants from whole-exome sequencing data. Genome Biol. 2013, doi:10.1186/gb-2013-14-10-r120.
-
(2013)
Genome Biol
-
-
Magi, A.1
Tattini, L.2
Cifola, I.3
D'Aurizio, R.4
Benelli, M.5
Mangano, E.6
Battaglia, C.7
Bonora, E.8
Kurg, A.9
Seri, M.10
-
13
-
-
84900492676
-
CIDRSeqSuite 2.0: An automated analysis pipeline for next-generation sequencing
-
Montreal, QC, Canada, 12 October
-
Barnhart, M.G.S.; Hetrick, K.; Goldstein, J.; Marosy, D.; Mohr, D.; Craig, B.; Watkins, L., Jr.; Doheny, K. CIDRSeqSuite 2.0: An automated analysis pipeline for next-generation sequencing. In Proceedings of the presented at the 61st annual meeting of the American society for human genetics, Montreal, QC, Canada, 12 October 2011.
-
(2011)
Proceedings of the Presented At the 61st Annual Meeting of the American Society For Human Genetics
-
-
Barnhart, M.G.S.1
Hetrick, K.2
Goldstein, J.3
Marosy, D.4
Mohr, D.5
Craig, B.6
Watkins Jr., L.7
Doheny, K.8
-
14
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li, H.; Durbin, R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 2010, 26, 589-595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
15
-
-
84900486772
-
-
Available online, accessed on 2 January
-
Picard. Available online: http://picard.sourceforge.net/ (accessed on 2 January 2014).
-
(2014)
-
-
Picard1
-
16
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A.; Hanna, M.; Banks, E.; Sivachenko, A.; Cibulskis, K.; Kernytsky, A.; Garimella, K.; Altshuler, D.; Gabriel, S.; Daly, M.; et al. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010, 20, 1297-1303.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
-
17
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M.A.; Banks, E.; Poplin, R.; Garimella, K.V.; Maguire, J.R.; Hartl, C.; Philippakis, A.A.; del Angel, G.; Rivas, M.A.; Hanna, M.; et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 2011, 43, 491-498.
-
(2011)
Nat. Genet
, vol.43
, pp. 491-498
-
-
Depristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Philippakis, A.A.7
del Angel, G.8
Rivas, M.A.9
Hanna, M.10
-
18
-
-
84896009017
-
From FastQ data to high-confidence variant calls: The genome analysis toolkit best practices pipeline
-
Van der Auwera, G.A.; Carneiro, M.O.; Hartl, C.; Poplin, R.; del Angel, G.; Levy-Moonshine, A.; Jordan, T.; Shakir, K.; Roazen, D.; Thibault, J.; et al. From FastQ data to high-confidence variant calls: The genome analysis toolkit best practices pipeline. Curr. Protoc. Bioinform. 2013, 11, 1-33.
-
(2013)
Curr. Protoc. Bioinform
, vol.11
, pp. 1-33
-
-
Van der Auwera, G.A.1
Carneiro, M.O.2
Hartl, C.3
Poplin, R.4
del Angel, G.5
Levy-Moonshine, A.6
Jordan, T.7
Shakir, K.8
Roazen, D.9
Thibault, J.10
-
19
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
Wang, K.; Li, M.; Hakonarson, H. ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010, 38, e164.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
20
-
-
84900488056
-
-
Scripps Genome Adviser. Available online, accessed on 2 January
-
Scripps Genome Adviser. Available online: http://genomics.scripps.edu/ADVISER/ (accessed on 2 January 2014).
-
(2014)
-
-
-
21
-
-
84864153492
-
Strelka: Accurate somatic small-variant calling from sequenced tumor-normal sample pairs
-
Saunders, C.T.; Wong, W.S.; Swamy, S.; Becq, J.; Murray, L.J.; Cheetham, R.K. Strelka: Accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics 2012, 28, 1811-1817.
-
(2012)
Bioinformatics
, vol.28
, pp. 1811-1817
-
-
Saunders, C.T.1
Wong, W.S.2
Swamy, S.3
Becq, J.4
Murray, L.J.5
Cheetham, R.K.6
-
22
-
-
84876963318
-
Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs
-
doi:10.1186/1471-2164-14-302
-
Christoforides, A.; Carpten, J.D.; Weiss, G.J.; Demeure, M.J.; von Hoff, D.D.; Craig, D.W. Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs. BMC Genomics 2013, doi:10.1186/1471-2164-14-302.
-
(2013)
BMC Genomics
-
-
Christoforides, A.1
Carpten, J.D.2
Weiss, G.J.3
Demeure, M.J.4
von Hoff, D.D.5
Craig, D.W.6
-
23
-
-
84900493661
-
-
IntOgen: Interactive Onco Genomics Mutations Server. Available online, accessed 4 January
-
IntOgen: Interactive Onco Genomics Mutations Server. Available online: http://www.intogen.org/ mutations/ (accessed 4 January 2014).
-
(2014)
-
-
-
24
-
-
84887032986
-
IntOGen-mutations identifies cancer drivers across tumor types
-
Gonzalez-Perez, A.; Perez-Llamas, C.; Deu-Pons, J.; Tamborero, D.; Schroeder, M.P.; Jene-Sanz, A.; Santos, A.; Lopez-Bigas, N. IntOGen-mutations identifies cancer drivers across tumor types. Nat. Methods 2013, 10, 1081-1082.
-
(2013)
Nat. Methods
, vol.10
, pp. 1081-1082
-
-
Gonzalez-Perez, A.1
Perez-Llamas, C.2
Deu-Pons, J.3
Tamborero, D.4
Schroeder, M.P.5
Jene-Sanz, A.6
Santos, A.7
Lopez-Bigas, N.8
-
25
-
-
84900486017
-
-
Condel: CONsensus DELeteriousness Score of Missense SNVs Server. Available online, accessed 4 January
-
Condel: CONsensus DELeteriousness Score of Missense SNVs Server. Available online: http://bg.upf.edu/condel/analysis/ (accessed 4 January 2014).
-
(2014)
-
-
-
26
-
-
79953715693
-
Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel
-
Gonzalez-Perez, A.; Lopez-Bigas, N. Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel. Am. J. Hum. Genet. 2011, 88, 440-449.
-
(2011)
Am. J. Hum. Genet
, vol.88
, pp. 440-449
-
-
Gonzalez-Perez, A.1
Lopez-Bigas, N.2
-
27
-
-
84886305934
-
Balancing chromatin remodeling and histone modifications in transcription
-
Petty, E.; Pillus, L. Balancing chromatin remodeling and histone modifications in transcription. Trends Genet. 2013, 29, 621-629.
-
(2013)
Trends Genet
, vol.29
, pp. 621-629
-
-
Petty, E.1
Pillus, L.2
-
28
-
-
66349125086
-
miR-181a regulates cap-dependent translation of p27(kip1) mRNA in myeloid cells
-
Cuesta, R.; Martinez-Sanchez, A.; Gebauer, F. miR-181a regulates cap-dependent translation of p27(kip1) mRNA in myeloid cells. Mol. Cell. Biol. 2009, 29, 2841-2851.
-
(2009)
Mol. Cell. Biol
, vol.29
, pp. 2841-2851
-
-
Cuesta, R.1
Martinez-Sanchez, A.2
Gebauer, F.3
-
29
-
-
0032511848
-
The murine gene p27Kip1 is haplo-insufficient for tumor suppression
-
Fero, M.L.; Randel, E.; Gurley, K.E.; Roberts, J.M.; Kemp, C.J. The murine gene p27Kip1 is haplo-insufficient for tumor suppression. Nature 1998, 396, 177-180.
-
(1998)
Nature
, vol.396
, pp. 177-180
-
-
Fero, M.L.1
Randel, E.2
Gurley, K.E.3
Roberts, J.M.4
Kemp, C.J.5
-
30
-
-
41149150219
-
The Cdk inhibitor p27 in human cancer: Prognostic potential and relevance to anticancer therapy
-
Chu, I.M.; Hengst, L.; Slingerland, J.M. The Cdk inhibitor p27 in human cancer: Prognostic potential and relevance to anticancer therapy. Nat. Rev. Cancer 2008, 8, 253-267.
-
(2008)
Nat. Rev. Cancer
, vol.8
, pp. 253-267
-
-
Chu, I.M.1
Hengst, L.2
Slingerland, J.M.3
-
31
-
-
77951115122
-
International network of cancer genome projects
-
Hudson, T.J.; Anderson, W.; Artez, A.; Barker, A.D.; Bell, C.; Bernabe, R.R.; Bhan, M.K.; Calvo, F.; Eerola, I.; Gerhard, D.S.; et al. International network of cancer genome projects. Nature 2010, 464, 993-998.
-
(2010)
Nature
, vol.464
, pp. 993-998
-
-
Hudson, T.J.1
Anderson, W.2
Artez, A.3
Barker, A.D.4
Bell, C.5
Bernabe, R.R.6
Bhan, M.K.7
Calvo, F.8
Eerola, I.9
Gerhard, D.S.10
-
32
-
-
84884994218
-
The Cancer Genome Atlas Pan-Cancer analysis project
-
Weinstein, J.N.; Collisson, E.A.; Mills, G.B.; Shaw, K.R.; Ozenberger, B.A.; Ellrott, K.; Shmulevich, I.; Sander, C.; Stuart, J.M. The Cancer Genome Atlas Pan-Cancer analysis project. Nat. Genet. 2013, 45, 1113-1120.
-
(2013)
Nat. Genet
, vol.45
, pp. 1113-1120
-
-
Weinstein, J.N.1
Collisson, E.A.2
Mills, G.B.3
Shaw, K.R.4
Ozenberger, B.A.5
Ellrott, K.6
Shmulevich, I.7
Sander, C.8
Stuart, J.M.9
-
33
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J.T.; Thorvaldsdottir, H.; Winckler, W.; Guttman, M.; Lander, E.S.; Getz, G.; Mesirov, J.P. Integrative genomics viewer. Nat. Biotechnol. 2011, 29, 24-26.
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
34
-
-
84885129618
-
Comprehensive identification of mutational cancer driver genes across 12 tumor types
-
doi:10.1038/srep02650
-
Tamborero, D.; Gonzalez-Perez, A.; Perez-Llamas, C.; Deu-Pons, J.; Kandoth, C.; Reimand, J.; Lawrence, M.S.; Getz, G.; Bader, G.D.; Ding, L.; et al. Comprehensive identification of mutational cancer driver genes across 12 tumor types. Sci. Rep. 2013, doi:10.1038/srep02650.
-
(2013)
Sci. Rep
-
-
Tamborero, D.1
Gonzalez-Perez, A.2
Perez-Llamas, C.3
Deu-Pons, J.4
Kandoth, C.5
Reimand, J.6
Lawrence, M.S.7
Getz, G.8
Bader, G.D.9
Ding, L.10
-
35
-
-
84861581164
-
Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
-
Barbieri, C.E.; Baca, S.C.; Lawrence, M.S.; Demichelis, F.; Blattner, M.; Theurillat, J.P.; White, T.A.; Stojanov, P.; van Allen, E.; Stransky, N.; et al. Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer. Nat. Genet. 2012, 44, 685-689.
-
(2012)
Nat. Genet
, vol.44
, pp. 685-689
-
-
Barbieri, C.E.1
Baca, S.C.2
Lawrence, M.S.3
Demichelis, F.4
Blattner, M.5
Theurillat, J.P.6
White, T.A.7
Stojanov, P.8
van Allen, E.9
Stransky, N.10
-
36
-
-
0027270989
-
Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5
-
Clark, K.L.; Halay, E.D.; Lai, E.; Burley, S.K. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5. Nature 1993, 364, 412-420.
-
(1993)
Nature
, vol.364
, pp. 412-420
-
-
Clark, K.L.1
Halay, E.D.2
Lai, E.3
Burley, S.K.4
-
37
-
-
84877747485
-
CHD1 is a 5q21 tumor suppressor required for ERG rearrangement in prostate cancer
-
Burkhardt, L.; Fuchs, S.; Krohn, A.; Masser, S.; Mader, M.; Kluth, M.; Bachmann, F.; Huland, H.; Steuber, T.; Graefen, M.; et al. CHD1 is a 5q21 tumor suppressor required for ERG rearrangement in prostate cancer. Cancer Res. 2013, 73, 2795-2805.
-
(2013)
Cancer Res
, vol.73
, pp. 2795-2805
-
-
Burkhardt, L.1
Fuchs, S.2
Krohn, A.3
Masser, S.4
Mader, M.5
Kluth, M.6
Bachmann, F.7
Huland, H.8
Steuber, T.9
Graefen, M.10
-
38
-
-
84869118340
-
Somatic mutations of PIK3R1 promote gliomagenesis
-
Quayle, S.N.; Lee, J.Y.; Cheung, L.W.; Ding, L.; Wiedemeyer, R.; Dewan, R.W.; Huang-Hobbs, E.; Zhuang, L.; Wilson, R.K.; Ligon, K.L.; et al. Somatic mutations of PIK3R1 promote gliomagenesis. PLoS One 2012, 7, e49466.
-
(2012)
PLoS One
, vol.7
-
-
Quayle, S.N.1
Lee, J.Y.2
Cheung, L.W.3
Ding, L.4
Wiedemeyer, R.5
Dewan, R.W.6
Huang-Hobbs, E.7
Zhuang, L.8
Wilson, R.K.9
Ligon, K.L.10
-
39
-
-
80053910029
-
Nck2 promotes human melanoma cell proliferation, migration and invasion in vitro and primary melanoma-derived tumor growth in vivo
-
doi:10.1186/1471-2407-11-443
-
Labelle-Cote, M.; Dusseault, J.; Ismail, S.; Picard-Cloutier, A.; Siegel, P.M.; Larose, L. Nck2 promotes human melanoma cell proliferation, migration and invasion in vitro and primary melanoma-derived tumor growth in vivo. BMC Cancer 2011, doi:10.1186/1471-2407-11-443.
-
(2011)
BMC Cancer
-
-
Labelle-Cote, M.1
Dusseault, J.2
Ismail, S.3
Picard-Cloutier, A.4
Siegel, P.M.5
Larose, L.6
-
40
-
-
15544371485
-
Complex genomic rearrangements lead to novel primate gene function
-
Ciccarelli, F.D.; von Mering, C.; Suyama, M.; Harrington, E.D.; Izaurralde, E.; Bork, P. Complex genomic rearrangements lead to novel primate gene function. Genome Res. 2005, 15, 343-351.
-
(2005)
Genome Res
, vol.15
, pp. 343-351
-
-
Ciccarelli, F.D.1
von Mering, C.2
Suyama, M.3
Harrington, E.D.4
Izaurralde, E.5
Bork, P.6
-
41
-
-
79952195770
-
Molecular clustering based on ERalpha and EIG121 predicts survival in high-grade serous carcinoma of the ovary/peritoneum
-
Schlumbrecht, M.P.; Xie, S.S.; Shipley, G.L.; Urbauer, D.L.; Broaddus, R.R. Molecular clustering based on ERalpha and EIG121 predicts survival in high-grade serous carcinoma of the ovary/peritoneum. Mod. Pathol. 2011, 24, 453-462.
-
(2011)
Mod. Pathol
, vol.24
, pp. 453-462
-
-
Schlumbrecht, M.P.1
Xie, S.S.2
Shipley, G.L.3
Urbauer, D.L.4
Broaddus, R.R.5
-
42
-
-
79959968916
-
The novel estrogen-induced gene EIG121 regulates autophagy and promotes cell survival under stress
-
doi:10.1038/cddis.2010.9
-
Deng, L.; Feng, J.; Broaddus, R.R. The novel estrogen-induced gene EIG121 regulates autophagy and promotes cell survival under stress. Cell Death Dis. 2010, doi:10.1038/cddis.2010.9.
-
(2010)
Cell Death Dis
-
-
Deng, L.1
Feng, J.2
Broaddus, R.R.3
-
43
-
-
84865296967
-
Expression and prognostic significance of MAP4K4 in lung adenocarcinoma
-
Qiu, M.H.; Qian, Y.M.; Zhao, X.L.; Wang, S.M.; Feng, X.J.; Chen, X.F.; Zhang, S.H. Expression and prognostic significance of MAP4K4 in lung adenocarcinoma. Pathol. Res. Pract. 2012, 208, 541-548.
-
(2012)
Pathol. Res. Pract
, vol.208
, pp. 541-548
-
-
Qiu, M.H.1
Qian, Y.M.2
Zhao, X.L.3
Wang, S.M.4
Feng, X.J.5
Chen, X.F.6
Zhang, S.H.7
-
44
-
-
84871857826
-
RBFOX2 is an important regulator of mesenchymal tissue-specific splicing in both normal and cancer tissues
-
Venables, J.P.; Brosseau, J.P.; Gadea, G.; Klinck, R.; Prinos, P.; Beaulieu, J.F.; Lapointe, E.; Durand, M.; Thibault, P.; Tremblay, K.; et al. RBFOX2 is an important regulator of mesenchymal tissue-specific splicing in both normal and cancer tissues. Mol. Cell. Biol. 2013, 33, 396-405.
-
(2013)
Mol. Cell. Biol
, vol.33
, pp. 396-405
-
-
Venables, J.P.1
Brosseau, J.P.2
Gadea, G.3
Klinck, R.4
Prinos, P.5
Beaulieu, J.F.6
Lapointe, E.7
Durand, M.8
Thibault, P.9
Tremblay, K.10
-
45
-
-
84871726922
-
Exome capture sequencing of adenoma reveals genetic alterations in multiple cellular pathways at the early stage of colorectal tumorigenesis
-
Zhou, D.; Yang, L.; Zheng, L.; Ge, W.; Li, D.; Zhang, Y.; Hu, X.; Gao, Z.; Xu, J.; Huang, Y.; et al. Exome capture sequencing of adenoma reveals genetic alterations in multiple cellular pathways at the early stage of colorectal tumorigenesis. PLoS One 2013, 8, e53310.
-
(2013)
PLoS One
, vol.8
-
-
Zhou, D.1
Yang, L.2
Zheng, L.3
Ge, W.4
Li, D.5
Zhang, Y.6
Hu, X.7
Gao, Z.8
Xu, J.9
Huang, Y.10
-
46
-
-
0034811007
-
Identification and characterization of a novel human testis-specific kinase substrate gene which is downregulated in testicular tumors
-
Scorilas, A.; Yousef, G.M.; Jung, K.; Rajpert-De Meyts, E.; Carsten, S.; Diamandis, E.P. Identification and characterization of a novel human testis-specific kinase substrate gene which is downregulated in testicular tumors. Biochem. Biophys. Res. Commun. 2001, 285, 400-408.
-
(2001)
Biochem. Biophys. Res. Commun
, vol.285
, pp. 400-408
-
-
Scorilas, A.1
Yousef, G.M.2
Jung, K.3
Rajpert-De, M.E.4
Carsten, S.5
Diamandis, E.P.6
-
47
-
-
84880810108
-
NTRK3 is a potential tumor suppressor gene commonly inactivated by epigenetic mechanisms in colorectal cancer
-
Luo, Y.; Kaz, A.M.; Kanngurn, S.; Welsch, P.; Morris, S.M.; Wang, J.; Lutterbaugh, J.D.; Markowitz, S.D.; Grady, W.M. NTRK3 is a potential tumor suppressor gene commonly inactivated by epigenetic mechanisms in colorectal cancer. PLoS Genet. 2013, 9, e1003552.
-
(2013)
PLoS Genet
, vol.9
-
-
Luo, Y.1
Kaz, A.M.2
Kanngurn, S.3
Welsch, P.4
Morris, S.M.5
Wang, J.6
Lutterbaugh, J.D.7
Markowitz, S.D.8
Grady, W.M.9
-
48
-
-
79952567273
-
Characterization of a newly identified ETV6-NTRK3 fusion transcript in acute myeloid leukemia
-
doi:10.1186/ 1746-1596-6-19
-
Kralik, J.M.; Kranewitter, W.; Boesmueller, H.; Marschon, R.; Tschurtschenthaler, G.; Rumpold, H.; Wiesinger, K.; Erdel, M.; Petzer, A.L.; Webersinke, G. Characterization of a newly identified ETV6-NTRK3 fusion transcript in acute myeloid leukemia. Diagn. Pathol. 2011, doi:10.1186/ 1746-1596-6-19.
-
(2011)
Diagn. Pathol
-
-
Kralik, J.M.1
Kranewitter, W.2
Boesmueller, H.3
Marschon, R.4
Tschurtschenthaler, G.5
Rumpold, H.6
Wiesinger, K.7
Erdel, M.8
Petzer, A.L.9
Webersinke, G.10
-
49
-
-
84873322889
-
Gene expression profile of a newly established choriocarcinoma cell line, iC3-1, compared to existing choriocarcinoma cell lines and normal placenta
-
Kobayashi, Y.; Banno, K.; Shimizu, T.; Ueki, A.; Tsuji, K.; Masuda, K.; Kisu, I.; Nomura, H.; Tominaga, E.; Nagano, O.; et al. Gene expression profile of a newly established choriocarcinoma cell line, iC3-1, compared to existing choriocarcinoma cell lines and normal placenta. Placenta 2013, 34, 110-118.
-
(2013)
Placenta
, vol.34
, pp. 110-118
-
-
Kobayashi, Y.1
Banno, K.2
Shimizu, T.3
Ueki, A.4
Tsuji, K.5
Masuda, K.6
Kisu, I.7
Nomura, H.8
Tominaga, E.9
Nagano, O.10
-
50
-
-
84876406080
-
Downregulation of the microRNA biogenesis components and its association with poor prognosis in hepatocellular carcinoma
-
Kitagawa, N.; Ojima, H.; Shirakihara, T.; Shimizu, H.; Kokubu, A.; Urushidate, T.; Totoki, Y.; Kosuge, T.; Miyagawa, S.; Shibata, T. Downregulation of the microRNA biogenesis components and its association with poor prognosis in hepatocellular carcinoma. Cancer Sci. 2013, 104, 543-551.
-
(2013)
Cancer Sci
, vol.104
, pp. 543-551
-
-
Kitagawa, N.1
Ojima, H.2
Shirakihara, T.3
Shimizu, H.4
Kokubu, A.5
Urushidate, T.6
Totoki, Y.7
Kosuge, T.8
Miyagawa, S.9
Shibata, T.10
-
51
-
-
84868225511
-
The DEAD/DEAH box helicase, DDX11, is essential for the survival of advanced melanomas
-
doi:10.1186/1476-4598-11-82
-
Bhattacharya, C.; Wang, X.; Becker, D. The DEAD/DEAH box helicase, DDX11, is essential for the survival of advanced melanomas. Mol. Cancer 2012, doi:10.1186/1476-4598-11-82.
-
(2012)
Mol. Cancer
-
-
Bhattacharya, C.1
Wang, X.2
Becker, D.3
-
52
-
-
84865031128
-
Expression profiling of dipeptidyl peptidase 8 and 9 in breast and ovarian carcinoma cell lines
-
Wilson, C.H.; Abbott, C.A. Expression profiling of dipeptidyl peptidase 8 and 9 in breast and ovarian carcinoma cell lines. Int. J. Oncol. 2012, 41, 919-932.
-
(2012)
Int. J. Oncol
, vol.41
, pp. 919-932
-
-
Wilson, C.H.1
Abbott, C.A.2
-
53
-
-
84896701791
-
Annexin A11 in disease
-
Wang, J.; Guo, C.; Liu, S.; Qi, H.; Yin, Y.; Liang, R.; Sun, M.Z.; Greenaway, F.T. Annexin A11 in disease. Clin. Chim. Acta 2014, 431, 164-168.
-
(2014)
Clin. Chim. Acta
, vol.431
, pp. 164-168
-
-
Wang, J.1
Guo, C.2
Liu, S.3
Qi, H.4
Yin, Y.5
Liang, R.6
Sun, M.Z.7
Greenaway, F.T.8
-
54
-
-
84887122461
-
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
-
Prensner, J.R.; Iyer, M.K.; Sahu, A.; Asangani, I.A.; Cao, Q.; Patel, L.; Vergara, I.A.; Davicioni, E.; Erho, N.; Ghadessi, M.; et al. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. Nat. Genet. 2013, 45, 1392-1398.
-
(2013)
Nat. Genet
, vol.45
, pp. 1392-1398
-
-
Prensner, J.R.1
Iyer, M.K.2
Sahu, A.3
Asangani, I.A.4
Cao, Q.5
Patel, L.6
Vergara, I.A.7
Davicioni, E.8
Erho, N.9
Ghadessi, M.10
-
55
-
-
84883132550
-
lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs
-
Yang, L.; Lin, C.; Jin, C.; Yang, J.C.; Tanasa, B.; Li, W.; Merkurjev, D.; Ohgi, K.A.; Meng, D.; Zhang, J.; et al. lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs. Nature 2013, 500, 598-602.
-
(2013)
Nature
, vol.500
, pp. 598-602
-
-
Yang, L.1
Lin, C.2
Jin, C.3
Yang, J.C.4
Tanasa, B.5
Li, W.6
Merkurjev, D.7
Ohgi, K.A.8
Meng, D.9
Zhang, J.10
-
56
-
-
84884997982
-
Emerging landscape of oncogenic signatures across human cancers
-
Ciriello, G.; Miller, M.L.; Aksoy, B.A.; Senbabaoglu, Y.; Schultz, N.; Sander, C. Emerging landscape of oncogenic signatures across human cancers. Nat. Genet. 2013, 45, 1127-1133.
-
(2013)
Nat. Genet
, vol.45
, pp. 1127-1133
-
-
Ciriello, G.1
Miller, M.L.2
Aksoy, B.A.3
Senbabaoglu, Y.4
Schultz, N.5
Sander, C.6
-
57
-
-
79953153894
-
Cyclin D1 is a selective modifier of androgen-dependent signaling and androgen receptor function
-
Comstock, C.E.; Augello, M.A.; Schiewer, M.J.; Karch, J.; Burd, C.J.; Ertel, A.; Knudsen, E.S.; Jessen, W.J.; Aronow, B.J.; Knudsen, K.E. Cyclin D1 is a selective modifier of androgen-dependent signaling and androgen receptor function. J. Biol. Chem. 2011, 286, 8117-8127.
-
(2011)
J. Biol. Chem
, vol.286
, pp. 8117-8127
-
-
Comstock, C.E.1
Augello, M.A.2
Schiewer, M.J.3
Karch, J.4
Burd, C.J.5
Ertel, A.6
Knudsen, E.S.7
Jessen, W.J.8
Aronow, B.J.9
Knudsen, K.E.10
-
58
-
-
84899960463
-
Up-expression of FOXC1 correlates with poor prognosis in gastric cancer patients
-
doi:10.1111/his.12347
-
Xu, Y.; Shao, Q.S.; Yao, H.B.; Jin, Y.; Ma, Y.Y.; Jia, L.H. Up-expression of FOXC1 correlates with poor prognosis in gastric cancer patients. Histopathology 2013, doi:10.1111/his.12347.
-
(2013)
Histopathology
-
-
Xu, Y.1
Shao, Q.S.2
Yao, H.B.3
Jin, Y.4
Ma, Y.Y.5
Jia, L.H.6
-
59
-
-
84877146681
-
High expression of FOXC1 is associated with poor clinical outcome in non-small cell lung cancer patients
-
Wei, L.X.; Zhou, R.S.; Xu, H.F.; Wang, J.Y.; Yuan, M.H. High expression of FOXC1 is associated with poor clinical outcome in non-small cell lung cancer patients. Tumour Biol. 2013, 34, 941-946.
-
(2013)
Tumour Biol
, vol.34
, pp. 941-946
-
-
Wei, L.X.1
Zhou, R.S.2
Xu, H.F.3
Wang, J.Y.4
Yuan, M.H.5
-
60
-
-
84863791651
-
The forkhead box transcription factor FOXC1 promotes breast cancer invasion by inducing matrix metalloprotease 7 (MMP7) expression
-
Sizemore, S.T.; Keri, R.A. The forkhead box transcription factor FOXC1 promotes breast cancer invasion by inducing matrix metalloprotease 7 (MMP7) expression. J. Biol. Chem. 2012, 287, 24631-24640.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 24631-24640
-
-
Sizemore, S.T.1
Keri, R.A.2
-
61
-
-
19644373800
-
The Ter mutation in the dead end gene causes germ cell loss and testicular germ cell tumors
-
Youngren, K.K.; Coveney, D.; Peng, X.; Bhattacharya, C.; Schmidt, L.S.; Nickerson, M.L.; Lamb, B.T.; Deng, J.M.; Behringer, R.R.; Capel, B.; et al. The Ter mutation in the dead end gene causes germ cell loss and testicular germ cell tumors. Nature 2005, 435, 360-364.
-
(2005)
Nature
, vol.435
, pp. 360-364
-
-
Youngren, K.K.1
Coveney, D.2
Peng, X.3
Bhattacharya, C.4
Schmidt, L.S.5
Nickerson, M.L.6
Lamb, B.T.7
Deng, J.M.8
Behringer, R.R.9
Capel, B.10
-
62
-
-
54049118823
-
Oncogenic mutations of ALK kinase in neuroblastoma
-
Chen, Y.; Takita, J.; Choi, Y.L.; Kato, M.; Ohira, M.; Sanada, M.; Wang, L.; Soda, M.; Kikuchi, A.; Igarashi, T.; et al. Oncogenic mutations of ALK kinase in neuroblastoma. Nature 2008, 455, 971-974.
-
(2008)
Nature
, vol.455
, pp. 971-974
-
-
Chen, Y.1
Takita, J.2
Choi, Y.L.3
Kato, M.4
Ohira, M.5
Sanada, M.6
Wang, L.7
Soda, M.8
Kikuchi, A.9
Igarashi, T.10
-
63
-
-
84865979581
-
Detection of ultra-rare mutations by next-generation sequencing
-
Schmitt, M.W.; Kennedy, S.R.; Salk, J.J.; Fox, E.J.; Hiatt, J.B.; Loeb, L.A. Detection of ultra-rare mutations by next-generation sequencing. Proc. Natl. Acad. Sci. USA 2012, 109, 14508-14513.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 14508-14513
-
-
Schmitt, M.W.1
Kennedy, S.R.2
Salk, J.J.3
Fox, E.J.4
Hiatt, J.B.5
Loeb, L.A.6
-
64
-
-
84870312106
-
Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing
-
doi:10.1126/scitranslmed.3004742
-
Leary, R.J.; Sausen, M.; Kinde, I.; Papadopoulos, N.; Carpten, J.D.; Craig, D.; O'Shaughnessy, J.; Kinzler, K.W.; Parmigiani, G.; Vogelstein, B.; et al. Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing. Sci Transl. Med. 2012, doi:10.1126/scitranslmed.3004742.
-
(2012)
Sci Transl. Med
-
-
Leary, R.J.1
Sausen, M.2
Kinde, I.3
Papadopoulos, N.4
Carpten, J.D.5
Craig, D.6
O'Shaughnessy, J.7
Kinzler, K.W.8
Parmigiani, G.9
Vogelstein, B.10
-
65
-
-
84862907577
-
Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations
-
Rausch, T.; Jones, D.T.; Zapatka, M.; Stutz, A.M.; Zichner, T.; Weischenfeldt, J.; Jager, N.; Remke, M.; Shih, D.; Northcott, P.A.; et al. Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations. Cell 2012, 148, 59-71.
-
(2012)
Cell
, vol.148
, pp. 59-71
-
-
Rausch, T.1
Jones, D.T.2
Zapatka, M.3
Stutz, A.M.4
Zichner, T.5
Weischenfeldt, J.6
Jager, N.7
Remke, M.8
Shih, D.9
Northcott, P.A.10
|