Dominant effects of the diet on the microbiome and the local and systemic immune response in mice

PLoS ONE

Volumn 9, Issue 1, 2014, Pages

  Ooi, Jot Hui ^a   Waddell, Amanda ^a   Lin, Yang Ding ^a   Albert, Istvan ^a   Rust, Laura T ^a   Holden, Victoria ^a   Cantorna, Margherita T ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; DEXTRAN SULFATE;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BACTERIAL FLORA; CITROBACTER RODENTIUM; COLITIS; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; DIET; DISEASE PREDISPOSITION; DISEASE SEVERITY; ENZYME LINKED IMMUNOSORBENT ASSAY; EXPERIMENTAL AUTOIMMUNE ENCEPHALOMYELITIS; FECES MICROFLORA; FEEDING; FEMALE; GASTROINTESTINAL INFECTION; IMMUNE RESPONSE; IMMUNOPATHOLOGY; INTESTINE FLORA; MALE; METAGENOMICS; MOUSE; NONHUMAN; WILD TYPE;

ANIMALS; CITROBACTER RODENTIUM; COLITIS; DEXTRAN SULFATE; DIET; ENCEPHALOMYELITIS, AUTOIMMUNE, EXPERIMENTAL; ENTEROBACTERIACEAE INFECTIONS; FECES; FEMALE; GASTROINTESTINAL TRACT; GERM-FREE LIFE; MALE; MICE; MICROBIOTA;

EID: 84900432317     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0086366     Document Type: Article

References (30)

1. Loftus EV Jr. (2004) Clinical epidemiology of inflammatory bowel disease: Incidence, prevalence, and environmental influences. Gastroenterology 126: 1504-1517.
2. Lakatos PL (2006) Recent trends in the epidemiology of inflammatory bowel diseases: up or down? World J Gastroenterol 12: 6102-6108.
3. Halme L, Paavola-Sakki P, Turunen U, Lappalainen M, Farkkila M, et al. (2006) Family and twin studies in inflammatory bowel disease. World J Gastroenterol 12: 3668-3672. (Pubitemid 43950943)
4. Ebers GC, Kukay K, Bulman DE, Sadovnick AD, Rice G, et al. (1996) A full genome search in multiple sclerosis. Nat Genet 13: 472-476. (Pubitemid 26256624)
5. Hunter JO (2008) Is diet a factor in the pathogenesis of IBD? Inflamm Bowel Dis 14 Suppl 2: S35-36.
6. Bernstein CN, Shanahan F (2008) Disorders of a modern lifestyle: reconciling the epidemiology of inflammatory bowel diseases. Gut 57: 1185-1191.
7. Chapman-Kiddell CA, Davies PS, Gillen L, Radford-Smith GL (2010) Role of diet in the development of inflammatory bowel disease. Inflamm Bowel Dis 16: 137-151.
8. Hou JK, Abraham B, El-Serag H (2011) Dietary intake and risk of developing inflammatory bowel disease: a systematic review of the literature. Am J Gastroenterol 106: 563-573.
9. Manichanh C, Borruel N, Casellas F, Guarner F (2012) The gut microbiota in IBD. Nat Rev Gastroenterol Hepatol 9: 599-608.
10. Hugot JP (2004) Inflammatory bowel disease: a complex group of genetic disorders. Best Pract Res Clin Gastroenterol 18: 451-462.
11. Steinhoff U (2005) Who controls the crowd? New findings and old questions about the intestinal microflora. Immunol Lett 99: 12-16.
12. Gionchetti P, Rizzello F, Helwig U, Venturi A, Lammers KM, et al. (2003) Prophylaxis of pouchitis onset with probiotic therapy: a double-blind, placebo-controlled trial. Gastroenterology 124: 1202-1209. (Pubitemid 36531796)
13. Sartor RB (2004) Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: antibiotics, probiotics, and prebiotics. Gastroenterology 126: 1620-1633.
14. Sutherland L, Singleton J, Sessions J, Hanauer S, Krawitt E, et al. (1991) Double blind, placebo controlled trial of metronidazole in Crohn's disease. Gut 32: 1071-1075.
15. Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, et al. (2007) Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A 104: 13780-13785. (Pubitemid 350003397)
16. Sellon RK, Tonkonogy S, Schultz M, Dieleman LA, Grenther W, et al. (1998) Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice. Infect Immun 66: 5224-5231. (Pubitemid 29044613)
17. Lee YK, Menezes JS, Umesaki Y, Mazmanian SK (2011) Proinflammatory Tcell responses to gut microbiota promote experimental autoimmune encephalomyelitis. Proc Natl Acad Sci U S A 108 Suppl 1: 4615-4622.
18. Cantorna MT, Humpal-Winter J, DeLuca HF (1999) Dietary calcium is a major factor in 1,25-dihydroxycholecalciferol suppression of experimental autoimmune encephalomyelitis in mice. J Nutr 129: 1966-1971. (Pubitemid 29506371)
19. Ooi JH, Li Y, Rogers CJ, Cantorna MT (2013) Vitamin D regulates the gut microbiome and protects mice from dextran sodium sulfate-induced colitis. J Nutr 143: 1679-1686.
20. Froicu M, Cantorna MT (2007) Vitamin D and the vitamin D receptor are critical for control of the innate immune response to colonic injury. BMC Immunol 8: 5.
21. Varshney J, Ooi JH, Jayarao BM, Albert I, Fisher J, et al. (2013) White button mushrooms increase microbial diversity and accelerate the resolution of Citrobacter rodentium infection in mice. J Nutr 143: 526-532.
22. Cantorna MT, Hayes CE, DeLuca HF (1996) 1,25-Dihydroxyvitamin D3 reversibly blocks the progression of relapsing encephalomyelitis, a model of multiple sclerosis. Proc Natl Acad Sci U S A 93: 7861-7864. (Pubitemid 26277129)
23. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
24. Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267. (Pubitemid 47326658)
25. Kitajima S, Morimoto M, Sagara E, Shimizu C, Ikeda Y (2001) Dextran sodium sulfate-induced colitis in germ-free IQI/Jic mice. Exp Anim 50: 387-395. (Pubitemid 33692774)
26. Ochoa-Reparaz J, Mielcarz DW, Ditrio LE, Burroughs AR, Foureau DM, et al. (2009) Role of gut commensal microflora in the development of experimental autoimmune encephalomyelitis. J Immunol 183: 6041-6050.
27. Kamada N, Kim YG, Sham HP, Vallance BA, Puente JL, et al. (2012) Regulated virulence controls the ability of a pathogen to compete with the gut microbiota. Science 336: 1325-1329.
28. Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, et al. (2009) The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 1: 6ra14.
29. King TS, Woolner JT, Hunter JO (1997) Review article: the dietary management of Crohn's disease. Aliment Pharmacol Ther 11: 17-31. (Pubitemid 27067331)
30. Kleinewietfeld M, Manzel A, Titze J, Kvakan H, Yosef N, et al. (2013) Sodium chloride drives autoimmune disease by the induction of pathogenic TH17 cells. Nature 496: 518-522.