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Volumn 22, Issue 1, 2014, Pages 59-70

Global patterns of apparent copy number variation in birds revealed by cross-species comparative genomic hybridization

Author keywords

array CGH; avian; chromosome; CNVs; evolution; microarray

Indexed keywords

OLIGONUCLEOTIDE;

EID: 84900427524     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-014-9405-0     Document Type: Article
Times cited : (10)

References (61)
  • 1
    • 33745373606 scopus 로고    scopus 로고
    • Primate segmental duplications: Crucibles of evolution, diversity and disease
    • 16770338 10.1038/nrg1895
    • Bailey JA, Eichler EE (2006) Primate segmental duplications: crucibles of evolution, diversity and disease. Nat Rev Genet 7(7):552-564
    • (2006) Nat Rev Genet , vol.7 , Issue.7 , pp. 552-564
    • Bailey, J.A.1    Eichler, E.E.2
  • 2
    • 0038779976 scopus 로고    scopus 로고
    • Characterization of the atypical karyotype of the black-winged kite Elanus caeruleus (Falconiformes: Accipitridae) by means of classical and molecular cytogenetic techniques
    • 10.1023/A:1024091923939
    • Bed'Hom B, Coullin P, Guillier-Gencik Z, Moulin S, Bernheim A, Volobouev V (2003) Characterization of the atypical karyotype of the black-winged kite Elanus caeruleus (Falconiformes: Accipitridae) by means of classical and molecular cytogenetic techniques. Chromosom Res 11(4):335-343
    • (2003) Chromosom Res , vol.11 , Issue.4 , pp. 335-343
    • Bed'Hom, B.1    Coullin, P.2    Guillier-Gencik, Z.3    Moulin, S.4    Bernheim, A.5    Volobouev, V.6
  • 3
    • 77953133200 scopus 로고    scopus 로고
    • Comparative molecular evolution and phylogenetic utility of 3′-UTRs and introns in Galliformes
    • 20398778 10.1016/j.ympev.2010.04.006
    • Bonilla AJ, Braun EL, Kimball RT (2010) Comparative molecular evolution and phylogenetic utility of 3′-UTRs and introns in Galliformes. Mol Phylogenet Evol 56(2):536-542
    • (2010) Mol Phylogenet Evol , vol.56 , Issue.2 , pp. 536-542
    • Bonilla, A.J.1    Braun, E.L.2    Kimball, R.T.3
  • 4
    • 0141868811 scopus 로고    scopus 로고
    • Rapid response of cardiac obscurin gene cluster to aortic stenosis: Differential activation of Rho-GEF and MLCK and involvement in hypertrophic growth
    • 14550291 10.1016/j.bbrc.2003.09.035
    • Borisov AB, Raeker MO, Kontrogianni-Konstantopoulos A, Yang K, Kurnit DM, Bloch RJ, Russell MW (2003) Rapid response of cardiac obscurin gene cluster to aortic stenosis: differential activation of Rho-GEF and MLCK and involvement in hypertrophic growth. Biochem Biophys Res Commun 310(3):910-918
    • (2003) Biochem Biophys Res Commun , vol.310 , Issue.3 , pp. 910-918
    • Borisov, A.B.1    Raeker, M.O.2    Kontrogianni-Konstantopoulos, A.3    Yang, K.4    Kurnit, D.M.5    Bloch, R.J.6    Russell, M.W.7
  • 5
    • 28844443822 scopus 로고    scopus 로고
    • Chicken genome: Current status and future opportunities
    • 16339367 10.1101/gr.4141805
    • Burt DW (2005) Chicken genome: current status and future opportunities. Genome Res 15(12):1692-1698
    • (2005) Genome Res , vol.15 , Issue.12 , pp. 1692-1698
    • Burt, D.W.1
  • 7
    • 61849154119 scopus 로고    scopus 로고
    • Mapping DNA structural variation in dogs
    • 2661804 19015322 10.1101/gr.083741.108
    • Chen W-K, Swartz JD, Rush LJ, Alvarez CE (2009) Mapping DNA structural variation in dogs. Genome Res 19(3):500-509
    • (2009) Genome Res , vol.19 , Issue.3 , pp. 500-509
    • Chen, W.-K.1    Swartz, J.D.2    Rush, L.J.3    Alvarez, C.E.4
  • 8
    • 77956545747 scopus 로고    scopus 로고
    • Copy number variation in chemokine superfamily: The complex scene of CCL3L-CCL4L genes in health and disease
    • 2990928 20659124 10.1111/j.1365-2249.2010.04224.x
    • Colobran R, Pedrosa E, Carretero-Iglesia L, Juan M (2010) Copy number variation in chemokine superfamily: the complex scene of CCL3L-CCL4L genes in health and disease. Clin Exp Immunol 162(1):41-52
    • (2010) Clin Exp Immunol , vol.162 , Issue.1 , pp. 41-52
    • Colobran, R.1    Pedrosa, E.2    Carretero-Iglesia, L.3    Juan, M.4
  • 10
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • 10.1038/nprot.2008.211
    • Da Wei Huang BTS, Lempicki RA (2008) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4(1):44-57
    • (2008) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • Da Wei Huang, B.T.S.1    Lempicki, R.A.2
  • 11
    • 77957903598 scopus 로고    scopus 로고
    • Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis
    • 2935454 20838655 10.1371/journal.pbio.1000475
    • Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K (2010) Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol 8(9):e1000475
    • (2010) PLoS Biol , vol.8 , Issue.9 , pp. 1000475
    • Dalloul, R.A.1    Long, J.A.2    Zimin, A.V.3    Aslam, L.4    Beal, K.5    Bouffard, P.6    Burt, D.W.7    Crasta, O.8    Crooijmans, R.P.9    Cooper, K.10
  • 12
    • 34548448436 scopus 로고    scopus 로고
    • Gene copy number variation spanning 60 million years of human and primate evolution
    • 1950895 17666543 10.1101/gr.6557307
    • Dumas L, Kim YH, Karimpour-Fard A, Cox M, Hopkins J, Pollack JR, Sikela JM (2007) Gene copy number variation spanning 60 million years of human and primate evolution. Genome Res 17(9):1266-1277
    • (2007) Genome Res , vol.17 , Issue.9 , pp. 1266-1277
    • Dumas, L.1    Kim, Y.H.2    Karimpour-Fard, A.3    Cox, M.4    Hopkins, J.5    Pollack, J.R.6    Sikela, J.M.7
  • 13
    • 35348965707 scopus 로고    scopus 로고
    • From microscopes to microarrays: Dissecting recurrent chromosomal rearrangements
    • 2858421 17943194 10.1038/nrg2136
    • Emanuel BS, Saitta SC (2007) From microscopes to microarrays: dissecting recurrent chromosomal rearrangements. Nat Rev Genet 8(11):869-883
    • (2007) Nat Rev Genet , vol.8 , Issue.11 , pp. 869-883
    • Emanuel, B.S.1    Saitta, S.C.2
  • 14
    • 4043166865 scopus 로고    scopus 로고
    • Distinctive polymorphism of chicken B-FI (major histocompatibility complex class I) molecules
    • 15109057 10.1093/ps/83.4.600
    • Ewald S, Livant E (2004) Distinctive polymorphism of chicken B-FI (major histocompatibility complex class I) molecules. Poult Sci 83(4):600-605
    • (2004) Poult Sci , vol.83 , Issue.4 , pp. 600-605
    • Ewald, S.1    Livant, E.2
  • 15
  • 16
    • 77951840186 scopus 로고    scopus 로고
    • Copy number variation in the bovine genome
    • 2902221 20459598 10.1186/1471-2164-11-284
    • Fadista J, Thomsen B, Holm L-E, Bendixen C (2010) Copy number variation in the bovine genome. BMC Genomics 11(1):284
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 284
    • Fadista, J.1    Thomsen, B.2    Holm, L.-E.3    Bendixen, C.4
  • 17
    • 31144469134 scopus 로고    scopus 로고
    • Structural variation in the human genome
    • 16418744 10.1038/nrg1767
    • Feuk L, Carson AR, Scherer SW (2006) Structural variation in the human genome. Nat Rev Genet 7(2):85-97
    • (2006) Nat Rev Genet , vol.7 , Issue.2 , pp. 85-97
    • Feuk, L.1    Carson, A.R.2    Scherer, S.W.3
  • 22
    • 0037134462 scopus 로고    scopus 로고
    • Calsarcin-3, a novel skeletal muscle-specific member of the calsarcin family, interacts with multiple Z-disc proteins
    • 11842093 10.1074/jbc.M200712200
    • Frey N, Olson EN (2002) Calsarcin-3, a novel skeletal muscle-specific member of the calsarcin family, interacts with multiple Z-disc proteins. J Biol Chem 277(16):13998-14004
    • (2002) J Biol Chem , vol.277 , Issue.16 , pp. 13998-14004
    • Frey, N.1    Olson, E.N.2
  • 25
    • 34248231212 scopus 로고    scopus 로고
    • The evolution of the avian genome as revealed by comparative molecular cytogenetics
    • 10.1159/000103166
    • Griffin D, Robertson L, Tempest H, Skinner B (2007) The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenetic Genome Res 117(1-4):64-77
    • (2007) Cytogenetic Genome Res , vol.117 , Issue.1-4 , pp. 64-77
    • Griffin, D.1    Robertson, L.2    Tempest, H.3    Skinner, B.4
  • 28
    • 84861532037 scopus 로고    scopus 로고
    • Exploring the role of copy number variants in human adaptation
    • Iskow RC, Gokcumen O, Lee C (2012) Exploring the role of copy number variants in human adaptation. Trends in Genetics
    • (2012) Trends in Genetics
    • Iskow, R.C.1    Gokcumen, O.2    Lee, C.3
  • 29
    • 0030756298 scopus 로고    scopus 로고
    • Functional analysis of the nuclear LIM domain interactor NLI
    • 232417 9315627
    • Jurata LW, Gill GN (1997) Functional analysis of the nuclear LIM domain interactor NLI. Mol Cell Biol 17(10):5688-5698
    • (1997) Mol Cell Biol , vol.17 , Issue.10 , pp. 5688-5698
    • Jurata, L.W.1    Gill, G.N.2
  • 30
    • 39749144504 scopus 로고    scopus 로고
    • Molecular mechanisms of chromosomal rearrangement during primate evolution
    • 10.1007/s10577-007-1207-1
    • Kehrer-Sawatzki H, Cooper DN (2008) Molecular mechanisms of chromosomal rearrangement during primate evolution. Chromosom Res 16(1):41-56
    • (2008) Chromosom Res , vol.16 , Issue.1 , pp. 41-56
    • Kehrer-Sawatzki, H.1    Cooper, D.N.2
  • 31
    • 63049111772 scopus 로고    scopus 로고
    • A multigene phylogeny of Galliformes supports a single origin of erectile ability in non-feathered facial traits
    • Kimball RT, Braun EL (2008) A multigene phylogeny of Galliformes supports a single origin of erectile ability in non-feathered facial traits. J Avian Biol 39(4):438-445
    • (2008) J Avian Biol , vol.39 , Issue.4 , pp. 438-445
    • Kimball, R.T.1    Braun, E.L.2
  • 34
    • 84865135840 scopus 로고    scopus 로고
    • Expression of ADAMTS-2,-3,-13, and-14 in culprit coronary lesions in patients with acute myocardial infarction or stable angina
    • 22205175 10.1007/s11239-011-0673-7
    • Lee CW, Hwang I, Park C-S, Lee H, Park D-W, Kang S-J, Lee S-W, Kim Y-H, Park S-W, Park S-J (2012) Expression of ADAMTS-2,-3,-13, and-14 in culprit coronary lesions in patients with acute myocardial infarction or stable angina. J Thromb Thrombolysis 33(4):362-370
    • (2012) J Thromb Thrombolysis , vol.33 , Issue.4 , pp. 362-370
    • Lee, C.W.1    Hwang, I.2    Park, C.-S.3    Lee, H.4    Park, D.-W.5    Kang, S.-J.6    Lee, S.-W.7    Kim, Y.-H.8    Park, S.-W.9    Park, S.-J.10
  • 36
    • 0037351987 scopus 로고    scopus 로고
    • Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization
    • 430292 12618365 10.1101/gr.1003303
    • Locke DP, Segraves R, Carbone L, Archidiacono N, Albertson DG, Pinkel D, Eichler EE (2003) Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Res 13(3):347-357
    • (2003) Genome Res , vol.13 , Issue.3 , pp. 347-357
    • Locke, D.P.1    Segraves, R.2    Carbone, L.3    Archidiacono, N.4    Albertson, D.G.5    Pinkel, D.6    Eichler, E.E.7
  • 37
    • 0031731487 scopus 로고    scopus 로고
    • Genomic disorders: Structural features of the genome can lead to DNA rearrangements and human disease traits
    • 9820031 10.1016/S0168-9525(98)01555-8
    • Lupski JR (1998) Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits. Trends Genet: TIG 14(10):417
    • (1998) Trends Genet: TIG , vol.14 , Issue.10 , pp. 417
    • Lupski, J.R.1
  • 38
    • 77951606872 scopus 로고    scopus 로고
    • Selected SALM (synaptic adhesion-like molecule) family proteins regulate synapse formation
    • 20410109 10.1523/JNEUROSCI.4839-09.2010
    • Mah W, Ko J, Nam J, Han K, Chung WS, Kim E (2010) Selected SALM (synaptic adhesion-like molecule) family proteins regulate synapse formation. J Neurosci 30(16):5559-5568
    • (2010) J Neurosci , vol.30 , Issue.16 , pp. 5559-5568
    • Mah, W.1    Ko, J.2    Nam, J.3    Han, K.4    Chung, W.S.5    Kim, E.6
  • 39
    • 33144469122 scopus 로고    scopus 로고
    • Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes: Accipitridae)
    • 10.1159/000089883
    • Nanda I, Karl E, Volobouev V, Griffin D, Schartl M, Schmid M (2006) Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes: Accipitridae). Cytogenetic Genome Res 112(3-4):286-295
    • (2006) Cytogenetic Genome Res , vol.112 , Issue.3-4 , pp. 286-295
    • Nanda, I.1    Karl, E.2    Volobouev, V.3    Griffin, D.4    Schartl, M.5    Schmid, M.6
  • 41
    • 39749124923 scopus 로고    scopus 로고
    • Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation
    • 10.1007/s10577-007-1210-6
    • Nishida C, Ishijima J, Kosaka A, Tanabe H, Habermann FA, Griffin DK, Matsuda Y (2008) Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation. Chromosom Res 16(1):171-181
    • (2008) Chromosom Res , vol.16 , Issue.1 , pp. 171-181
    • Nishida, C.1    Ishijima, J.2    Kosaka, A.3    Tanabe, H.4    Habermann, F.A.5    Griffin, D.K.6    Matsuda, Y.7
  • 42
    • 0003515251 scopus 로고
    • London: George Alien & Unwin Ltd. Berlin, Heidelberg and New York: Springer-Verlag
    • Ohno S (1970) Evolution by gene duplication. London: George Alien & Unwin Ltd. Berlin, Heidelberg and New York: Springer-Verlag
    • (1970) Evolution by Gene Duplication
    • Ohno, S.1
  • 43
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • 15475419 10.1093/biostatistics/kxh008
    • Olshen AB, Venkatraman E, Lucito R, Wigler M (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5(4):557-572
    • (2004) Biostatistics , vol.5 , Issue.4 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.2    Lucito, R.3    Wigler, M.4
  • 48
    • 0036245495 scopus 로고    scopus 로고
    • Segmental duplications and the evolution of the primate genome
    • 11823792 10.1038/nrg705
    • Samonte RV, Eichler EE (2002) Segmental duplications and the evolution of the primate genome. Nat Rev Genet 3(1):65-72
    • (2002) Nat Rev Genet , vol.3 , Issue.1 , pp. 65-72
    • Samonte, R.V.1    Eichler, E.E.2
  • 49
    • 20944440779 scopus 로고    scopus 로고
    • Second report on chicken genes and chromosomes 2005
    • 10.1159/000084205
    • Schmid M, Nanda I, Burt DW (2005) Second report on chicken genes and chromosomes 2005. Cytogenetic and Genome Res 109(4):415-479
    • (2005) Cytogenetic and Genome Res , vol.109 , Issue.4 , pp. 415-479
    • Schmid, M.1    Nanda, I.2    Burt, D.W.3
  • 50
    • 83655201252 scopus 로고    scopus 로고
    • Intrachromosomal rearrangements in avian genome evolution: Evidence for regions prone to breakpoints
    • 3238122 22045382 10.1038/hdy.2011.99
    • Skinner B, Griffin D (2011) Intrachromosomal rearrangements in avian genome evolution: evidence for regions prone to breakpoints. Heredity 108(1):37-41
    • (2011) Heredity , vol.108 , Issue.1 , pp. 37-41
    • Skinner, B.1    Griffin, D.2
  • 52
    • 57749170986 scopus 로고    scopus 로고
    • Copy number variation and schizophrenia
    • 2643970 18990708 10.1093/schbul/sbn147
    • St Clair D (2009) Copy number variation and schizophrenia. Schizophr Bull 35(1):9-12
    • (2009) Schizophr Bull , vol.35 , Issue.1 , pp. 9-12
    • St Clair, D.1
  • 53
    • 0036468807 scopus 로고    scopus 로고
    • Genome architecture, rearrangements and genomic disorders
    • 11818139 10.1016/S0168-9525(02)02592-1
    • Stankiewicz P, Lupski JR (2002) Genome architecture, rearrangements and genomic disorders. Trends Genet: TIG 18(2):74
    • (2002) Trends Genet: TIG , vol.18 , Issue.2 , pp. 74
    • Stankiewicz, P.1    Lupski, J.R.2
  • 55
    • 1542571921 scopus 로고    scopus 로고
    • Human mesotrypsin is a unique digestive protease specialized for the degradation of trypsin inhibitors
    • 1393292 14507909 10.1074/jbc.M310301200
    • Szmola R, Kukor Z, Sahin-Tóth M (2003) Human mesotrypsin is a unique digestive protease specialized for the degradation of trypsin inhibitors. J Biol Chem 278(49):48580-48589
    • (2003) J Biol Chem , vol.278 , Issue.49 , pp. 48580-48589
    • Szmola, R.1    Kukor, Z.2    Sahin-Tóth, M.3
  • 56
    • 77950660808 scopus 로고    scopus 로고
    • Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution
    • 2847753 20357050 10.1101/gr.103663.109
    • Völker M, Backström N, Skinner BM, Langley EJ, Bunzey SK, Ellegren H, Griffin DK (2010) Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution. Genome Res 20(4):503-511
    • (2010) Genome Res , vol.20 , Issue.4 , pp. 503-511
    • Völker, M.1    Backström, N.2    Skinner, B.M.3    Langley, E.J.4    Bunzey, S.K.5    Ellegren, H.6    Griffin, D.K.7
  • 57
    • 77953014301 scopus 로고    scopus 로고
    • An initial map of chromosomal segmental copy number variations in the chicken
    • 2996973 20525236 10.1186/1471-2164-11-351
    • Wang X, Nahashon S, Feaster TK, Bohannon-Stewart A, Adefope N (2010) An initial map of chromosomal segmental copy number variations in the chicken. BMC Genomics 11(1):351
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 351
    • Wang, X.1    Nahashon, S.2    Feaster, T.K.3    Bohannon-Stewart, A.4    Adefope, N.5
  • 58
    • 84862529082 scopus 로고    scopus 로고
    • A genome-wide detection of copy number variations using SNP genotyping arrays in swine
    • 3464621 22726314 10.1186/1471-2164-13-273
    • Wang J, Jiang J, Fu W, Jiang L, Ding X, Liu J-F, Zhang Q (2012) A genome-wide detection of copy number variations using SNP genotyping arrays in swine. BMC Genomics 13(1):273
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 273
    • Wang, J.1    Jiang, J.2    Fu, W.3    Jiang, L.4    Ding, X.5    Liu, J.-F.6    Zhang, Q.7
  • 60
    • 0028707914 scopus 로고
    • Drosophila in cancer research: The first fifty tumor suppressor genes
    • 7883789 10.1242/jcs.1994.Supplement-18.4
    • Watson KL, Justice RW, Bryant PJ (1994) Drosophila in cancer research: the first fifty tumor suppressor genes. J Cell Sci Suppl 18:19
    • (1994) J Cell Sci Suppl , vol.18 , pp. 19
    • Watson, K.L.1    Justice, R.W.2    Bryant, P.J.3


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