메뉴 건너뛰기




Volumn 108, Issue 1, 2012, Pages 37-41

Intrachromosomal rearrangements in avian genome evolution: Evidence for regions prone to breakpoints

Author keywords

avian; birds; breakpoint; chromosome; evolution

Indexed keywords

CHROMOSOME; EVOLUTIONARY THEORY; GAMEBIRD; GENOME; POULTRY; RECOMBINATION; SONGBIRD;

EID: 83655201252     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2011.99     Document Type: Article
Times cited : (78)

References (41)
  • 1
    • 45849108338 scopus 로고    scopus 로고
    • Hemiplasy: A newterm in the lexicon of phylogenetics
    • Avise J, Robinson T (2008). Hemiplasy: a newterm in the lexicon of phylogenetics. Syst Biol57: 503-507.
    • (2008) Syst Biol , vol.57 , pp. 503-507
    • Avise, J.1    Robinson, T.2
  • 2
    • 0036143403 scopus 로고    scopus 로고
    • Genome-scale evolution: Reconstructing gene orders in the ancestral species
    • Bourque G, Pevzner PA (2002). Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Res 12: 26-36. (Pubitemid 34065587)
    • (2002) Genome Research , vol.12 , Issue.1 , pp. 26-36
    • Bourque, G.1    Pevzner, P.A.2
  • 6
    • 4444302046 scopus 로고    scopus 로고
    • GenAlyzer: Interactive visualization of sequence similarities between entire genomes
    • DOI 10.1093/bioinformatics/bth161
    • Choudhuri JV, Schleiermacher C, Kurtz S, Giegerich R (2004). Gen Alyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 20: 1964-1965. (Pubitemid 39199060)
    • (2004) Bioinformatics , vol.20 , Issue.12 , pp. 1964-1965
    • Choudhuri, J.V.1    Schleiermacher, C.2    Kurtz, S.3    Giegerich, R.4
  • 7
    • 0034652798 scopus 로고    scopus 로고
    • HSA4 and GGA4: Remarkable conservation despite 300-Myr divergence
    • DOI 10.1006/geno.1999.6085
    • Chowdhary BP, Raudsepp T (2000). HSA4 and GGA4: remarkable conservation despite 300-Myrdivergence. Genomics64: 102-105. (Pubitemid 30165079)
    • (2000) Genomics , vol.64 , Issue.1 , pp. 102-105
    • Chowdhary, B.P.1    Raudsepp, T.2
  • 8
    • 0009519729 scopus 로고
    • Animal cytogenetics 4: Chordata 3; B, Aves
    • Berlin: Gebrfider Borntraeger
    • Christidis L (1990). Animal cytogenetics 4: Chordata 3; B, Aves. Animal Cytogenetics. Berlin: Gebrfider Borntraeger 116.
    • (1990) Animal Cytogenetics , vol.116
    • Christidis, L.1
  • 9
    • 77957903598 scopus 로고    scopus 로고
    • Multi- platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis
    • Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Ann Blomberg L et al. (2010). Multi- platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLo S Biol 8: e1000475.
    • (2010) PLo S Biol , vol.8
    • Dalloul, R.A.1    Long, J.A.2    Zimin, A.V.3    Aslam, L.4    Beal, K.5    Ann Blomberg, L.6
  • 11
    • 77954564025 scopus 로고    scopus 로고
    • Reciprocal chromosome painting between white hawk (Leucopternis albicollis) and chicken reveals extensive fusions and fissions during karyotype evolution of accipitridae (Aves, Falconiformes)
    • de Oliveira E, Tagliarini M, Rissino J, Pieczarka J, Nagamachi C, O'Brien P, et al. (2010) Reciprocal chromosome painting between white hawk (Leucopternis albicollis) and chicken reveals extensive fusions and fissions during karyotype evolution of accipitridae (Aves, Falconiformes). Chromosome Res, 18: 349-355.
    • (2010) Chromosome Res , vol.18 , pp. 349-355
    • De Oliveira, E.1    Tagliarini, M.2    Rissino, J.3    Pieczarka, J.4    Nagamachi, C.5    O'Brien, P.6
  • 12
    • 27944456069 scopus 로고    scopus 로고
    • Chromosome reshuffling in birds of prey: The karyotype of the world's largest eagle (Harpy eagle, Harpia harpyja) compared to that of the chicken (Gallus gallus)
    • DOI 10.1007/s00412-005-0009-5
    • de Oliveira EHC, Habermann FA, Lacerda O, Sbalqueiro IJ, Wienberg J, Müller S (2005). Chromosome reshuffling in birds of prey: the karyotype of the world's largest eagle (Harpy eagle, Harpia harpyja) compared to that of the chicken (Gallus gallus). Chromosoma 114: 338-343. (Pubitemid 41662803)
    • (2005) Chromosoma , vol.114 , Issue.5 , pp. 338-343
    • De Oliveira, E.H.C.1    Habermann, F.A.2    Lacerda, O.3    Sbalqueiro, I.J.4    Wienberg, J.5    Muller, S.6
  • 13
    • 19444385245 scopus 로고    scopus 로고
    • Non-random chromosome positioning in mammalian sperm nuclei, with migration of the sex chromosomes during late spermatogenesis
    • DOI 10.1242/jcs.02301
    • Foster HA, Abeydeera LR, Griffin DK, Bridger JM (2005). Non-random chromosome positioning in mammalian sperm nuclei, with migration of the sexchromosomes during latespermatogenesis. JCell Sci118: 1811-1820. (Pubitemid 40723826)
    • (2005) Journal of Cell Science , vol.118 , Issue.9 , pp. 1811-1820
    • Foster, H.A.1    Abeydeera, L.R.2    Griffin, D.K.3    Bridger, J.M.4
  • 14
    • 43249112744 scopus 로고    scopus 로고
    • Whole genome comparative studies between chicken and turkey and their implications for aviangenomeevolution
    • Griffin D, Robertson L, Tempest H, Vignal A, Fillon V, Crooijmans R et al. (2008). Whole genome comparative studies between chicken and turkey and their implications for aviangenomeevolution. BMCGenomics9: 168.
    • (2008) BMCGenomics , vol.9 , pp. 168
    • Griffin, D.1    Robertson, L.2    Tempest, H.3    Vignal, A.4    Fillon, V.5    Crooijmans, R.6
  • 15
    • 34248231212 scopus 로고    scopus 로고
    • The evolution of the avian genome as revealed by comparative molecular cytogenetics
    • DOI 10.1159/000103166
    • Griffin DK, Robertson LBW, Tempest HG, Skinner BM (2007). The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet Genome Res 117: 64-77. (Pubitemid 47202666)
    • (2007) Cytogenetic and Genome Research , vol.117 , Issue.1-4 , pp. 64-77
    • Griffin, D.K.1    Robertson, L.B.W.2    Tempest, H.G.3    Skinner, B.M.4
  • 17
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • Hi ll ier LD, Miller W, Birney E, Warren W, Hardison R, Ponting CP et al. (2004). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
    • (2004) Nature , vol.432 , pp. 695-716
    • Hillier, L.D.1    Miller, W.2    Birney, E.3    Warren, W.4    Hardison, R.5    Ponting, C.P.6
  • 18
    • 18544366082 scopus 로고    scopus 로고
    • Chromosomal polymorphism and comparative painting analysis in the zebra finch
    • DOI 10.1007/s10577-005-6602-x
    • Itoh Y, Arnold AP (2005). Chromosomal polymorphism and comparative painting analysis in the zebra finch. Chromosome Res 13: 47-56. (Pubitemid 40655461)
    • (2005) Chromosome Research , vol.13 , Issue.1 , pp. 47-56
    • Itoh, Y.1    Arnold, A.P.2
  • 19
    • 0016087667 scopus 로고
    • On some principles governing molecular evolution
    • Kimura M, Ohta T (1974). On some principles governing molecular evolution. Proc Natl Acad Sci USA 71: 2848-2852.
    • (1974) Proc Natl Acad Sci USA , vol.71 , pp. 2848-2852
    • Kimura, M.1    Ohta, T.2
  • 20
    • 66049138940 scopus 로고    scopus 로고
    • Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
    • Larkin DM, Pape G, Donthu R, Auvil L, Welge M, Lewin HA (2009). Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. Genome Res 19: 770-777.
    • (2009) Genome Res , vol.19 , pp. 770-777
    • Larkin, D.M.1    Pape, G.2    Donthu, R.3    Auvil, L.4    Welge, M.5    Lewin, H.A.6
  • 24
    • 34547641577 scopus 로고    scopus 로고
    • Chromosome repatterning in three representative parrots (Psittaciformes) inferred from comparative chromosome painting
    • DOI 10.1159/000103164
    • Nanda I, Karl E, Griffin DK, Schartl M, Schmid M (2007). Chromosome repatterning in three representative parrots (Psittaciformes) inferred from comparative chromosome painting. Cytogenet Genome Res 117: 43-53. (Pubitemid 47202664)
    • (2007) Cytogenetic and Genome Research , vol.117 , Issue.1-4 , pp. 43-53
    • Nanda, I.1    Karl, E.2    Griffin, D.K.3    Schartl, M.4    Schmid, M.5
  • 25
    • 62749186214 scopus 로고    scopus 로고
    • Avian comparative genomics: Reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes)\-An atypical species with low diploid number
    • Nie W, O'Brien P, Ng B, Fu B, Volobouev V, Carter N et al. (2009). Avian comparative genomics: reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes)\-An atypical species with low diploid number. Chromosome Res 117: 99-113.
    • (2009) Chromosome Res , vol.117 , pp. 99-113
    • Nie, W.1    O'Brien, P.2    Ng, B.3    Fu, B.4    Volobouev, V.5    Carter, N.6
  • 26
    • 39749124923 scopus 로고    scopus 로고
    • Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation
    • DOI 10.1007/s10577-007-1210-6
    • Nishida C, Ishijima J, Kosaka A, Tanabe H, Habermann FA, Griffin DK et al. (2008). Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation. Chromosome Res 16: 171-181. (Pubitemid 351294786)
    • (2008) Chromosome Research , vol.16 , Issue.1 , pp. 171-181
    • Nishida, C.1    Ishijima, J.2    Kosaka, A.3    Tanabe, H.4    Habermann, F.A.5    Griffin, D.K.6    Matsuda, Y.7
  • 27
    • 34548699933 scopus 로고    scopus 로고
    • The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds
    • DOI 10.1007/s10577-007-1157-7
    • Nishida-Umehara C, Tsuda Y, Ishijima J, Ando J, Fujiwara A, Matsuda Yet al. (2007). The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds. Chromosome Res 15: 721-734. (Pubitemid 47415797)
    • (2007) Chromosome Research , vol.15 , Issue.6 , pp. 721-734
    • Nishida-Umehara, C.1    Tsuda, Y.2    Ishijima, J.3    Ando, J.4    Fujiwara, A.5    Matsuda, Y.6    Griffin, D.K.7
  • 29
    • 14044258836 scopus 로고    scopus 로고
    • Centric fission\-simple and complex mechanisms
    • Perry J, Slater HR, Choo KHA (2004). Centric fission\-simple and complex mechanisms. Chromosome Res 12: 627-640.
    • (2004) Chromosome Res , vol.12 , pp. 627-640
    • Perry, J.1    Slater, H.R.2    Choo, K.H.A.3
  • 31
    • 0035400605 scopus 로고    scopus 로고
    • Chromosomal rearrangements and speciation
    • DOI 10.1016/S0169-5347(01)02187-5, PII S0169534701021875
    • Rieseberg LH (2001). Chromosomal rearrangements and speciation. Trends Ecol Evol (Amst) 16: 351-358. (Pubitemid 32525775)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.7 , pp. 351-358
    • Rieseberg, L.H.1
  • 32
    • 79956330054 scopus 로고    scopus 로고
    • Interpretation of karyotype evolution should consider chromosomestructuralconstraints
    • Schubert I, Lysak MA (2011). Interpretation of karyotype evolution should consider chromosomestructuralconstraints. Trends Genet27: 207-216.
    • (2011) Trends Genet , vol.27 , pp. 207-216
    • Schubert, I.1    Lysak, M.A.2
  • 33
    • 0343320348 scopus 로고    scopus 로고
    • Comparative painting reveals strong chromosome homology over 80 million years of bird evolution
    • DOI 10.1023/A:1009278914829
    • Shetty S, Griffin DK, Graves JA (1999). Comparative painting reveals strong chromosome homology over 80 million years of bird evolution. Chromosome Res 7: 289-295. (Pubitemid 29353704)
    • (1999) Chromosome Research , vol.7 , Issue.4 , pp. 289-295
    • Shetty, S.1    Griffin, D.K.2    Graves, J.A.M.3
  • 34
    • 1842757844 scopus 로고    scopus 로고
    • Karyotypic evolution in the Galliformes: An examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny
    • DOI 10.1159/000078570
    • Shibusawa M, Nishibori M, Nishida-Umehara C, Tsudzuki M, Masabanda J, Griffin DK et al. (2004a). Karyotypic evolution in the Galliformes: an examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny Cytogenet Genome Res 106: 111-119. (Pubitemid 38822789)
    • (2004) Cytogenetic and Genome Research , vol.106 , Issue.1 , pp. 111-119
    • Shibusawa, M.1    Nishibori, M.2    Nishida-Umehara, C.3    Tsudzuki, M.4    Masabanda, J.5    Griffin, D.K.6    Matsuda, Y.7
  • 35
    • 3042685229 scopus 로고    scopus 로고
    • A comparative karyological study of the blue-breasted quail (Coturnix chinensis, Phasianidae) and California quail (Callipepla californica, Odontophoridae)
    • DOI 10.1159/000078569
    • Shibusawa M, Nishida-Umehara C, Tsudzuki M, Masabanda J, Griffin DK, Matsuda Y (2004b). A comparative karyological study of the blue-breasted quail (Coturnix chi- nensis, Phasianidae) and California quail (Callipepla californica, Odontophoridae). Cytogenet Genome Res 106: 82-90. (Pubitemid 38822785)
    • (2004) Cytogenetic and Genome Research , vol.106 , Issue.1 , pp. 82-90
    • Shibusawa, M.1    Nishida-Umehara, C.2    Tsudzuki, M.3    Masabanda, J.4    Griffin, D.K.5    Matsuda, Y.6
  • 36
    • 69249212381 scopus 로고    scopus 로고
    • Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis
    • Skinner B, Robertson L, Tempest H, Langley E, Ioannou D, Fowler K et al. (2009a). Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis. BMC Genomics 10: 357.
    • (2009) BMC Genomics , vol.10 , pp. 357
    • Skinner, B.1    Robertson, L.2    Tempest, H.3    Langley, E.4    Ioannou, D.5    Fowler, K.6
  • 37
    • 73349101507 scopus 로고    scopus 로고
    • An Appraisal of nuclear organisation in interphase embryonic fibroblasts of chicken, turkey and duck
    • Skinner BM, Volker M, Ellis M, Griffin DK (2009b). An Appraisal of nuclear organisation in interphase embryonic fibroblasts of chicken, turkey and duck. Cytogenet Genome Res 126:156-164.
    • (2009) Cytogenet Genome Res , vol.126 , pp. 156-164
    • Skinner, B.M.1    Volker, M.2    Ellis, M.3    Griffin, D.K.4
  • 39
    • 77950660808 scopus 로고    scopus 로고
    • Copy number variation, chromosome rearrangement, and their association with recom- binationduringavianevolution
    • Volker M, Backstrom N, Skinner BM, Langley EJ, Bunzey SK, Ellegren H et al. (2010). Copy number variation, chromosome rearrangement, and their association with recom- binationduringavianevolution. Genome Res20: 503-511.
    • (2010) Genome Res , vol.20 , pp. 503-511
    • Volker, M.1    Backstrom, N.2    Skinner, B.M.3    Langley, E.J.4    Bunzey, S.K.5    Ellegren, H.6
  • 41
    • 8644290092 scopus 로고    scopus 로고
    • The evolution of eutherian chromosomes
    • DOI 10.1016/j.gde.2004.10.001, PII S0959437X04001583
    • Wienberg J (2004). The evolution of eutherian chromosomes. Curr Opin Genet Dev 14: 657-666. (Pubitemid 39505371)
    • (2004) Current Opinion in Genetics and Development , vol.14 , Issue.6 , pp. 657-666
    • Wienberg, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.