-
2
-
-
79251586250
-
Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation
-
G.M. Clore Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation Protein Sci. 20 2011 229 246
-
(2011)
Protein Sci.
, vol.20
, pp. 229-246
-
-
Clore, G.M.1
-
3
-
-
18744361937
-
Reconstruction of orientations of a moving protein domain from paramagnetic data
-
R.J. Gardner, M. Longinetti, and L. Sgheri Reconstruction of orientations of a moving protein domain from paramagnetic data Inverse Probl. 21 2005 879 898
-
(2005)
Inverse Probl.
, vol.21
, pp. 879-898
-
-
Gardner, R.J.1
Longinetti, M.2
Sgheri, L.3
-
4
-
-
33746283923
-
Efficient determination of the most favoured orientations of protein domains from paramagnetic NMR data
-
M. Longinetti, C. Luchinat, G. Parigi, and L. Sgheri Efficient determination of the most favoured orientations of protein domains from paramagnetic NMR data Inverse Probl. 22 2006 1485 1502
-
(2006)
Inverse Probl.
, vol.22
, pp. 1485-1502
-
-
Longinetti, M.1
Luchinat, C.2
Parigi, G.3
Sgheri, L.4
-
5
-
-
74849106907
-
Visualization of the encounter ensemble of the transient electron transfer complex of cytochrome c and cytochrome c peroxidase
-
Q. Bashir, A.N. Volkov, G.M. Ullmann, and M. Ubbink Visualization of the encounter ensemble of the transient electron transfer complex of cytochrome c and cytochrome c peroxidase J. Am. Chem. Soc. 132 2010 241 247
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 241-247
-
-
Bashir, Q.1
Volkov, A.N.2
Ullmann, G.M.3
Ubbink, M.4
-
6
-
-
78651327177
-
Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy
-
A.N. Volkov, M. Ubbink, and N.A. van Nuland Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy J. Biomol. NMR 48 2010 225 236
-
(2010)
J. Biomol. NMR
, vol.48
, pp. 225-236
-
-
Volkov, A.N.1
Ubbink, M.2
Van Nuland, N.A.3
-
7
-
-
76549128494
-
Mechanistic details of a protein-protein association pathway revealed by paramagnetic relaxation enhancement titration measurements
-
N.L. Fawzi, M. Doucleff, J.Y. Suh, and G.M. Clore Mechanistic details of a protein-protein association pathway revealed by paramagnetic relaxation enhancement titration measurements Proc. Natl. Acad. Sci. U.S.A. 107 2010 1379 1384
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 1379-1384
-
-
Fawzi, N.L.1
Doucleff, M.2
Suh, J.Y.3
Clore, G.M.4
-
8
-
-
39049109333
-
Dynamics in the transient complex of plastocyanin-cytochrome f from Prochlorothrix hollandica
-
R. Hulsker, M.V. Baranova, G.S. Bullerjahn, and M. Ubbink Dynamics in the transient complex of plastocyanin-cytochrome f from Prochlorothrix hollandica J. Am. Chem. Soc. 130 2008 1985 1991
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 1985-1991
-
-
Hulsker, R.1
Baranova, M.V.2
Bullerjahn, G.S.3
Ubbink, M.4
-
9
-
-
43949086199
-
Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy
-
X. Xu, W. Reinle, F. Hannemann, P.V. Konarev, D.I. Svergun, R. Bernhardt, and M. Ubbink Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy J. Am. Chem. Soc. 130 2008 6395 6403
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 6395-6403
-
-
Xu, X.1
Reinle, W.2
Hannemann, F.3
Konarev, P.V.4
Svergun, D.I.5
Bernhardt, R.6
Ubbink, M.7
-
13
-
-
34447101383
-
On the dynamic nature of the transition state for protein-protein association as determined by double-mutant cycle analysis and simulation
-
M. Harel, M. Cohen, and G. Schreiber On the dynamic nature of the transition state for protein-protein association as determined by double-mutant cycle analysis and simulation J. Mol. Biol. 371 2007 180 196
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 180-196
-
-
Harel, M.1
Cohen, M.2
Schreiber, G.3
-
14
-
-
51349101286
-
Replica exchange simulations of transient encounter complexes in protein-protein association
-
Y.C. Kim, C. Tang, G.M. Clore, and G. Hummer Replica exchange simulations of transient encounter complexes in protein-protein association Proc. Natl. Acad. Sci. U.S.A. 105 2008 12855 12860
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 12855-12860
-
-
Kim, Y.C.1
Tang, C.2
Clore, G.M.3
Hummer, G.4
-
15
-
-
34250838027
-
Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR
-
A.N. Volkov, J.A. Worrall, E. Holtzmann, and M. Ubbink Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR Proc. Natl. Acad. Sci. U.S.A. 103 2006 18945 18950
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 18945-18950
-
-
Volkov, A.N.1
Worrall, J.A.2
Holtzmann, E.3
Ubbink, M.4
-
16
-
-
33751086423
-
Visualization of transient encounter complexes in protein-protein association
-
C. Tang, J. Iwahara, and G.M. Clore Visualization of transient encounter complexes in protein-protein association Nature 444 2006 383 386
-
(2006)
Nature
, vol.444
, pp. 383-386
-
-
Tang, C.1
Iwahara, J.2
Clore, G.M.3
-
17
-
-
84862303541
-
Paramagnetic relaxation enhancement for the characterization of the conformational heterogeneity in two-domain proteins
-
I. Bertini, C. Luchinat, M. Nagulapalli, G. Parigi, and E. Ravera Paramagnetic relaxation enhancement for the characterization of the conformational heterogeneity in two-domain proteins Phys. Chem. Chem. Phys. 14 2012 9149 9156
-
(2012)
Phys. Chem. Chem. Phys.
, vol.14
, pp. 9149-9156
-
-
Bertini, I.1
Luchinat, C.2
Nagulapalli, M.3
Parigi, G.4
Ravera, E.5
-
18
-
-
84857046973
-
Maximum occurrence analysis of protein conformations for different distributions of paramagnetic metal ions within flexible two-domain proteins
-
C. Luchinat, M. Nagulapalli, G. Parigi, and L. Sgheri Maximum occurrence analysis of protein conformations for different distributions of paramagnetic metal ions within flexible two-domain proteins J. Magn. Reson. 215 2012 85 93
-
(2012)
J. Magn. Reson.
, vol.215
, pp. 85-93
-
-
Luchinat, C.1
Nagulapalli, M.2
Parigi, G.3
Sgheri, L.4
-
19
-
-
80755176789
-
Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains
-
S. Dasgupta et al. Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains J. Biomol. NMR 51 2011 253 263
-
(2011)
J. Biomol. NMR
, vol.51
, pp. 253-263
-
-
Dasgupta, S.1
-
20
-
-
77957114696
-
Conformational space of flexible biological macromolecules from average data
-
I. Bertini, A. Giachetti, C. Luchinat, G. Parigi, M.V. Petoukhov, R. Pierattelli, E. Ravera, and D.I. Svergun Conformational space of flexible biological macromolecules from average data J. Am. Chem. Soc. 132 2010 13553 13558
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 13553-13558
-
-
Bertini, I.1
Giachetti, A.2
Luchinat, C.3
Parigi, G.4
Petoukhov, M.V.5
Pierattelli, R.6
Ravera, E.7
Svergun, D.I.8
-
21
-
-
35548988910
-
Paramagnetism-based NMR restraints provide maximum allowed probabilities for the different conformations of partially independent protein domains
-
I. Bertini, Y.K. Gupta, C. Luchinat, G. Parigi, M. Peana, L. Sgheri, and J. Yuan Paramagnetism-based NMR restraints provide maximum allowed probabilities for the different conformations of partially independent protein domains J. Am. Chem. Soc. 129 2007 12786 12794
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 12786-12794
-
-
Bertini, I.1
Gupta, Y.K.2
Luchinat, C.3
Parigi, G.4
Peana, M.5
Sgheri, L.6
Yuan, J.7
-
22
-
-
79955054283
-
Dynamics in electron transfer protein complexes
-
Q. Bashir, S. Scanu, and M. Ubbink Dynamics in electron transfer protein complexes FEBS J. 278 2011 1391 1400
-
(2011)
FEBS J.
, vol.278
, pp. 1391-1400
-
-
Bashir, Q.1
Scanu, S.2
Ubbink, M.3
-
23
-
-
77955787224
-
Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations
-
A.N. Volkov, Q. Bashir, J.A. Worrall, G.M. Ullmann, and M. Ubbink Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations J. Am. Chem. Soc. 132 2010 11487 11495
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 11487-11495
-
-
Volkov, A.N.1
Bashir, Q.2
Worrall, J.A.3
Ullmann, G.M.4
Ubbink, M.5
-
24
-
-
0027056273
-
Crystal-structure of a complex between electron-transfer partners, cytochrome-c peroxidase and cytochrome-c
-
H. Pelletier, and J. Kraut Crystal-structure of a complex between electron-transfer partners, cytochrome-c peroxidase and cytochrome-c Science 258 1992 1748 1755
-
(1992)
Science
, vol.258
, pp. 1748-1755
-
-
Pelletier, H.1
Kraut, J.2
-
25
-
-
0024040620
-
Brownian dynamics of cytochrome c and cytochrome c peroxidase association
-
S.H. Northrup, J.O. Boles, and J.C. Reynolds Brownian dynamics of cytochrome c and cytochrome c peroxidase association Science 241 1988 67 70
-
(1988)
Science
, vol.241
, pp. 67-70
-
-
Northrup, S.H.1
Boles, J.O.2
Reynolds, J.C.3
-
26
-
-
0035830963
-
Protein-protein association: Investigation of factors influencing association rates by brownian dynamics simulations
-
R.R. Gabdoulline, and R.C. Wade Protein-protein association: investigation of factors influencing association rates by brownian dynamics simulations J. Mol. Biol. 306 2001 1139 1155
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 1139-1155
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
27
-
-
0034130258
-
Yeast cytochrome c peroxidase expression in Escherichia coli and rapid isolation of various highly pure holoenzymes
-
J.G. Teske, M.I. Savenkova, J.M. Mauro, J.E. Erman, and J.D. Satterlee Yeast cytochrome c peroxidase expression in Escherichia coli and rapid isolation of various highly pure holoenzymes Protein Expr. Purif. 19 2000 139 147
-
(2000)
Protein Expr. Purif.
, vol.19
, pp. 139-147
-
-
Teske, J.G.1
Savenkova, M.I.2
Mauro, J.M.3
Erman, J.E.4
Satterlee, J.D.5
-
28
-
-
0025863971
-
Amino-acid substitutions at tryptophan-51 of cytochrome-c peroxidase - Effects on coordination, species preference for cytochrome-c, and electron-transfer
-
D.B. Goodin, M.G. Davidson, J.A. Roe, A.G. Mauk, and M. Smith Amino-acid substitutions at tryptophan-51 of cytochrome-c peroxidase - effects on coordination, species preference for cytochrome-c, and electron-transfer Biochemistry 30 1991 4953 4962
-
(1991)
Biochemistry
, vol.30
, pp. 4953-4962
-
-
Goodin, D.B.1
Davidson, M.G.2
Roe, J.A.3
Mauk, A.G.4
Smith, M.5
-
29
-
-
0025359972
-
PH-dependent spectral and kinetic properties of cytochrome c peroxidase: Comparison of freshly isolated and stored enzyme
-
L.B. Vitello, M. Huang, and J.E. Erman PH-dependent spectral and kinetic properties of cytochrome c peroxidase: comparison of freshly isolated and stored enzyme Biochemistry 29 1990 4283 4288
-
(1990)
Biochemistry
, vol.29
, pp. 4283-4288
-
-
Vitello, L.B.1
Huang, M.2
Erman, J.E.3
-
30
-
-
0032574759
-
Bacterial expression of a mitochondrial cytochrome c. Trimethylation of lys72 in yeast iso-1-cytochrome c and the alkaline conformational transition
-
W.B. Pollock, F.I. Rosell, M.B. Twitchett, M.E. Dumont, and A.G. Mauk Bacterial expression of a mitochondrial cytochrome c. Trimethylation of lys72 in yeast iso-1-cytochrome c and the alkaline conformational transition Biochemistry 37 1998 6124 6131
-
(1998)
Biochemistry
, vol.37
, pp. 6124-6131
-
-
Pollock, W.B.1
Rosell, F.I.2
Twitchett, M.B.3
Dumont, M.E.4
Mauk, A.G.5
-
32
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
W.F. Vranken et al. The CCPN data model for NMR spectroscopy: development of a software pipeline Proteins 59 2005 687 696
-
(2005)
Proteins
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
-
33
-
-
34250159870
-
A set of BEST triple-resonance experiments for time-optimized protein resonance assignment
-
E. Lescop, P. Schanda, and B. Brutscher A set of BEST triple-resonance experiments for time-optimized protein resonance assignment J. Magn. Reson. 187 2007 163 169
-
(2007)
J. Magn. Reson.
, vol.187
, pp. 163-169
-
-
Lescop, E.1
Schanda, P.2
Brutscher, B.3
-
34
-
-
0029881450
-
The solution structure of HIV-1 Nef reveals an unexpected fold and permits delineation of the binding surface for the SH3 domain of Hck tyrosine protein kinase
-
S. Grzesiek et al. The solution structure of HIV-1 Nef reveals an unexpected fold and permits delineation of the binding surface for the SH3 domain of Hck tyrosine protein kinase Nat. Struct. Biol. 3 1996 340 345
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 340-345
-
-
Grzesiek, S.1
-
35
-
-
0029995705
-
The role of acidic residues of plastocyanin in its interaction with cytochrome f
-
A. Kannt, S. Young, and D.S. Bendall The role of acidic residues of plastocyanin in its interaction with cytochrome f Biochim. Biophys. Acta Bioenerg. 1277 1996 115 126
-
(1996)
Biochim. Biophys. Acta Bioenerg.
, vol.1277
, pp. 115-126
-
-
Kannt, A.1
Young, S.2
Bendall, D.S.3
-
36
-
-
0034625121
-
Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear overhauser effect data
-
J.L. Battiste, and G. Wagner Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear overhauser effect data Biochemistry 39 2000 5355 5365
-
(2000)
Biochemistry
, vol.39
, pp. 5355-5365
-
-
Battiste, J.L.1
Wagner, G.2
-
37
-
-
84883559149
-
Paramagnetic properties of the low- and high-spin states of yeast cytochrome c peroxidase
-
S. Vanwetswinkel, N.A.J. van Nuland, and A.N. Volkov Paramagnetic properties of the low- and high-spin states of yeast cytochrome c peroxidase J. Biomol. NMR 57 2013 21 26
-
(2013)
J. Biomol. NMR
, vol.57
, pp. 21-26
-
-
Vanwetswinkel, S.1
Van Nuland, N.A.J.2
Volkov, A.N.3
-
38
-
-
84875802862
-
Expression, purification, characterization, and solution nuclear magnetic resonance study of highly deuterated yeast cytochrome c peroxidase with enhanced solubility
-
A.N. Volkov, A. Wohlkonig, S.H. Soror, and N.A.J. van Nuland Expression, purification, characterization, and solution nuclear magnetic resonance study of highly deuterated yeast cytochrome c peroxidase with enhanced solubility Biochemistry 52 2013 2165 2175
-
(2013)
Biochemistry
, vol.52
, pp. 2165-2175
-
-
Volkov, A.N.1
Wohlkonig, A.2
Soror, S.H.3
Van Nuland, N.A.J.4
-
39
-
-
58149127166
-
Binding hot spot in the weak protein complex of physiological redox partners yeast cytochrome c and cytochrome c peroxidase
-
A.N. Volkov, O. Bashir, J.A.R. Worrall, and M. Ubbink Binding hot spot in the weak protein complex of physiological redox partners yeast cytochrome c and cytochrome c peroxidase J. Mol. Biol. 385 2009 1003 1013
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 1003-1013
-
-
Volkov, A.N.1
Bashir, O.2
Worrall, J.A.R.3
Ubbink, M.4
-
41
-
-
84880132104
-
Solution NMR study of the yeast cytochrome c peroxidase: Cytochrome c interaction
-
A.N. Volkov, and N.A. van Nuland Solution NMR study of the yeast cytochrome c peroxidase: cytochrome c interaction J. Biomol. NMR 56 2008 255 263
-
(2008)
J. Biomol. NMR
, vol.56
, pp. 255-263
-
-
Volkov, A.N.1
Van Nuland, N.A.2
-
42
-
-
80052730354
-
The complex of cytochrome c and cytochrome c peroxidase: The end of the road?
-
A.N. Volkov, P. Nicholls, and J.A.R. Worrall The complex of cytochrome c and cytochrome c peroxidase: The end of the road? Biochim. Biophys. Acta Bioenerg. 1807 2011 1482 1503
-
(2011)
Biochim. Biophys. Acta Bioenerg.
, vol.1807
, pp. 1482-1503
-
-
Volkov, A.N.1
Nicholls, P.2
Worrall, J.A.R.3
|