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Volumn 32, Issue 5, 2014, Pages 465-472

Proteome labeling and protein identification in specific tissues and at specific developmental stages in an animal

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ANIMALS; CELLS; CYCLOADDITION; CYTOLOGY; HISTOLOGY; PROTEINS; TISSUE;

EID: 84900339887     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.2860     Document Type: Article
Times cited : (155)

References (49)
  • 1
    • 84878944333 scopus 로고    scopus 로고
    • Receptor tyrosine kinases in Drosophila development
    • doi:10.1101/cshperspect.a009050
    • Sopko, R. & Perrimon, N. Receptor tyrosine kinases in Drosophila development. Cold Spring Harb. Perspect. Biol. doi:10.1101/cshperspect.a009050 (2013).
    • (2013) Cold Spring Harb. Perspect. Biol.
    • Sopko, R.1    Perrimon, N.2
  • 2
    • 84856423273 scopus 로고    scopus 로고
    • Seeing the light: Photobehavior in fruit fy larvae
    • Keene, A.C. & Sprecher, S.G. Seeing the light: photobehavior in fruit fy larvae. Trends Neurosci. 35, 104-110 (2012).
    • (2012) Trends Neurosci. , vol.35 , pp. 104-110
    • Keene, A.C.1    Sprecher, S.G.2
  • 3
    • 84870221288 scopus 로고    scopus 로고
    • The apical polarity protein network in Drosophila epithelial cells: Regulation of polarity, junctions, morphogenesis, cell growth, and survival
    • Tepass, U. The apical polarity protein network in Drosophila epithelial cells: regulation of polarity, junctions, morphogenesis, cell growth, and survival. Annu. Rev. Cell Dev. Biol. 28, 655-685 (2012).
    • (2012) Annu. Rev. Cell Dev. Biol. , vol.28 , pp. 655-685
    • Tepass, U.1
  • 4
    • 84856978083 scopus 로고    scopus 로고
    • Ode to the mushroom bodies
    • Dubnau, J. Ode to the mushroom bodies. Science 335, 664-665 (2012).
    • (2012) Science , vol.335 , pp. 664-665
    • Dubnau, J.1
  • 5
    • 80053013322 scopus 로고    scopus 로고
    • Noncanonical amino acids in the interrogation of cellular protein synthesis
    • Ngo, J.T. & Tirrell, D.A. Noncanonical amino acids in the interrogation of cellular protein synthesis. Acc. Chem. Res. 44, 677-685 (2011).
    • (2011) Acc. Chem. Res. , vol.44 , pp. 677-685
    • Ngo, J.T.1    Tirrell, D.A.2
  • 6
    • 84875755186 scopus 로고    scopus 로고
    • QuaNCAT: Quantitating proteome dynamics in primary cells
    • Howden, A.J. et al. QuaNCAT: quantitating proteome dynamics in primary cells. Nat. Methods 10, 343-346 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 343-346
    • Howden, A.J.1
  • 7
    • 70349327398 scopus 로고    scopus 로고
    • Cell-selective metabolic labeling of proteins
    • Ngo, J.T. et al. Cell-selective metabolic labeling of proteins. Nat. Chem. Biol. 5, 715-717 (2009).
    • (2009) Nat. Chem. Biol. , vol.5 , pp. 715-717
    • Ngo, J.T.1
  • 8
    • 84861361764 scopus 로고    scopus 로고
    • Two-strain, cell-selective protein labeling in mixed bacterial cultures
    • Truong, F., Yoo, T.H., Lampo, T.J. & Tirrell, D.A. Two-strain, cell-selective protein labeling in mixed bacterial cultures. J. Am. Chem. Soc. 134, 8551-8556 (2012).
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 8551-8556
    • Truong, F.1    Yoo, T.H.2    Lampo, T.J.3    Tirrell, D.A.4
  • 9
    • 84875523875 scopus 로고    scopus 로고
    • Mutant methionyl-tRNA synthetase from bacteria enables site-selective N-terminal labeling of proteins expressed in mammalian cells
    • Ngo, J.T., Schuman, E.M. & Tirrell, D.A. Mutant methionyl-tRNA synthetase from bacteria enables site-selective N-terminal labeling of proteins expressed in mammalian cells. Proc. Natl. Acad. Sci. USA 110, 4992-4997 (2013).
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 4992-4997
    • Ngo, J.T.1    Schuman, E.M.2    Tirrell, D.A.3
  • 10
    • 84856064801 scopus 로고    scopus 로고
    • Non-canonical amino acid labeling in vivo to visualize and affnity purify newly synthesized proteins in larval zebrafsh
    • Hinz, F.I., Dieterich, D.C., Tirrell, D.A. & Schuman, E.M. Non-canonical amino acid labeling in vivo to visualize and affnity purify newly synthesized proteins in larval zebrafsh. ACS Chem. Neurosci. 3, 40-49 (2012).
    • (2012) ACS Chem. Neurosci. , vol.3 , pp. 40-49
    • Hinz, F.I.1    Dieterich, D.C.2    Tirrell, D.A.3    Schuman, E.M.4
  • 11
    • 33745892390 scopus 로고    scopus 로고
    • Discovery of aminoacyl-tRNA synthetase activity through cell-surface display of noncanonical amino acids
    • Link, A.J. et al. Discovery of aminoacyl-tRNA synthetase activity through cell-surface display of noncanonical amino acids. Proc. Natl. Acad. Sci. USA 103, 10180-10185 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 10180-10185
    • Link, A.J.1
  • 12
    • 84860211688 scopus 로고    scopus 로고
    • Reprogramming the genetic code
    • Chin, J.W. Reprogramming the genetic code. Science 336, 428-429 (2012).
    • (2012) Science , vol.336 , pp. 428-429
    • Chin, J.W.1
  • 13
    • 84857451064 scopus 로고    scopus 로고
    • Designer proteins: Applications of genetic code expansion in cell biology
    • Davis, L. & Chin, J.W. Designer proteins: applications of genetic code expansion in cell biology. Nat. Rev. Mol. Cell Biol. 13, 168-182 (2012).
    • (2012) Nat. Rev. Mol. Cell Biol. , vol.13 , pp. 168-182
    • Davis, L.1    Chin, J.W.2
  • 14
    • 40949099577 scopus 로고    scopus 로고
    • Genetically encoding N(epsilon)-acetyllysine in recombinant proteins
    • Neumann, H., Peak-Chew, S.Y. & Chin, J.W. Genetically encoding N(epsilon)-acetyllysine in recombinant proteins. Nat. Chem. Biol. 4, 232-234 (2008).
    • (2008) Nat. Chem. Biol. , vol.4 , pp. 232-234
    • Neumann, H.1    Peak-Chew, S.Y.2    Chin, J.W.3
  • 15
    • 77958464370 scopus 로고    scopus 로고
    • Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair
    • Hancock, S.M., Uprety, R., Deiters, A. & Chin, J.W. Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair. J. Am. Chem. Soc. 132, 14819-14824 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 14819-14824
    • Hancock, S.M.1    Uprety, R.2    Deiters, A.3    Chin, J.W.4
  • 16
    • 44149083513 scopus 로고    scopus 로고
    • Adding l-lysine derivatives to the genetic code of mammalian cells with engineered pyrrolysyl-tRNA synthetases
    • Mukai, T. et al. Adding l-lysine derivatives to the genetic code of mammalian cells with engineered pyrrolysyl-tRNA synthetases. Biochem. Biophys. Res. Commun. 371, 818-822 (2008).
    • (2008) Biochem. Biophys. Res. Commun. , vol.371 , pp. 818-822
    • Mukai, T.1
  • 17
    • 70349783657 scopus 로고    scopus 로고
    • A facile system for encoding unnatural amino acids in mammalian cells
    • Chen, P.R. et al. A facile system for encoding unnatural amino acids in mammalian cells. Angew. Chem. Int. Ed. 48, 4052-4055 (2009).
    • (2009) Angew. Chem. Int. Ed. , vol.48 , pp. 4052-4055
    • Chen, P.R.1
  • 18
    • 77950279568 scopus 로고    scopus 로고
    • Genetically encoded photocontrol of protein localization in mammalian cells
    • Gautier, A. et al. Genetically encoded photocontrol of protein localization in mammalian cells. J. Am. Chem. Soc. 132, 4086-4088 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 4086-4088
    • Gautier, A.1
  • 19
    • 80052570495 scopus 로고    scopus 로고
    • Expanding the genetic code of an animal
    • Greiss, S. & Chin, J.W. Expanding the genetic code of an animal. J. Am. Chem. Soc. 133, 14196-14199 (2011).
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 14196-14199
    • Greiss, S.1    Chin, J.W.2
  • 21
    • 53849105464 scopus 로고    scopus 로고
    • Tetrazine ligation: Fast bioconjugation based on inverse-electron-demand Diels-Alder reactivity
    • Blackman, M.L., Royzen, M. & Fox, J.M. Tetrazine ligation: fast bioconjugation based on inverse-electron-demand Diels-Alder reactivity. J. Am. Chem. Soc. 130, 13518-13519 (2008).
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 13518-13519
    • Blackman, M.L.1    Royzen, M.2    Fox, J.M.3
  • 22
    • 84864202913 scopus 로고    scopus 로고
    • Live-cell imaging of cyclopropene tags with fuorogenic tetrazine cycloadditions
    • Yang, J., Šečkute, J., Cole, C.M. & Devaraj, N.K. Live-cell imaging of cyclopropene tags with fuorogenic tetrazine cycloadditions. Angew. Chem. Int. Engl.Ed. 51, 7476-7479 (2012).
    • (2012) Angew. Chem. Int. Engl.Ed. , vol.51 , pp. 7476-7479
    • Yang, J.1    Šečkute, J.2    Cole, C.M.3    Devaraj, N.K.4
  • 23
    • 84872510474 scopus 로고    scopus 로고
    • Fluorescent live-cell imaging of metabolically incorporated unnatural cyclopropene-mannosamine derivatives
    • Cole, C.M., Yang, J., Šečkute, J. & Devaraj, N.K. Fluorescent live-cell imaging of metabolically incorporated unnatural cyclopropene-mannosamine derivatives. ChemBioChem 14, 205-208 (2013).
    • (2013) ChemBioChem , vol.14 , pp. 205-208
    • Cole, C.M.1    Yang, J.2    Šečkute, J.3    Devaraj, N.K.4
  • 25
    • 80053031240 scopus 로고    scopus 로고
    • Biomedical applications of tetrazine cycloadditions
    • Devaraj, N.K. & Weissleder, R. Biomedical applications of tetrazine cycloadditions. Acc. Chem. Res. 44, 816-827 (2011).
    • (2011) Acc. Chem. Res. , vol.44 , pp. 816-827
    • Devaraj, N.K.1    Weissleder, R.2
  • 26
    • 84857445877 scopus 로고    scopus 로고
    • Genetically encoded norbornene directs site-specifc cellular protein labelling via a rapid bioorthogonal reaction
    • Lang, K. et al. Genetically encoded norbornene directs site-specifc cellular protein labelling via a rapid bioorthogonal reaction. Nat. Chem. 4, 298-304 (2012).
    • (2012) Nat. Chem. , vol.4 , pp. 298-304
    • Lang, K.1
  • 27
    • 84863443015 scopus 로고    scopus 로고
    • Genetic encoding of bicyclononynes and trans-cyclooctenes for site-specifc protein labeling in vitro and in live mammalian cells via rapid fuorogenic Diels-Alder reactions
    • Lang, K. et al. Genetic encoding of bicyclononynes and trans-cyclooctenes for site-specifc protein labeling in vitro and in live mammalian cells via rapid fuorogenic Diels-Alder reactions. J. Am. Chem. Soc. 134, 10317-10320 (2012).
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 10317-10320
    • Lang, K.1
  • 28
    • 84866444197 scopus 로고    scopus 로고
    • Genetic encoding of a bicyclo[6.1.0]nonyne-charged amino acid enables fast cellular protein imaging by metal-free ligation
    • Borrmann, A. et al. Genetic encoding of a bicyclo[6.1.0]nonyne-charged amino acid enables fast cellular protein imaging by metal-free ligation. ChemBioChem 13, 2094-2099 (2012).
    • (2012) ChemBioChem , vol.13 , pp. 2094-2099
    • Borrmann, A.1
  • 29
    • 84859970111 scopus 로고    scopus 로고
    • Amino acids for Diels-Alder reactions in living cells
    • Plass, T. et al. Amino acids for Diels-Alder reactions in living cells. Angew. Chem. Int. Ed. Engl. 51, 4166-4170 (2012).
    • (2012) Angew. Chem. Int. Ed. Engl. , vol.51 , pp. 4166-4170
    • Plass, T.1
  • 30
    • 84856873462 scopus 로고    scopus 로고
    • Genetically encoded tetrazine amino acid directs rapid site-specifc in vivo bioorthogonal ligation with trans-cyclooctenes
    • Seitchik, J.L. et al. Genetically encoded tetrazine amino acid directs rapid site-specifc in vivo bioorthogonal ligation with trans-cyclooctenes. J. Am. Chem. Soc. 134, 2898-2901 (2012).
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 2898-2901
    • Seitchik, J.L.1
  • 31
    • 67649625295 scopus 로고    scopus 로고
    • Genetic encoding and labeling of aliphatic azides and alkynes in recombinant proteins via a pyrrolysyl-tRNA synthetase/tRNACUA pair and click chemistry
    • Nguyen, D.P. et al. Genetic encoding and labeling of aliphatic azides and alkynes in recombinant proteins via a pyrrolysyl-tRNA synthetase/tRNACUA pair and click chemistry. J. Am. Chem. Soc. 131, 8720-8721 (2009).
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 8720-8721
    • Nguyen, D.P.1
  • 32
    • 84867527159 scopus 로고    scopus 로고
    • Genetically encoded cyclopropene directs rapid, photoclick-chemistry- mediated protein labeling in mammalian cells
    • Yu, Z., Pan, Y., Wang, Z., Wang, J. & Lin, Q. Genetically encoded cyclopropene directs rapid, photoclick-chemistry-mediated protein labeling in mammalian cells. Angew. Chem. Int. Ed. Engl. 51, 10600-10604 (2012).
    • (2012) Angew. Chem. Int. Ed. Engl. , vol.51 , pp. 10600-10604
    • Yu, Z.1    Pan, Y.2    Wang, Z.3    Wang, J.4    Lin, Q.5
  • 33
    • 77956903406 scopus 로고    scopus 로고
    • Engineered diubiquitin synthesis reveals Lys29-isopeptide specifcity of an OTU deubiquitinase
    • Virdee, S., Ye, Y., Nguyen, D.P., Komander, D. & Chin, J.W. Engineered diubiquitin synthesis reveals Lys29-isopeptide specifcity of an OTU deubiquitinase. Nat. Chem. Biol. 6, 750-757 (2010).
    • (2010) Nat. Chem. Biol. , vol.6 , pp. 750-757
    • Virdee, S.1    Ye, Y.2    Nguyen, D.P.3    Komander, D.4    Chin, J.W.5
  • 34
    • 33847639279 scopus 로고    scopus 로고
    • Pyrrolysine is not hardwired for cotranslational insertion at UAG codons
    • Ambrogelly, A. et al. Pyrrolysine is not hardwired for cotranslational insertion at UAG codons. Proc. Natl. Acad. Sci. USA 104, 3141-3146 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 3141-3146
    • Ambrogelly, A.1
  • 35
    • 0021061819 scopus 로고
    • Rapid colorimetric assay for cellular growth and survival: Application to proliferation and cytotoxicity assays
    • Mosmann, T. Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays. J. Immunol. Methods 65, 55-63 (1983).
    • (1983) J. Immunol. Methods , vol.65 , pp. 55-63
    • Mosmann, T.1
  • 36
    • 0027160708 scopus 로고
    • Targeted gene expression as a means of altering cell fates and generating dominant phenotypes
    • Brand, A.H. & Perrimon, N. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118, 401-415 (1993).
    • (1993) Development , vol.118 , pp. 401-415
    • Brand, A.H.1    Perrimon, N.2
  • 37
    • 79551670077 scopus 로고    scopus 로고
    • Flybow: Genetic multicolor cell labeling for neural circuit analysis in Drosophila melanogaster
    • Hadjieconomou, D. et al. Flybow: genetic multicolor cell labeling for neural circuit analysis in Drosophila melanogaster. Nat. Methods 8, 260-266 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 260-266
    • Hadjieconomou, D.1
  • 38
    • 84988044061 scopus 로고    scopus 로고
    • A protocol for mosaic analysis with a repressible cell marker (MARCM) in Drosophila
    • Wu, J.S. & Luo, L. A protocol for mosaic analysis with a repressible cell marker (MARCM) in Drosophila. Nat. Protoc. 1, 2583-2589 (2006).
    • (2006) Nat. Protoc. , vol.1 , pp. 2583-2589
    • Wu, J.S.1    Luo, L.2
  • 39
    • 0028208660 scopus 로고
    • Genetics of nanos localization in Drosophila
    • Wang, C., Dickinson, L.K. & Lehmann, R. Genetics of nanos localization in Drosophila. Dev. Dyn. 199, 103-115 (1994).
    • (1994) Dev. Dyn. , vol.199 , pp. 103-115
    • Wang, C.1    Dickinson, L.K.2    Lehmann, R.3
  • 40
    • 84870694131 scopus 로고    scopus 로고
    • Endoreplication and polyploidy: Insights into development and disease
    • Fox, D.T. & Duronio, R.J. Endoreplication and polyploidy: insights into development and disease. Development 140, 3-12 (2013).
    • (2013) Development , vol.140 , pp. 3-12
    • Fox, D.T.1    Duronio, R.J.2
  • 41
    • 84865077565 scopus 로고    scopus 로고
    • A genetic screen for dominant enhancers of the cell-cycle regulator alpha-endosulfne identifes matrimony as a strong functional interactor in Drosophila
    • Von Stetina, J.R., Lafever, K.S., Rubin, M. & Drummond-Barbosa, D. A genetic screen for dominant enhancers of the cell-cycle regulator alpha-endosulfne identifes matrimony as a strong functional interactor in Drosophila. G3 (Bethesda) 1, 607-613 (2011).
    • (2011) G3 (Bethesda) , vol.1 , pp. 607-613
    • Von Stetina, J.R.1    Lafever, K.S.2    Rubin, M.3    Drummond-Barbosa, D.4
  • 42
    • 84900329637 scopus 로고    scopus 로고
    • Protein profling using two-dimensional difference gel electrophoresis (2-d dige)
    • Feret, R. & Lilley, K.S. Protein profling using two-dimensional difference gel electrophoresis (2-d dige). Curr. Protoc. Protein Sci. 75, 22.2 (2014).
    • (2014) Curr. Protoc. Protein Sci. , vol.75 , pp. 222
    • Feret, R.1    Lilley, K.S.2
  • 43
    • 0001358480 scopus 로고
    • Expression of the genes coding for vitellogenin (yolk protein)
    • Bownes, M. Expression of the genes coding for vitellogenin (yolk protein). Annu. Rev. Entomol. 31, 507-531 (1986).
    • (1986) Annu. Rev. Entomol. , vol.31 , pp. 507-531
    • Bownes, M.1
  • 44
    • 79953043801 scopus 로고    scopus 로고
    • The developmental transcriptome of Drosophila melanogaster
    • Graveley, B.R. et al. The developmental transcriptome of Drosophila melanogaster. Nature 471, 473-479 (2011).
    • (2011) Nature , vol.471 , pp. 473-479
    • Graveley, B.R.1
  • 45
    • 0344614600 scopus 로고    scopus 로고
    • Identifcation of TER94, an AAA ATPase protein, as a Bam-dependent component of the Drosophila fusome
    • Leon, A. & McKearin, D. Identifcation of TER94, an AAA ATPase protein, as a Bam-dependent component of the Drosophila fusome. Mol. Biol. Cell 10, 3825-3834 (1999).
    • (1999) Mol. Biol. Cell , vol.10 , pp. 3825-3834
    • Leon, A.1    McKearin, D.2
  • 46
    • 0028222187 scopus 로고
    • Localization of vasa protein to the Drosophila pole plasm is independent of its RNA-binding and helicase activities
    • Liang, L., Diehl-Jones, W. & Lasko, P. Localization of vasa protein to the Drosophila pole plasm is independent of its RNA-binding and helicase activities. Development 120, 1201-1211 (1994).
    • (1994) Development , vol.120 , pp. 1201-1211
    • Liang, L.1    Diehl-Jones, W.2    Lasko, P.3
  • 47
    • 18744389180 scopus 로고    scopus 로고
    • Photo-leucine and photo-methionine allow identifcation of protein-protein interactions in living cells
    • Suchanek, M., Radzikowska, A. & Thiele, C. Photo-leucine and photo-methionine allow identifcation of protein-protein interactions in living cells. Nat. Methods 2, 261-268 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 261-268
    • Suchanek, M.1    Radzikowska, A.2    Thiele, C.3
  • 48
    • 2442453377 scopus 로고    scopus 로고
    • Determining a signifcant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis
    • Karp, N.A., Kreil, D.P. & Lilley, K.S. Determining a signifcant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis. Proteomics 4, 1421-1432 (2004).
    • (2004) Proteomics , vol.4 , pp. 1421-1432
    • Karp, N.A.1    Kreil, D.P.2    Lilley, K.S.3


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