-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
2006 0008
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., etal. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006 0008
-
(2006)
Mol Syst Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
-
2
-
-
0030014833
-
Functional expression of mouse Mdr1 in an outer membrane permeability mutant of Escherichia coli
-
Beja, O., and Bibi, E. (1996) Functional expression of mouse Mdr1 in an outer membrane permeability mutant of Escherichia coli. Proc Natl Acad Sci USA 93: 5969-5974.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 5969-5974
-
-
Beja, O.1
Bibi, E.2
-
3
-
-
33645109038
-
DNA micro-array-based identification of bile-responsive genes in Lactobacillus plantarum
-
Bron, P.A., Molenaar, D., de Vos, W.M., and Kleerebezem, M. (2006) DNA micro-array-based identification of bile-responsive genes in Lactobacillus plantarum. J Appl Microbiol 100: 728-738.
-
(2006)
J Appl Microbiol
, vol.100
, pp. 728-738
-
-
Bron, P.A.1
Molenaar, D.2
de Vos, W.M.3
Kleerebezem, M.4
-
5
-
-
77956100061
-
Bile acids improve the antimicrobial effect of rifaximin
-
Darkoh, C., Lichtenberger, L.M., Ajami, N., Dial, E.J., Jiang, Z.D., and DuPont, H.L. (2010) Bile acids improve the antimicrobial effect of rifaximin. Antimicrob Agents Chemother 54: 3618-3624.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 3618-3624
-
-
Darkoh, C.1
Lichtenberger, L.M.2
Ajami, N.3
Dial, E.J.4
Jiang, Z.D.5
DuPont, H.L.6
-
6
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K.A., and Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 6640-6645.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
7
-
-
79959827651
-
Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut
-
De Paepe, M., Gaboriau-Routhiau, V., Rainteau, D., Rakotobe, S., Taddei, F., and Cerf-Bensussan, N. (2011) Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut. PLoS Genet 7: e1002107.
-
(2011)
PLoS Genet
, vol.7
-
-
De Paepe, M.1
Gaboriau-Routhiau, V.2
Rainteau, D.3
Rakotobe, S.4
Taddei, F.5
Cerf-Bensussan, N.6
-
8
-
-
0031038206
-
Assessment of fecal bacteria with bile acid 7 alpha-dehydroxylating activity for the presence of bai-like genes
-
Doerner, K.C., Takamine, F., LaVoie, C.P., Mallonee, D.H., and Hylemon, P.B. (1997) Assessment of fecal bacteria with bile acid 7 alpha-dehydroxylating activity for the presence of bai-like genes. Appl Environ Microbiol 63: 1185-1188.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1185-1188
-
-
Doerner, K.C.1
Takamine, F.2
LaVoie, C.P.3
Mallonee, D.H.4
Hylemon, P.B.5
-
9
-
-
0030956372
-
MdfA, an Escherichia coli multidrug resistance protein with an extraordinarily broad spectrum of drug recognition
-
Edgar, R., and Bibi, E. (1997) MdfA, an Escherichia coli multidrug resistance protein with an extraordinarily broad spectrum of drug recognition. J Bacteriol 179: 2274-2280.
-
(1997)
J Bacteriol
, vol.179
, pp. 2274-2280
-
-
Edgar, R.1
Bibi, E.2
-
10
-
-
84866280173
-
Dissection of mechanistic principles of a secondary multidrug efflux protein
-
Fluman, N., Ryan, C.M., Whitelegge, J.P., and Bibi, E. (2012) Dissection of mechanistic principles of a secondary multidrug efflux protein. Mol Cell 47: 777-787.
-
(2012)
Mol Cell
, vol.47
, pp. 777-787
-
-
Fluman, N.1
Ryan, C.M.2
Whitelegge, J.P.3
Bibi, E.4
-
11
-
-
0029796966
-
Evidence that TolC is required for functioning of the Mar/AcrAB efflux pump of Escherichia coli
-
Fralick, J.A. (1996) Evidence that TolC is required for functioning of the Mar/AcrAB efflux pump of Escherichia coli. J Bacteriol 178: 5803-5805.
-
(1996)
J Bacteriol
, vol.178
, pp. 5803-5805
-
-
Fralick, J.A.1
-
12
-
-
0033941838
-
Mechanisms of bacterial resistance and response to bile
-
Gunn, J.S. (2000) Mechanisms of bacterial resistance and response to bile. Microb Infect 2: 907-913.
-
(2000)
Microb Infect
, vol.2
, pp. 907-913
-
-
Gunn, J.S.1
-
13
-
-
84857467931
-
Adaptation and preadaptation of Salmonella enterica to bile
-
Hernandez, S.B., Cota, I., Ducret, A., Aussel, L., and Casadesus, J. (2012) Adaptation and preadaptation of Salmonella enterica to bile. PLoS Genet 8: e1002459.
-
(2012)
PLoS Genet
, vol.8
-
-
Hernandez, S.B.1
Cota, I.2
Ducret, A.3
Aussel, L.4
Casadesus, J.5
-
14
-
-
0024373642
-
Regulation of bile acid synthesis. III. Correlation between biliary bile salt hydrophobicity index and the activities of enzymes regulating cholesterol and bile acid synthesis in the rat
-
Heuman, D.M., Hylemon, P.B., and Vlahcevic, Z.R. (1989) Regulation of bile acid synthesis. III. Correlation between biliary bile salt hydrophobicity index and the activities of enzymes regulating cholesterol and bile acid synthesis in the rat. J Lipid Res 30: 1161-1171.
-
(1989)
J Lipid Res
, vol.30
, pp. 1161-1171
-
-
Heuman, D.M.1
Hylemon, P.B.2
Vlahcevic, Z.R.3
-
15
-
-
0033611305
-
The continuing importance of bile acids in liver and intestinal disease
-
Hofmann, A.F. (1999) The continuing importance of bile acids in liver and intestinal disease. Arch Intern Med 159: 2647-2658.
-
(1999)
Arch Intern Med
, vol.159
, pp. 2647-2658
-
-
Hofmann, A.F.1
-
16
-
-
84860480499
-
Functional and biochemical characterisation of the Escherichia coli major facilitator superfamily multidrug transporter MdtM
-
Holdsworth, S.R., and Law, C.J. (2012a) Functional and biochemical characterisation of the Escherichia coli major facilitator superfamily multidrug transporter MdtM. Biochimie 94: 1334-1346.
-
(2012)
Biochimie
, vol.94
, pp. 1334-1346
-
-
Holdsworth, S.R.1
Law, C.J.2
-
17
-
-
84875261608
-
The major facilitator superfamily transporter MdtM contributes to the intrinsic resistance of Escherichia coli to quaternary ammonium compounds
-
Holdsworth, S.R., and Law, C.J. (2012b) The major facilitator superfamily transporter MdtM contributes to the intrinsic resistance of Escherichia coli to quaternary ammonium compounds. J Antimicrob Chemother 68: 831-839.
-
(2012)
J Antimicrob Chemother
, vol.68
, pp. 831-839
-
-
Holdsworth, S.R.1
Law, C.J.2
-
18
-
-
84878009128
-
Multidrug resistance protein MdtM adds to the repertoire of antiporters involved in alkaline pH homeostasis in Escherichia coli
-
Holdsworth, S.R., and Law, C.J. (2013) Multidrug resistance protein MdtM adds to the repertoire of antiporters involved in alkaline pH homeostasis in Escherichia coli. BMC Microbiol 13: 113.
-
(2013)
BMC Microbiol
, vol.13
, pp. 113
-
-
Holdsworth, S.R.1
Law, C.J.2
-
19
-
-
0025967219
-
Mechanism of intestinal 7 alpha-dehydroxylation of cholic acid: evidence that allo-deoxycholic acid is an inducible side-product
-
Hylemon, P.B., Melone, P.D., Franklund, C.V., Lund, E., and Bjorkhem, I. (1991) Mechanism of intestinal 7 alpha-dehydroxylation of cholic acid: evidence that allo-deoxycholic acid is an inducible side-product. J Lipid Res 32: 89-96.
-
(1991)
J Lipid Res
, vol.32
, pp. 89-96
-
-
Hylemon, P.B.1
Melone, P.D.2
Franklund, C.V.3
Lund, E.4
Bjorkhem, I.5
-
20
-
-
32244434196
-
Characterization of the human upper gastrointestinal contents under conditions simulating bioavailability/bioequivalence studies
-
Kalantzi, L., Goumas, K., Kalioras, V., Abrahamsson, B., Dressman, J.B., and Reppas, C. (2006) Characterization of the human upper gastrointestinal contents under conditions simulating bioavailability/bioequivalence studies. Pharm Res 23: 165-176.
-
(2006)
Pharm Res
, vol.23
, pp. 165-176
-
-
Kalantzi, L.1
Goumas, K.2
Kalioras, V.3
Abrahamsson, B.4
Dressman, J.B.5
Reppas, C.6
-
21
-
-
0027439285
-
Movement of fatty acids, fatty acid analogues, and bile acids across phospholipid bilayers
-
Kamp, F., Hamilton, J.A., and Westerhoff, H.V. (1993) Movement of fatty acids, fatty acid analogues, and bile acids across phospholipid bilayers. Biochemistry 32: 11074-11086.
-
(1993)
Biochemistry
, vol.32
, pp. 11074-11086
-
-
Kamp, F.1
Hamilton, J.A.2
Westerhoff, H.V.3
-
22
-
-
0034115142
-
Interplay between efflux pumps may provide either additive or multiplicative effects on drug resistance
-
Lee, A., Mao, W., Warren, M.S., Mistry, A., Hoshino, K., Okumura, R., etal. (2000) Interplay between efflux pumps may provide either additive or multiplicative effects on drug resistance. J Bacteriol 182: 3142-3150.
-
(2000)
J Bacteriol
, vol.182
, pp. 3142-3150
-
-
Lee, A.1
Mao, W.2
Warren, M.S.3
Mistry, A.4
Hoshino, K.5
Okumura, R.6
-
23
-
-
0037452620
-
The Escherichia coli multidrug transporter MdfA catalyzes both electrogenic and electroneutral transport reactions
-
Lewinson, O., Adler, J., Poelarends, G.J., Mazurkiewicz, P., Driessen, A.J., and Bibi, E. (2003) The Escherichia coli multidrug transporter MdfA catalyzes both electrogenic and electroneutral transport reactions. Proc Natl Acad Sci USA 100: 1667-1672.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1667-1672
-
-
Lewinson, O.1
Adler, J.2
Poelarends, G.J.3
Mazurkiewicz, P.4
Driessen, A.J.5
Bibi, E.6
-
24
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley, R.E., Peterson, D.A., and Gordon, J.I. (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848.
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
25
-
-
0442307441
-
Efflux-mediated drug resistance in bacteria
-
Li, X.Z., and Nikaido, H. (2004) Efflux-mediated drug resistance in bacteria. Drugs 64: 159-204.
-
(2004)
Drugs
, vol.64
, pp. 159-204
-
-
Li, X.Z.1
Nikaido, H.2
-
26
-
-
0028926676
-
Genes acrA and acrB encode a stress-induced efflux system of Escherichia coli
-
Ma, D., Cook, D.N., Alberti, M., Pon, N.G., Nikaido, H., and Hearst, J.E. (1995) Genes acrA and acrB encode a stress-induced efflux system of Escherichia coli. Mol Microbiol 16: 45-55.
-
(1995)
Mol Microbiol
, vol.16
, pp. 45-55
-
-
Ma, D.1
Cook, D.N.2
Alberti, M.3
Pon, N.G.4
Nikaido, H.5
Hearst, J.E.6
-
27
-
-
0027478292
-
Colonic mucosal pH in humans
-
McDougall, C.J., Wong, R., Scudera, P., Lesser, M., and DeCosse, J.J. (1993) Colonic mucosal pH in humans. Dig Dis Sci 38: 542-545.
-
(1993)
Dig Dis Sci
, vol.38
, pp. 542-545
-
-
McDougall, C.J.1
Wong, R.2
Scudera, P.3
Lesser, M.4
DeCosse, J.J.5
-
28
-
-
79955463871
-
The role of bile salts in digestion
-
Maldonado-Valderrama, J., Wilde, P., Macierzanka, A., and Mackie, A. (2011) The role of bile salts in digestion. Adv Colloid Interface Sci 165: 36-46.
-
(2011)
Adv Colloid Interface Sci
, vol.165
, pp. 36-46
-
-
Maldonado-Valderrama, J.1
Wilde, P.2
Macierzanka, A.3
Mackie, A.4
-
29
-
-
0030447221
-
Sequencing and expression of a gene encoding a bile acid transporter from Eubacterium sp. strain VPI 12708
-
Mallonee, D.H., and Hylemon, P.B. (1996) Sequencing and expression of a gene encoding a bile acid transporter from Eubacterium sp. strain VPI 12708. J Bacteriol 178: 7053-7058.
-
(1996)
J Bacteriol
, vol.178
, pp. 7053-7058
-
-
Mallonee, D.H.1
Hylemon, P.B.2
-
30
-
-
73449143181
-
Effect of bile salts on the DNA and membrane integrity of enteric bacteria
-
Merritt, M.E., and Donaldson, J.R. (2009) Effect of bile salts on the DNA and membrane integrity of enteric bacteria. J Med Microbiol 58: 1533-1541.
-
(2009)
J Med Microbiol
, vol.58
, pp. 1533-1541
-
-
Merritt, M.E.1
Donaldson, J.R.2
-
31
-
-
0030756063
-
Natural functions of bacterial multidrug transporters
-
Neyfakh, A.A. (1997) Natural functions of bacterial multidrug transporters. Trends Microbiol 5: 309-313.
-
(1997)
Trends Microbiol
, vol.5
, pp. 309-313
-
-
Neyfakh, A.A.1
-
32
-
-
0034817367
-
Analysis of a complete library of putative drug transporter genes in Escherichia coli
-
Nishino, K., and Yamaguchi, A. (2001) Analysis of a complete library of putative drug transporter genes in Escherichia coli. J Bacteriol 183: 5803-5812.
-
(2001)
J Bacteriol
, vol.183
, pp. 5803-5812
-
-
Nishino, K.1
Yamaguchi, A.2
-
33
-
-
0017252901
-
The proton electrochemical gradient in Escherichia coli cells
-
Padan, E., Zilberstein, D., and Rottenberg, H. (1976) The proton electrochemical gradient in Escherichia coli cells. Eur J Biochem 63: 533-541.
-
(1976)
Eur J Biochem
, vol.63
, pp. 533-541
-
-
Padan, E.1
Zilberstein, D.2
Rottenberg, H.3
-
34
-
-
27944483300
-
Alkaline pH homeostasis in bacteria: new insights
-
Padan, E., Bibi, E., Ito, M., and Krulwich, T.A. (2005) Alkaline pH homeostasis in bacteria: new insights. Biochim Biophys Acta 1717: 67-88.
-
(2005)
Biochim Biophys Acta
, vol.1717
, pp. 67-88
-
-
Padan, E.1
Bibi, E.2
Ito, M.3
Krulwich, T.A.4
-
35
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
36
-
-
33747154459
-
Multidrug-resistance efflux pumps - not just for resistance
-
Piddock, L.J. (2006) Multidrug-resistance efflux pumps - not just for resistance. Nat Rev Microbiol 4: 629-636.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 629-636
-
-
Piddock, L.J.1
-
37
-
-
0019873820
-
Estimation of globular protein secondary structure from circular dichroism
-
Provencher, S.W., and Glockner, J. (1981) Estimation of globular protein secondary structure from circular dichroism. Biochemistry 20: 33-37.
-
(1981)
Biochemistry
, vol.20
, pp. 33-37
-
-
Provencher, S.W.1
Glockner, J.2
-
38
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K.S., Manichanh, C., etal. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
-
39
-
-
33244467651
-
Bile salt biotransformations by human intestinal bacteria
-
Ridlon, J.M., Kang, D.J., and Hylemon, P.B. (2006) Bile salt biotransformations by human intestinal bacteria. J Lipid Res 47: 241-259.
-
(2006)
J Lipid Res
, vol.47
, pp. 241-259
-
-
Ridlon, J.M.1
Kang, D.J.2
Hylemon, P.B.3
-
40
-
-
0014544914
-
Duodenal pH values in normal controls and in patients with duodenal ulcer
-
Rune, S.J., and Viskum, K. (1969) Duodenal pH values in normal controls and in patients with duodenal ulcer. Gut 10: 569-571.
-
(1969)
Gut
, vol.10
, pp. 569-571
-
-
Rune, S.J.1
Viskum, K.2
-
41
-
-
79952166228
-
Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli
-
Soo, V.W., Hanson-Manful, P., and Patrick, W.M. (2011) Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli. Proc Natl Acad Sci USA 108: 1484-1489.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 1484-1489
-
-
Soo, V.W.1
Hanson-Manful, P.2
Patrick, W.M.3
-
42
-
-
0026611734
-
The IC50: an exactly defined measure of antibiotic sensitivity
-
Soothill, J.S., Ward, R., and Girling, A.J. (1992) The IC50: an exactly defined measure of antibiotic sensitivity. J Antimicrob Chemother 29: 137-139.
-
(1992)
J Antimicrob Chemother
, vol.29
, pp. 137-139
-
-
Soothill, J.S.1
Ward, R.2
Girling, A.J.3
-
43
-
-
67049115572
-
A coordinated network of transporters with overlapping specificities provides a robust survival strategy
-
Tal, N., and Schuldiner, S. (2009) A coordinated network of transporters with overlapping specificities provides a robust survival strategy. Proc Natl Acad Sci USA 106: 9051-9056.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9051-9056
-
-
Tal, N.1
Schuldiner, S.2
-
44
-
-
0030934759
-
Active efflux of bile salts by Escherichia coli
-
Thanassi, D.G., Cheng, L.W., and Nikaido, H. (1997) Active efflux of bile salts by Escherichia coli. J Bacteriol 179: 2512-2518.
-
(1997)
J Bacteriol
, vol.179
, pp. 2512-2518
-
-
Thanassi, D.G.1
Cheng, L.W.2
Nikaido, H.3
-
45
-
-
40849147103
-
Genomic and genetic characterization of the bile stress response of probiotic Lactobacillus reuteri ATCC 55730
-
Whitehead, K., Versalovic, J., Roos, S., and Britton, R.A. (2008) Genomic and genetic characterization of the bile stress response of probiotic Lactobacillus reuteri ATCC 55730. Appl Environ Microbiol 74: 1812-1819.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1812-1819
-
-
Whitehead, K.1
Versalovic, J.2
Roos, S.3
Britton, R.A.4
-
46
-
-
3242877618
-
DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data
-
Whitmore, L., and Wallace, B.A. (2004) DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data. Nucleic Acids Res 32: W668-W673.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Whitmore, L.1
Wallace, B.A.2
-
47
-
-
33646445156
-
Structure of the multidrug transporter EmrD from Escherichia coli
-
Yin, Y., He, X., Szewczyk, P., Nguyen, T., and Chang, G. (2006) Structure of the multidrug transporter EmrD from Escherichia coli. Science 312: 741-744.
-
(2006)
Science
, vol.312
, pp. 741-744
-
-
Yin, Y.1
He, X.2
Szewczyk, P.3
Nguyen, T.4
Chang, G.5
-
48
-
-
0033821347
-
Cholate resistance in Lactococcus lactis is mediated by an ATP-dependent multispecific organic anion transporter
-
Yokota, A., Veenstra, M., Kurdi, P., van Veen, H.W., and Konings, W.N. (2000) Cholate resistance in Lactococcus lactis is mediated by an ATP-dependent multispecific organic anion transporter. J Bacteriol 182: 5196-5201.
-
(2000)
J Bacteriol
, vol.182
, pp. 5196-5201
-
-
Yokota, A.1
Veenstra, M.2
Kurdi, P.3
van Veen, H.W.4
Konings, W.N.5
|