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Volumn 202, Issue 4, 2014, Pages 1197-1211

A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis

Author keywords

Arabidopsis; Mimicry; MiR169 isoforms; Nuclear Factor Y subunit A (NF YA); Root branching

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84899921226     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.12735     Document Type: Article
Times cited : (194)

References (83)
  • 1
    • 55049113363 scopus 로고    scopus 로고
    • Evolution of microRNAs and their targets: are all microRNAs biologically relevant?
    • Axtell MJ. 2008. Evolution of microRNAs and their targets: are all microRNAs biologically relevant? Biochimica et Biophysica Acta 1779: 725-734.
    • (2008) Biochimica et Biophysica Acta , vol.1779 , pp. 725-734
    • Axtell, M.J.1
  • 2
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP. 2009. MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 5
    • 4544277178 scopus 로고
    • An easy technique for the clearing of histochemically stained plant tissue
    • Beeckman T, Engler G. 1994. An easy technique for the clearing of histochemically stained plant tissue. Plant Molecular Biology Reporter 12: 37-42.
    • (1994) Plant Molecular Biology Reporter , vol.12 , pp. 37-42
    • Beeckman, T.1    Engler, G.2
  • 7
    • 58849093262 scopus 로고    scopus 로고
    • Revisiting the principles of microRNA target recognition and mode of action
    • Brodersen P, Voinnet O. 2009. Revisiting the principles of microRNA target recognition and mode of action. Nature Reviews Molecular Cell Biology 10: 141-148.
    • (2009) Nature Reviews Molecular Cell Biology , vol.10 , pp. 141-148
    • Brodersen, P.1    Voinnet, O.2
  • 8
    • 77950632672 scopus 로고    scopus 로고
    • Phloem small RNAs, nutrient stress responses, and systemic mobility
    • Buhtz A, Pieritz J, Springer F, Kehr J. 2010. Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biology 10: 64.
    • (2010) BMC Plant Biology , vol.10 , pp. 64
    • Buhtz, A.1    Pieritz, J.2    Springer, F.3    Kehr, J.4
  • 9
    • 79959717869 scopus 로고    scopus 로고
    • Identification and characterization of NF-Y transcription factor families in the monocot model plant Brachypodium distachyon
    • Cao S, Kumimoto RW, Siriwardana CL, Risinger JR, Holt BF. 2011. Identification and characterization of NF-Y transcription factor families in the monocot model plant Brachypodium distachyon. PLoS ONE 6: e21805.
    • (2011) PLoS ONE , vol.6
    • Cao, S.1    Kumimoto, R.W.2    Siriwardana, C.L.3    Risinger, J.R.4    Holt, B.F.5
  • 13
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: a simplified method for Agrobacterium mediated transformation of Arabidopsis thaliana
    • Clough SJ, Bent AF. 1998. Floral dip: a simplified method for Agrobacterium mediated transformation of Arabidopsis thaliana. Plant Journal 16: 735-743.
    • (1998) Plant Journal , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 15
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. 2005. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant physiology 139: 5.
    • (2005) Plant physiology , vol.139 , pp. 5
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 20
    • 44349140538 scopus 로고    scopus 로고
    • An NF-Y-dependent switch of positive and negative histone methyl marks on CCAAT promoters
    • Donati G, Gatta R, Dolfini D, Fossati A, Ceribelli M, Mantovani R. 2008. An NF-Y-dependent switch of positive and negative histone methyl marks on CCAAT promoters. PLoS ONE 3: e2066.
    • (2008) PLoS ONE , vol.3
    • Donati, G.1    Gatta, R.2    Dolfini, D.3    Fossati, A.4    Ceribelli, M.5    Mantovani, R.6
  • 22
    • 84857758974 scopus 로고    scopus 로고
    • Quantitative analysis of lateral root development: pitfalls and how to avoid them
    • Dubrovsky JG, Forde BG. 2012. Quantitative analysis of lateral root development: pitfalls and how to avoid them. The Plant Cell 24: 4-14.
    • (2012) The Plant Cell , vol.24 , pp. 4-14
    • Dubrovsky, J.G.1    Forde, B.G.2
  • 23
    • 0035787062 scopus 로고    scopus 로고
    • Early primordium morphogenesis during lateral root initiation in Arabidopsis thaliana
    • Dubrovsky JG, Rost TL, Colón-Carmona A, Doerner P. 2001. Early primordium morphogenesis during lateral root initiation in Arabidopsis thaliana. Planta 214: 30-36.
    • (2001) Planta , vol.214 , pp. 30-36
    • Dubrovsky, J.G.1    Rost, T.L.2    Colón-Carmona, A.3    Doerner, P.4
  • 24
    • 0032117904 scopus 로고    scopus 로고
    • Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis
    • Edwards D, Murray JAH, Smith AG. 1998. Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. Plant physiology 117: 1015-1022.
    • (1998) Plant physiology , vol.117 , pp. 1015-1022
    • Edwards, D.1    Murray, J.A.H.2    Smith, A.G.3
  • 26
    • 0036007983 scopus 로고    scopus 로고
    • Lateral root formation is blocked by a gain of function mutation in the SOLITARY ROOT/IAA14 gene of Arabidopsis
    • Fukaki H, Tameda S, Masuda H, Tasaka M. 2002. Lateral root formation is blocked by a gain of function mutation in the SOLITARY ROOT/IAA14 gene of Arabidopsis. Plant Journal 29: 153-168.
    • (2002) Plant Journal , vol.29 , pp. 153-168
    • Fukaki, H.1    Tameda, S.2    Masuda, H.3    Tasaka, M.4
  • 31
    • 0035925062 scopus 로고    scopus 로고
    • Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana
    • Gusmaroli G, Tonelli C, Mantovani R. 2001. Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana. Gene 264: 173-185.
    • (2001) Gene , vol.264 , pp. 173-185
    • Gusmaroli, G.1    Tonelli, C.2    Mantovani, R.3
  • 32
    • 0037160525 scopus 로고    scopus 로고
    • Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits
    • Gusmaroli G, Tonelli C, Mantovani R. 2002. Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits. Gene 283: 41-48.
    • (2002) Gene , vol.283 , pp. 41-48
    • Gusmaroli, G.1    Tonelli, C.2    Mantovani, R.3
  • 35
    • 84889816089 scopus 로고    scopus 로고
    • Auxin and the integration of environmental signals into plant root development
    • Kazan K. 2013. Auxin and the integration of environmental signals into plant root development. Annals of Botany 112: 1655-1665.
    • (2013) Annals of Botany , vol.112 , pp. 1655-1665
    • Kazan, K.1
  • 40
    • 84868282978 scopus 로고    scopus 로고
    • Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members
    • Leyva-González MA, Ibarra-Laclette E, Cruz-Ramírez A, Herrera-Estrella L. 2012. Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members. PLoS ONE 7: e48138.
    • (2012) PLoS ONE , vol.7
    • Leyva-González, M.A.1    Ibarra-Laclette, E.2    Cruz-Ramírez, A.3    Herrera-Estrella, L.4
  • 41
    • 57749110646 scopus 로고    scopus 로고
    • The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance
    • Li WX, Oono Y, Zhu J, He XJ, Wu JM, Iida K, Lu XY, Cui X, Jin H, Zhu JK. 2008. The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. The Plant cell 20: 2238-2251.
    • (2008) The Plant cell , vol.20 , pp. 2238-2251
    • Li, W.X.1    Oono, Y.2    Zhu, J.3    He, X.J.4    Wu, J.M.5    Iida, K.6    Lu, X.Y.7    Cui, X.8    Jin, H.9    Zhu, J.K.10
  • 42
    • 77349099230 scopus 로고    scopus 로고
    • Characterization and expression analysis of the Arabidopsis mir169 family
    • Li Y, Fu Y, Ji L, Wu C, Zheng C. 2010. Characterization and expression analysis of the Arabidopsis mir169 family. Plant Science 178: 271-280.
    • (2010) Plant Science , vol.178 , pp. 271-280
    • Li, Y.1    Fu, Y.2    Ji, L.3    Wu, C.4    Zheng, C.5
  • 43
    • 84869099388 scopus 로고    scopus 로고
    • Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana
    • Liang G, He H, Yu D. 2012. Identification of nitrogen starvation-responsive microRNAs in Arabidopsis thaliana. PLoS ONE 7: e48951.
    • (2012) PLoS ONE , vol.7
    • Liang, G.1    He, H.2    Yu, D.3
  • 44
    • 79953067376 scopus 로고    scopus 로고
    • Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability
    • Licausi F, Weits DA, Pant BD, Scheible WR, Geigenberger P, Van Dongen JT. 2011. Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability. New phytologist 190: 442-456.
    • (2011) New phytologist , vol.190 , pp. 442-456
    • Licausi, F.1    Weits, D.A.2    Pant, B.D.3    Scheible, W.R.4    Geigenberger, P.5    Van Dongen, J.T.6
  • 45
    • 77953219475 scopus 로고    scopus 로고
    • bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis
    • Liu JX, Howell SH. 2010. bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis. The Plant cell 22: 782-796.
    • (2010) The Plant cell , vol.22 , pp. 782-796
    • Liu, J.X.1    Howell, S.H.2
  • 48
    • 0031027182 scopus 로고    scopus 로고
    • Organization and cell differentiation in lateral roots of Arabidopsis thaliana
    • Malamy JE, Benfey PN. 1997. Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 124: 33-44.
    • (1997) Development , vol.124 , pp. 33-44
    • Malamy, J.E.1    Benfey, P.N.2
  • 50
    • 0032851812 scopus 로고    scopus 로고
    • The molecular biology of the CCAAT-binding factor NF-Y
    • Mantovani R. 1999. The molecular biology of the CCAAT-binding factor NF-Y. Gene 239: 15-27.
    • (1999) Gene , vol.239 , pp. 15-27
    • Mantovani, R.1
  • 52
    • 77953193344 scopus 로고    scopus 로고
    • miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
    • Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A. 2010. miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. The Plant cell 22: 1104-1117.
    • (2010) The Plant cell , vol.22 , pp. 1104-1117
    • Marin, E.1    Jouannet, V.2    Herz, A.3    Lokerse, A.S.4    Weijers, D.5    Vaucheret, H.6    Nussaume, L.7    Crespi, M.D.8    Maizel, A.9
  • 53
    • 84870577197 scopus 로고    scopus 로고
    • Expression-based functional investigation of the organ-specific microRNAs in Arabidopsis
    • Meng Y, Shao C, Ma X, Wang H, Chen M. 2012. Expression-based functional investigation of the organ-specific microRNAs in Arabidopsis. PLoS ONE 7: e50870.
    • (2012) PLoS ONE , vol.7
    • Meng, Y.1    Shao, C.2    Ma, X.3    Wang, H.4    Chen, M.5
  • 55
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassays with tobacco tissue cultures
    • Murashige T, Skoog F. 1962. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiologia Plantarium 15: 473-497.
    • (1962) Physiologia Plantarium , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 58
    • 34250374820 scopus 로고    scopus 로고
    • Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot
    • Pall GS, Codony-Servat C, Byrne J, Ritchie L, Hamilton A. 2007. Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot. Nucleic acids research 35: e60.
    • (2007) Nucleic acids research , vol.35
    • Pall, G.S.1    Codony-Servat, C.2    Byrne, J.3    Ritchie, L.4    Hamilton, A.5
  • 59
    • 67650156804 scopus 로고    scopus 로고
    • Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
    • Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR. 2009. Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant physiology 150: 1541-1555.
    • (2009) Plant physiology , vol.150 , pp. 1541-1555
    • Pant, B.D.1    Musialak-Lange, M.2    Nuc, P.3    May, P.4    Buhtz, A.5    Kehr, J.6    Walther, D.7    Scheible, W.R.8
  • 64
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing.
    • R Development Core Team. 2012. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2012) R: a language and environment for statistical computing
  • 65
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. 2006. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes & development 20: 3407-3425.
    • (2006) Genes & development , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 67
    • 84859949607 scopus 로고    scopus 로고
    • Dissecting the effects of nitrate, sucrose and osmotic potential on Arabidopsis root and shoot system growth in laboratory assays
    • Roycewicz P, Malamy JE. 2012. Dissecting the effects of nitrate, sucrose and osmotic potential on Arabidopsis root and shoot system growth in laboratory assays. Philosophical Transactions of the Royal Society of London B 367: 1489-1500.
    • (2012) Philosophical Transactions of the Royal Society of London B , vol.367 , pp. 1489-1500
    • Roycewicz, P.1    Malamy, J.E.2
  • 68
    • 84861841898 scopus 로고    scopus 로고
    • Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1
    • Schott G, Mari-Ordonez A, Himber C, Alioua A, Voinnet O, Dunoyer P. 2012. Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1. The EMBO journal 31: 2553-2565.
    • (2012) The EMBO journal , vol.31 , pp. 2553-2565
    • Schott, G.1    Mari-Ordonez, A.2    Himber, C.3    Alioua, A.4    Voinnet, O.5    Dunoyer, P.6
  • 69
    • 60249083047 scopus 로고    scopus 로고
    • Tissue-specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity
    • Siefers N, Dang KK, Kumimoto RW, Bynum WE IV, Tayrose G, Holt BF III. 2009. Tissue-specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity. Plant physiology 149: 625-641.
    • (2009) Plant physiology , vol.149 , pp. 625-641
    • Siefers, N.1    Dang, K.K.2    Kumimoto, R.W.3    Bynum IV, W.E.4    Tayrose, G.5    Holt III, B.F.6
  • 70
    • 84877082243 scopus 로고    scopus 로고
    • Small RNA profiling of virus-infected grapevines: evidences for virus infection-associated and variety-specific miRNAs
    • Singh K, Talla A, Qiu W. 2012. Small RNA profiling of virus-infected grapevines: evidences for virus infection-associated and variety-specific miRNAs. Functional & integrative genomics 12: 659-669.
    • (2012) Functional & integrative genomics , vol.12 , pp. 659-669
    • Singh, K.1    Talla, A.2    Qiu, W.3
  • 71
    • 43149096961 scopus 로고    scopus 로고
    • In silico identification of conserved microRNAs in large number of diverse plant species
    • Sunkar R, Jagadeeswaran G. 2008. In silico identification of conserved microRNAs in large number of diverse plant species. BMC plant biology 8: 37.
    • (2008) BMC plant biology , vol.8 , pp. 37
    • Sunkar, R.1    Jagadeeswaran, G.2
  • 72
    • 77957328824 scopus 로고    scopus 로고
    • A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana
    • Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D. 2010. A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS genetics 6: e1001031.
    • (2010) PLoS genetics , vol.6
    • Todesco, M.1    Rubio-Somoza, I.2    Paz-Ares, J.3    Weigel, D.4
  • 73
    • 55949107508 scopus 로고    scopus 로고
    • High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of phloem development and structure in Arabidopsis
    • Truernit E, Bauby H, Dubreucq B, Grandjean O, Runions J, Barthélémy J, Palauqui J-C. 2008. High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of phloem development and structure in Arabidopsis. The Plant Cell 20: 1494-1503.
    • (2008) The Plant Cell , vol.20 , pp. 1494-1503
    • Truernit, E.1    Bauby, H.2    Dubreucq, B.3    Grandjean, O.4    Runions, J.5    Barthélémy, J.6    Palauqui, J.-C.7
  • 74
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. 2002. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome biology 3: research0034.
    • (2002) Genome biology , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 76
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
    • Varkonyi-Gasic E, Wu R, Wood M, Walton EF, Hellens RP. 2007. Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 3: 12.
    • (2007) Plant Methods , vol.3 , pp. 12
    • Varkonyi-Gasic, E.1    Wu, R.2    Wood, M.3    Walton, E.F.4    Hellens, R.P.5
  • 77
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet O. 2009. Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 79
    • 33845780071 scopus 로고    scopus 로고
    • CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis
    • Wenkel S, Turck F, Singer K, Gissot L, Le Gourrierec J, Samach A, Coupland G. 2006. CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. The Plant Cell 18: 2971-2984.
    • (2006) The Plant Cell , vol.18 , pp. 2971-2984
    • Wenkel, S.1    Turck, F.2    Singer, K.3    Gissot, L.4    Le Gourrierec, J.5    Samach, A.6    Coupland, G.7
  • 82
    • 79955782917 scopus 로고    scopus 로고
    • Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis
    • Zhao M, Ding H, Zhu JK, Zhang F, Li WX. 2011. Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. New phytologist 190: 906-915.
    • (2011) New phytologist , vol.190 , pp. 906-915
    • Zhao, M.1    Ding, H.2    Zhu, J.K.3    Zhang, F.4    Li, W.X.5
  • 83
    • 55049118172 scopus 로고    scopus 로고
    • Identification of cold-inducible microRNAs in plants by transcriptome analysis
    • Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W. 2008. Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochimica et Biophysica Acta 1779: 780-788.
    • (2008) Biochimica et Biophysica Acta , vol.1779 , pp. 780-788
    • Zhou, X.1    Wang, G.2    Sutoh, K.3    Zhu, J.K.4    Zhang, W.5


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