Oscillating gene expression determines competence for periodic Arabidopsis root branching

Science

Volumn 329, Issue 5997, 2010, Pages 1306-1311

  Moreno Risueno, Miguel A ^a   Van Norman, Jaimie M ^a   Moreno, Antonio ^b   Zhang, Jingyuan ^a   Ahnert, Sebastian E ^c   Benfey, Philip N ^a  

^a DUKE UNIVERSITY   (United States)

^b Consejo Superior de Investigaciones Científicas   (Spain)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

LUCIFERASE;

ANIMAL; DEVELOPMENTAL BIOLOGY; GENE EXPRESSION; GENETIC MARKER; HERB; MOLECULAR ANALYSIS; PERIODICITY; ROOT ARCHITECTURE;

ARABIDOPSIS; ARTICLE; GENE EXPRESSION; MICROARRAY ANALYSIS; MOLECULAR CLOCK; NONHUMAN; OSCILLATION; PERIODICITY; PLANT ROOT; PRIORITY JOURNAL; PROMOTER REGION; REPORTER GENE; TRANSCRIPTION REGULATION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENE REGULATORY NETWORKS; GENES, PLANT; GENES, REPORTER; GRAVITATION; INDOLEACETIC ACIDS; MERISTEM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHTHALIMIDES; PLANT ROOTS; PROMOTER REGIONS, GENETIC; SIGNAL TRANSDUCTION; TEMPERATURE; TIME FACTORS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ANIMALIA; ARABIDOPSIS;

EID: 77956527844     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1191937     Document Type: Article

References (36)

1. A. P. McGregor, M. Pechmann, E. E. Schwager, W. G. Damen, Commun. Integr. Biol. 2, 174 (2009).
2. P. McSteen, O. Leyser, Annu. Rev. Plant Biol. 56, 353 (2005).
3. M. L. Dequéant, O. Pourquié, Nat. Rev. Genet. 9, 370 (2008).
4. M. Lucas et al., PLoS ONE 3, e3673 (2008).
5. M. L. Dequéant et al., Science 314, 1595 (2006).
6. M. G. Heisler et al., Curr. Biol. 15, 1899 (2005).
7. J. E. Malamy, P. N. Benfey, Development 124, 33 (1997).
8. J. E. Malamy, K. S. Ryan, Plant Physiol. 127, 899 (2001).
9. B. Péret et al., Trends Plant Sci. 14, 399 (2009).
10. I. De Smet et al., Development 134, 681 (2007).
11. Materials and methods are available as supporting material on Science Online.
12. J. G. Dubrovsky, G. A. Gambetta, A. Hernandez-Barrera, S. Shishkova, I. Gonzalez, Ann. Bot. (London) 97, 903 (2006).
13. J. C. Dunlap et al., Cold Spring Harb. Symp. Quant. Biol. 72, 57 (2007).
14. C. S. Pittendrigh, Annu. Rev. Physiol. 55, 17 (1993).
15. H. Fukaki, Y. Okushima, M. Tasaka, Int. Rev. Cytol. 256, 111 (2007).
16. I. De Smet et al., Proc. Natl. Acad. Sci. U.S.A. 107, 2705 (2010).
17. T. Ulmasov, J. Murfett, G. Hagen, T. J. Guilfoyle, Plant Cell 9, 1963 (1997).
18. J. G. Dubrovsky et al., Proc. Natl. Acad. Sci. U.S.A. 105, 8790 (2008).
19. M. Laskowski et al., PLoS Biol. 6, e307 (2008).
20. F. A. Ditengou et al., Proc. Natl. Acad. Sci. U.S.A. 105, 18818 (2008).
21. M. Lucas, C. Godin, C. Jay-Allemand, L. Laplaze, J. Exp. Bot. 59, 55 (2008).
22. S. E. Ahnert, K. Willbrand, F. C. Brown, T. M. Fink, Bioinformatics 22, 1471 (2006).
23. M. L. Dequéant et al., PLoS ONE 3, e2856 (2008).
24. I. De Smet et al., Science 322, 594 (2008).
25. S. Vanneste et al., Plant Cell 17, 3035 (2005).
26. Y. Okushima, H. Fukaki, M. Onoda, A. Theologis, M. Tasaka, Plant Cell 19, 118 (2007).
27. H. Fukaki, S. Tameda, H. Masuda, M. Tasaka, Plant J. 29, 153 (2002).
28. S. M. Brady et al., Science 318, 801 (2007).
29. P. L. Lu et al., Plant Mol. Biol. 63, 289 (2007).
30. M. Kubo et al., Genes Dev. 19, 1855 (2005).
31. K. Himanen et al., Proc. Natl. Acad. Sci. U.S.A. 101, 5146 (2004).
32. J. R. Dinneny, M. F. Yanofsky, Bioessays 27, 42 (2005).
33. L. Yant, J. Mathieu, M. Schmid, Curr. Opin. Plant Biol. 12, 580 (2009).
34. H. Jönsson, M. G. Heisler, B. E. Shapiro, E. M. Meyerowitz, E. Mjolsness, Proc. Natl. Acad. Sci. U.S.A. 103, 1633 (2006).
35. C. Schröter et al., Dev. Dyn. 237, 545 (2008).
36. We thank H. Tsukagoshi for cloning the promoter regions of ARF7, SHP1, and ATAF1. This work was supported by grants to P.N.B. from Defense Advanced Research Projects Agency (DARPA, grants HR0011-05-1-0057 and HR0011- 09-1-0055) and the NIH (R01-GM043778); a fellowship from the Ministry of Science and Innovation (MICINN), government of Spain, to M.A.M.-R.; a National Research Service Award fellowship from the NIH to J.M.V.N.; and support from the Leverhulme Trust, UK, to S.E.A. We thank W. Busch, J. Petricka, I. Rubio-Somoza, and R. Sozzani for critical reading of the manuscript. The authors would like to thank O. Pourquie for many useful discussions. The authors have declared that no competing interests exist. The National Center for Biotechnology Information Gene Expression Omnibus accession numbers for new microarrays data discussed in this manuscript are GSE21611.