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Volumn 88, Issue 2, 2014, Pages 296-308

Fungal succession in an in-vessel composting system characterized using 454 pyrosequencing

Author keywords

Biodiversity; Compost; Thermophiles

Indexed keywords

AGARICALES; ASCOMYCOTA; BASIDIOMYCOTA; EUROTIALES; FUNGI; MICROASCALES; MUCORALES; OTUS; SACCHAROMYCETALES; SORDARIALES;

EID: 84899895531     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12293     Document Type: Article
Times cited : (105)

References (51)
  • 1
    • 19444362151 scopus 로고    scopus 로고
    • Isolation and identification of fungal communities in compost and vermicompost
    • Anastasi A, Varese GC & Filipello Marchisio V (2005) Isolation and identification of fungal communities in compost and vermicompost. Mycologia 97: 33-44.
    • (2005) Mycologia , vol.97 , pp. 33-44
    • Anastasi, A.1    Varese, G.C.2    Filipello Marchisio, V.3
  • 3
    • 6544275960 scopus 로고    scopus 로고
    • Mycological control and surveillance of biological waste and compost
    • Beffa T, Staib F, Fischer JL et al. (1998) Mycological control and surveillance of biological waste and compost. Med Mycol 36: 137-145.
    • (1998) Med Mycol , vol.36 , pp. 137-145
    • Beffa, T.1    Staib, F.2    Fischer, J.L.3
  • 4
    • 77954336858 scopus 로고    scopus 로고
    • ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
    • Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P & Kauserud H (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol 10: 189.
    • (2010) BMC Microbiol , vol.10 , pp. 189
    • Bellemain, E.1    Carlsen, T.2    Brochmann, C.3    Coissac, E.4    Taberlet, P.5    Kauserud, H.6
  • 6
    • 71149087337 scopus 로고    scopus 로고
    • Identification of fungi associated with municipal compost using DNA-based techniques
    • Bonito G, Isikhuemhen OS & Vilgalys R (2010) Identification of fungi associated with municipal compost using DNA-based techniques. Bioresour Technol 101: 1021-1027.
    • (2010) Bioresour Technol , vol.101 , pp. 1021-1027
    • Bonito, G.1    Isikhuemhen, O.S.2    Vilgalys, R.3
  • 7
    • 70349482733 scopus 로고    scopus 로고
    • 454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
    • Buee M, Reich M, Murat C, Morin E, Nilsson RH, Uroz S & Martin F (2009) 454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol 184: 449-456.
    • (2009) New Phytol , vol.184 , pp. 449-456
    • Buee, M.1    Reich, M.2    Murat, C.3    Morin, E.4    Nilsson, R.H.5    Uroz, S.6    Martin, F.7
  • 8
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 9
    • 0000525112 scopus 로고
    • The fungi of wheat straw compost: I. Ecological studies
    • Chang Y & Hudson HJ (1967) The fungi of wheat straw compost: I. Ecological studies. Trans Br Mycol Soc 50: 649-666.
    • (1967) Trans Br Mycol Soc , vol.50 , pp. 649-666
    • Chang, Y.1    Hudson, H.J.2
  • 10
    • 0031940084 scopus 로고    scopus 로고
    • The influence of yeast on thermophilic composting of food waste
    • Choi M & Park Y (1998) The influence of yeast on thermophilic composting of food waste. Lett Appl Microbiol 26: 175-178.
    • (1998) Lett Appl Microbiol , vol.26 , pp. 175-178
    • Choi, M.1    Park, Y.2
  • 11
    • 84884242166 scopus 로고    scopus 로고
    • Insights into fungal communities in composts revealed by 454-pyrosequencing: implications for human health and safety
    • De Gannes V, Eudoxie G & Hickey WJ (2013a) Insights into fungal communities in composts revealed by 454-pyrosequencing: implications for human health and safety. Front Microbiol 4: 164.
    • (2013) Front Microbiol , vol.4 , pp. 164
    • De Gannes, V.1    Eudoxie, G.2    Hickey, W.J.3
  • 12
    • 84874723319 scopus 로고    scopus 로고
    • Prokaryotic successions and diversity in composts as revealed by 454-pyrosequencing
    • De Gannes V, Eudoxie G & Hickey WJ (2013b) Prokaryotic successions and diversity in composts as revealed by 454-pyrosequencing. Bioresour Technol 133: 573-580.
    • (2013) Bioresour Technol , vol.133 , pp. 573-580
    • De Gannes, V.1    Eudoxie, G.2    Hickey, W.J.3
  • 13
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 17
    • 0016650851 scopus 로고
    • Microbiology of municipal solid waste composting
    • Finstein MS & Morris ML (1975) Microbiology of municipal solid waste composting. Adv Appl Microbiol 19: 113-151.
    • (1975) Adv Appl Microbiol , vol.19 , pp. 113-151
    • Finstein, M.S.1    Morris, M.L.2
  • 18
    • 11144310730 scopus 로고    scopus 로고
    • Molecular characterization of fungal, community dynamics in the initial stages of composting
    • Hansgate AM, Schloss PD, Hay AG & Walker LP (2005) Molecular characterization of fungal, community dynamics in the initial stages of composting. FEMS Microbiol Ecol 51: 209-214.
    • (2005) FEMS Microbiol Ecol , vol.51 , pp. 209-214
    • Hansgate, A.M.1    Schloss, P.D.2    Hay, A.G.3    Walker, L.P.4
  • 19
    • 74049144499 scopus 로고    scopus 로고
    • Determination of fungal succession during municipal solid waste composting using a cloning-based analysis
    • Hultman J, Vasara T, Partanen P et al. (2009) Determination of fungal succession during municipal solid waste composting using a cloning-based analysis. J Appl Microbiol 108: 472-487.
    • (2009) J Appl Microbiol , vol.108 , pp. 472-487
    • Hultman, J.1    Vasara, T.2    Partanen, P.3
  • 20
    • 84866409375 scopus 로고    scopus 로고
    • Utility of molecular tools in monitoring large scale composting
    • (Insam H, Franke-Whittle I & Goberna M, eds) Springer, Berlin, Heidelberg.
    • Hultman J, Kurola J, Rainisalo A, Kontro M & Romantschuk M (2010) Utility of molecular tools in monitoring large scale composting. Microbes at Work (Insam H, Franke-Whittle I & Goberna M, eds), pp. 135-151. Springer, Berlin, Heidelberg.
    • (2010) Microbes at Work , pp. 135-151
    • Hultman, J.1    Kurola, J.2    Rainisalo, A.3    Kontro, M.4    Romantschuk, M.5
  • 21
    • 0038725007 scopus 로고    scopus 로고
    • Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis
    • Ishii K & Takii S (2003) Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis. J Appl Microbiol 95: 109-119.
    • (2003) J Appl Microbiol , vol.95 , pp. 109-119
    • Ishii, K.1    Takii, S.2
  • 23
    • 70349493057 scopus 로고    scopus 로고
    • Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
    • Jumpponen A & Jones KL (2009) Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytol 184: 438-448.
    • (2009) New Phytol , vol.184 , pp. 438-448
    • Jumpponen, A.1    Jones, K.L.2
  • 24
    • 0015664111 scopus 로고
    • Thermophilic fungi in a municipal waste compost system
    • Kane BE & Mullins JT (1973) Thermophilic fungi in a municipal waste compost system. Mycologia 65: 1087-1100.
    • (1973) Mycologia , vol.65 , pp. 1087-1100
    • Kane, B.E.1    Mullins, J.T.2
  • 25
    • 84879205657 scopus 로고    scopus 로고
    • Fungi in a controlled compost system with special emphasis on the thermophilic fungi. International Symposium on Composting and Use of Composted Materials for Horticulture
    • Klamer M & Sochting U (1998) Fungi in a controlled compost system with special emphasis on the thermophilic fungi. International Symposium on Composting and Use of Composted Materials for Horticulture 405-413.
    • (1998) , pp. 405-413
    • Klamer, M.1    Sochting, U.2
  • 26
    • 77955295116 scopus 로고    scopus 로고
    • Candida tropicalis: its prevalence, pathogenicity and increasing resistance to fluconazole
    • Kothavade RJ, Kura MM, Valand AG & Panthaki MH (2010) Candida tropicalis: its prevalence, pathogenicity and increasing resistance to fluconazole. J Med Microbiol 59: 873-880.
    • (2010) J Med Microbiol , vol.59 , pp. 873-880
    • Kothavade, R.J.1    Kura, M.M.2    Valand, A.G.3    Panthaki, M.H.4
  • 27
    • 79952666403 scopus 로고    scopus 로고
    • Composting of municipal solid waste
    • Kumar S (2011) Composting of municipal solid waste. Crit Rev Biotechnol 31: 112-136.
    • (2011) Crit Rev Biotechnol , vol.31 , pp. 112-136
    • Kumar, S.1
  • 32
    • 79958099242 scopus 로고    scopus 로고
    • Environmental benefits of new waste management facilities in Manchester, UK
    • Mannall C & Chinn M (2011) Environmental benefits of new waste management facilities in Manchester, UK. Proc Inst Civil Eng-Municipal Eng 164: 117-126.
    • (2011) Proc Inst Civil Eng-Municipal Eng , vol.164 , pp. 117-126
    • Mannall, C.1    Chinn, M.2
  • 33
    • 0017741538 scopus 로고
    • Occurrence of Aspergillus fumigatus during composting of sewage sludge
    • Millner P, Marsh P, Snowden R & Parr J (1977) Occurrence of Aspergillus fumigatus during composting of sewage sludge. Appl Environ Microbiol 34: 765-772.
    • (1977) Appl Environ Microbiol , vol.34 , pp. 765-772
    • Millner, P.1    Marsh, P.2    Snowden, R.3    Parr, J.4
  • 35
    • 84859430607 scopus 로고    scopus 로고
    • A molecular phylogeny of thermophilic fungi
    • Morgenstern I, Powlowski J, Ishmael N et al. (2012) A molecular phylogeny of thermophilic fungi. Fungal Biol 116: 489-502.
    • (2012) Fungal Biol , vol.116 , pp. 489-502
    • Morgenstern, I.1    Powlowski, J.2    Ishmael, N.3
  • 37
    • 65349119374 scopus 로고    scopus 로고
    • Characterization of bacterial and fungal communities in composted biosolids over a 2 year period using denaturing gradient gel electrophoresis
    • Novinscak A, DeCoste NJ, Surette C & Filion M (2009) Characterization of bacterial and fungal communities in composted biosolids over a 2 year period using denaturing gradient gel electrophoresis. Can J Microbiol 55: 375-387.
    • (2009) Can J Microbiol , vol.55 , pp. 375-387
    • Novinscak, A.1    DeCoste, N.J.2    Surette, C.3    Filion, M.4
  • 38
    • 33947634712 scopus 로고    scopus 로고
    • Candida rugosa, an emerging fungal pathogen with resistance to azoles: geographic and temporal trends from the ARTEMIS DISK antifungal surveillance program
    • Pfaller MA, Diekema DJ, Colombo AL, Kibbler C, Ng KP, Gibbs DL & Newell VA (2006) Candida rugosa, an emerging fungal pathogen with resistance to azoles: geographic and temporal trends from the ARTEMIS DISK antifungal surveillance program. J Clin Microbiol 44: 3578-3582.
    • (2006) J Clin Microbiol , vol.44 , pp. 3578-3582
    • Pfaller, M.A.1    Diekema, D.J.2    Colombo, A.L.3    Kibbler, C.4    Ng, K.P.5    Gibbs, D.L.6    Newell, V.A.7
  • 39
    • 38949166771 scopus 로고    scopus 로고
    • Candida krusei, a multidrug-resistant opportunistic fungal pathogen: geographic and temporal trends from the ARTEMIS DISK Antifungal Surveillance Program, 2001 to 2005
    • Pfaller MA, Diekema DJ, Gibbs DL et al. (2008) Candida krusei, a multidrug-resistant opportunistic fungal pathogen: geographic and temporal trends from the ARTEMIS DISK Antifungal Surveillance Program, 2001 to 2005. J Clin Microbiol 46: 515-521.
    • (2008) J Clin Microbiol , vol.46 , pp. 515-521
    • Pfaller, M.A.1    Diekema, D.J.2    Gibbs, D.L.3
  • 40
    • 77956304094 scopus 로고    scopus 로고
    • Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
    • Reeder J & Knight R (2010) Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat Methods 7: 668-669.
    • (2010) Nat Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 41
    • 0345767374 scopus 로고    scopus 로고
    • A survey of bacteria and fungi occurring during composting and self-heating processes
    • Ryckeboer J, Mergaert J, Vaes K et al. (2003) A survey of bacteria and fungi occurring during composting and self-heating processes. Ann Microbiol 53: 349-410.
    • (2003) Ann Microbiol , vol.53 , pp. 349-410
    • Ryckeboer, J.1    Mergaert, J.2    Vaes, K.3
  • 42
    • 66749144153 scopus 로고    scopus 로고
    • Biosolids composting
    • (Wang L, Shammas NK & Hung Y-T, eds) Humana Press, Totowa, NJ.
    • Shammas NK & Wang LK (2007) Biosolids composting. Biosolids Treatment Processes, Vol. 6 (Wang L, Shammas NK & Hung Y-T, eds), pp. 645-687. Humana Press, Totowa, NJ.
    • (2007) Biosolids Treatment Processes , vol.6 , pp. 645-687
    • Shammas, N.K.1    Wang, L.K.2
  • 43
    • 34648829209 scopus 로고    scopus 로고
    • Managing the potential public health risks from bioaerosol liberation at commercial composting sites in the UK: an analysis of the evidence base
    • Sykes P, Jones K & Wildsmith JD (2007) Managing the potential public health risks from bioaerosol liberation at commercial composting sites in the UK: an analysis of the evidence base. Resour Conserv Recycl 52: 410-424.
    • (2007) Resour Conserv Recycl , vol.52 , pp. 410-424
    • Sykes, P.1    Jones, K.2    Wildsmith, J.D.3
  • 44
    • 62549083826 scopus 로고    scopus 로고
    • DGGE and T-RFLP analysis of bacterial succession during mushroom compost production and sequence-aided T-RFLP profile of mature compost
    • Szekely A, Sipos R, Berta B, Vajna B, Hajdu C & Marialigeti K (2009) DGGE and T-RFLP analysis of bacterial succession during mushroom compost production and sequence-aided T-RFLP profile of mature compost. Microb Ecol 57: 522-533.
    • (2009) Microb Ecol , vol.57 , pp. 522-533
    • Szekely, A.1    Sipos, R.2    Berta, B.3    Vajna, B.4    Hajdu, C.5    Marialigeti, K.6
  • 45
    • 0015402568 scopus 로고
    • The upper temperature limit for eukaryotic organisms
    • Tansey MR & Brock TD (1972) The upper temperature limit for eukaryotic organisms. P Natl Acad Sci USA 69: 2426-2428.
    • (1972) P Natl Acad Sci USA , vol.69 , pp. 2426-2428
    • Tansey, M.R.1    Brock, T.D.2
  • 46
    • 77956283658 scopus 로고    scopus 로고
    • 454 pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
    • Tedersoo L, Nilsson RH, Abarenkov K et al. (2010) 454 pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol 188: 291-301.
    • (2010) New Phytol , vol.188 , pp. 291-301
    • Tedersoo, L.1    Nilsson, R.H.2    Abarenkov, K.3
  • 47
    • 34250091632 scopus 로고
    • Canoco - an Extension of Decorana to analyze species-environment relationships
    • Terbraak CJF (1988) Canoco - an Extension of Decorana to analyze species-environment relationships. Vegetatio 75: 159-160.
    • (1988) Vegetatio , vol.75 , pp. 159-160
    • Terbraak, C.J.F.1
  • 48
    • 29544444808 scopus 로고    scopus 로고
    • Microbial community dynamics in manure composts based on 16S and 18S rDNA T-RFLP profiles
    • Tiquia SM (2005) Microbial community dynamics in manure composts based on 16S and 18S rDNA T-RFLP profiles. Environ Technol 26: 1101-1113.
    • (2005) Environ Technol , vol.26 , pp. 1101-1113
    • Tiquia, S.M.1
  • 49
    • 84899936530 scopus 로고    scopus 로고
    • U. S. Environmental Protection Agency Municipal solid waste in the United States: 2011 Facts and Figures. EPA530-R-13-001.
    • U. S. Environmental Protection Agency (2013) Municipal solid waste in the United States: 2011 Facts and Figures. EPA530-R-13-001.
    • (2013)
  • 50
    • 51249194348 scopus 로고
    • Über das Vorkommen und Verhalten von Schimmelpilzen bei der Kompostierung städtischer Abfallstoffe
    • Von Klopotek A (1962) Über das Vorkommen und Verhalten von Schimmelpilzen bei der Kompostierung städtischer Abfallstoffe. Antonie Van Leeuwenhoek 28: 141-160.
    • (1962) Antonie Van Leeuwenhoek , vol.28 , pp. 141-160
    • Von Klopotek, A.1


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