-
1
-
-
56649102556
-
Anhydrobiosis: The extreme limit of desiccation tolerance
-
Rebecchi L, Altiero T, Guidetti R (2007) Anhydrobiosis: the extreme limit of desiccation tolerance. ISJ 4: 65-81.
-
(2007)
ISJ
, vol.4
, pp. 65-81
-
-
Rebecchi, L.1
Altiero, T.2
Guidetti, R.3
-
2
-
-
84940219108
-
A short review on tardigrades - Some lesser known taxa of polyextremophilic invertebrates
-
Gagyi-Palffy A, Stoian LC (2011) A short review on tardigrades - some lesser known taxa of polyextremophilic invertebrates. ELBA Bioflux 3(1): 13-26.
-
(2011)
ELBA Bioflux
, vol.3
, Issue.1
, pp. 13-26
-
-
Gagyi-Palffy, A.1
Stoian, L.C.2
-
3
-
-
80053167952
-
MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda
-
Campbell LI, Rota-Stabelli O, Edgecombe GD, Marchioro T, Longhorn SJ, et al. (2011) MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda. PNAS 108: 15920-15924.
-
(2011)
PNAS
, vol.108
, pp. 15920-15924
-
-
Campbell, L.I.1
Rota-Stabelli, O.2
Edgecombe, G.D.3
Marchioro, T.4
Longhorn, S.J.5
-
4
-
-
51049124478
-
Tardigrades survive exposure to space in low earth orbit
-
Jönsson KI, Rabbow E, Schill RO, Harms-Ringdahl M, Rettberg P (2008) Tardigrades survive exposure to space in low earth orbit. Currt Biol 18: R729-R731.
-
(2008)
Currt Biol
, vol.18
-
-
Jönsson, K.I.1
Rabbow, E.2
Schill, R.O.3
Harms-Ringdahl, M.4
Rettberg, P.5
-
5
-
-
50949108463
-
Effect of high hydrostatic pressure on to life of the tiny animal tardigrade
-
Ono F, Saigusa M, Uozumi T, Matsushima Y, Ikeda H, et al. (2008) Effect of high hydrostatic pressure on to life of the tiny animal tardigrade. J. Phys Chem, Solids 69: 2297-2300.
-
(2008)
J. Phys Chem, Solids
, vol.69
, pp. 2297-2300
-
-
Ono, F.1
Saigusa, M.2
Uozumi, T.3
Matsushima, Y.4
Ikeda, H.5
-
6
-
-
70449822092
-
High-temperature tolerance in anhydrobiotic tardigrades is limited by glass transition
-
Hengherr S, Worland MR, Reuner A, Brümmer F, Schill RO (2009) High-temperature tolerance in anhydrobiotic tardigrades is limited by glass transition. Physiol Biochem Zool 82: 749-755.
-
(2009)
Physiol Biochem Zool
, vol.82
, pp. 749-755
-
-
Hengherr, S.1
Worland, M.R.2
Reuner, A.3
Brümmer, F.4
Schill, R.O.5
-
7
-
-
79957496449
-
Anhydrobiosis in tardigrades - The last decade
-
Wełnicz W, Grohme MA, Kaczmarek Ł, Schill RO, Frohme M (2011) Anhydrobiosis in tardigrades - the last decade. J Insect Physiol 57: 577-583.
-
(2011)
J Insect Physiol
, vol.57
, pp. 577-583
-
-
Wełnicz, W.1
Grohme, M.A.2
Kaczmarek, Ł.3
Schill, R.O.4
Frohme, M.5
-
8
-
-
80053329549
-
Survival in extreme environments - On the current knowledge of adaptations in tardigrades
-
Oxf
-
Møbjerg N, Halberg KA, Jørgensen A, Persson D, Bjørn M, et al. (2011) Survival in extreme environments - on the current knowledge of adaptations in tardigrades. Acta Physiol (Oxf) 202: 409-420.
-
(2011)
Acta Physiol
, vol.202
, pp. 409-420
-
-
Møbjerg, N.1
Halberg, K.A.2
Jørgensen, A.3
Persson, D.4
Bjørn, M.5
-
9
-
-
30744459861
-
Desiccation tolerance in encysted embryos of the animal extremophile, Artemia
-
Clegg JS (2005) Desiccation tolerance in encysted embryos of the animal extremophile, Artemia. Integ Comp Biol 45: 715-724.
-
(2005)
Integ Comp Biol
, vol.45
, pp. 715-724
-
-
Clegg, J.S.1
-
11
-
-
85032068559
-
Sugars and desiccation tolerance in seeds
-
Koster KL, Leopold AC (1988) Sugars and desiccation tolerance in seeds. Plant Physiol 88(3): 829-832.
-
(1988)
Plant Physiol
, vol.88
, Issue.3
, pp. 829-832
-
-
Koster, K.L.1
Leopold, A.C.2
-
13
-
-
0037901860
-
Genomic DNA of Nostoc commune (Cyanobacteria) becomes covalently modified during long-term (decades) desiccation but is protected from oxidative damage and degradation
-
DOI 10.1093/nar/gkg404
-
Shirkey B, McMaster NJ, Smith SC, Wright DJ, Rodriguez H, et al. (2003) Genomic DNA of nostoc commune (Cyanobacteria) becomes covalently modified during long-term (decades) desiccation but is protected from oxidative damage and degradation. Nucleic Acids Res 31: 2995-3005. (Pubitemid 37441757)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.12
, pp. 2995-3005
-
-
Shirkey, B.1
McMaster, N.J.2
Smith, S.C.3
Wright, D.J.4
Rodriguez, H.5
Jaruga, P.6
Birincioglu, M.7
Helm, R.F.8
Potts, M.9
-
14
-
-
0142200333
-
Anhydrobiosis without trehalose in bdelloid rotifers
-
DOI 10.1016/S0014-5793(03)01062-7
-
Lapinski J, Tunnacliffe A (2003) Anhydrobiosis without trehalose in bdelloid rotifers. FEBS Letters 553: 387-390. (Pubitemid 37315636)
-
(2003)
FEBS Letters
, vol.553
, Issue.3
, pp. 387-390
-
-
Lapinski, J.1
Tunnacliffe, A.2
-
15
-
-
37849009975
-
Trehalose and anhydrobiosis in tardigrades - Evidence for divergence in response to dehydration
-
Hengherr S, Heyer AG, Köhler HR, Schill RO (2008) Trehalose and anhydrobiosis in tardigrades - evidence for divergence in response to dehydration. FEBS J 275: 281-288.
-
(2008)
FEBS J
, vol.275
, pp. 281-288
-
-
Hengherr, S.1
Heyer, A.G.2
Köhler, H.R.3
Schill, R.O.4
-
16
-
-
33845776522
-
Radiation tolerance in the tardigrade Milnesium tardigradum
-
DOI 10.1080/09553000600972956, PII U402P62V571LRP02
-
Horikawa DD, Sakashita T, Katagiri C, Watanabe M, Kikawada T, et al. (2006) Radiation tolerance in the tardigrade Milnersium tardigradum. Int J Radiat Biol 82: 843-848. (Pubitemid 46009574)
-
(2006)
International Journal of Radiation Biology
, vol.82
, Issue.12
, pp. 843-848
-
-
Horikawa, D.D.1
Sakashita, T.2
Katagiri, C.3
Watanabe, M.4
Kikawada, T.5
Nakahara, Y.6
Hamada, N.7
Wada, S.8
Funayama, T.9
Higashi, S.10
Kobayashi, Y.11
Okuda, T.12
Kuwabara, M.13
-
17
-
-
79957439281
-
Trehalose in three species of desiccation tolerant tardigrades
-
Jönsson KI, Persson O (2010) Trehalose in three species of desiccation tolerant tardigrades. The Open Zoology Journal 3: 1-5.
-
(2010)
The Open Zoology Journal
, vol.3
, pp. 1-5
-
-
Jönsson, K.I.1
Persson, O.2
-
18
-
-
84858741326
-
Anhydrobiosis in bacteria: From physiology to applications
-
García AH (2011) Anhydrobiosis in bacteria: from physiology to applications. J Biosci 36: 939-950.
-
(2011)
J Biosci
, vol.36
, pp. 939-950
-
-
García, A.H.1
-
19
-
-
1942536792
-
Gene expression in the cyanobacterium Anabaena sp. PCC7120 under desiccation
-
DOI 10.1007/s00248-003-1043-6
-
Katoh H, Asthana RK, Ohmori M (2004) Gene expression in the cyanobacterium Anabaena sp. PCC7120 under desiccation. Microbiol Ecol 47: 164-174. (Pubitemid 38600779)
-
(2004)
Microbial Ecology
, vol.47
, Issue.2
, pp. 164-174
-
-
Katoh, H.1
Asthana, R.K.2
Ohmori, M.3
-
20
-
-
77955661594
-
Heat shock proteins and resistance to desiccation in congeneric land snails
-
Mizrahi T, Heller J, Goldenberg S, Arad Z (2010) Heat shock proteins and resistance to desiccation in congeneric land snails. Cell Stress Chaperones 15: 351-363.
-
(2010)
Cell Stress Chaperones
, vol.15
, pp. 351-363
-
-
Mizrahi, T.1
Heller, J.2
Goldenberg, S.3
Arad, Z.4
-
21
-
-
84873738160
-
Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis
-
Gechev TS, Benina M, Obata T, Tohge T, Sujeeth N, et al. (2013) Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis. CMLS 70: 689-709.
-
(2013)
CMLS
, vol.70
, pp. 689-709
-
-
Gechev, T.S.1
Benina, M.2
Obata, T.3
Tohge, T.4
Sujeeth, N.5
-
22
-
-
78149247967
-
Identification of anhydrobiosis-related genes from an expressed sequence tag database in the cryptobiotic midge Polypedilum vanderplanki (diptera; chironomidae)
-
Cornette R, Kanamori Y, Watanabe M, Nakahara Y, Gusev O, et al. (2010) Identification of anhydrobiosis-related genes from an expressed sequence tag database in the cryptobiotic midge Polypedilum vanderplanki (diptera; chironomidae). J Biol Chem 285: 35889-35899.
-
(2010)
J Biol Chem
, vol.285
, pp. 35889-35899
-
-
Cornette, R.1
Kanamori, Y.2
Watanabe, M.3
Nakahara, Y.4
Gusev, O.5
-
23
-
-
33847312694
-
Induction of Hsp70 by desiccation, ionizing radiation and heat-shock in the eutardigrade Richtersius coronifer
-
Jönsson KI, Schill RO (2007) Induction of Hsp70 by desiccation, ionizing radiation and heat-shock in the eutardigrade Richtersius coronifer. Comp Biochem Physiol Part B 146: 456-460.
-
(2007)
Comp Biochem Physiol Part B
, vol.146
, pp. 456-460
-
-
Jönsson, K.I.1
Schill, R.O.2
-
24
-
-
82555174721
-
Heat shock proteins in encysted and anhydrobiotic eutardigrades
-
Altiero T, Guidetti R, Boschini D, Rebecchi L (2012) Heat shock proteins in encysted and anhydrobiotic eutardigrades. J Limnol 71(1): 211-215.
-
(2012)
J Limnol
, vol.71
, Issue.1
, pp. 211-215
-
-
Altiero, T.1
Guidetti, R.2
Boschini, D.3
Rebecchi, L.4
-
25
-
-
2442540307
-
Stress gene (hsp70) sequences and quantitative expression in Milnesium tardigradum (Tardigrada) during active and cryptobiotic stages
-
DOI 10.1242/jeb.00935
-
Schill RO, Steinbrück G, Köhler HR (2004) Stress gene (hsp70) sequences and quantitative expression in Milnesium tardigradum (Tardigrada) during active and cryptobiotic stages. J Exp Biol 207: 1607-1613. (Pubitemid 38630490)
-
(2004)
Journal of Experimental Biology
, vol.207
, Issue.10
, pp. 1607-1613
-
-
Schill, R.O.1
Steinbruck, G.H.B.2
Kohler, H.-R.3
-
26
-
-
77955664570
-
Stress response in tardigrades: Differential gene expression of molecular chaperones
-
Reuner A, Hengherr S, Mali B, Förster F, Arndt D, et al. (2009) Stress response in tardigrades: differential gene expression of molecular chaperones. Cell Stress and Chaperones 15: 423-430.
-
(2009)
Cell Stress and Chaperones
, vol.15
, pp. 423-430
-
-
Reuner, A.1
Hengherr, S.2
Mali, B.3
Förster, F.4
Arndt, D.5
-
27
-
-
4143088129
-
Dehydration-specific induction of hydrophilic protein genes in the anhydrobiotic nematode Aphelenchus avenae
-
DOI 10.1128/EC.3.4.966-975.2004
-
Browne JA, Dolan KM, Tyson T, Goyal K, Tunnacliffe A, et al. (2004) Dehydration-specific induction of hydrophilic protein genes in the anhydrobiotic nematode Aphelenchus avenae. Eukaryotic Cell 3: 966-975. (Pubitemid 39098872)
-
(2004)
Eukaryotic Cell
, vol.3
, Issue.4
, pp. 966-975
-
-
Browne, J.A.1
Dolan, K.M.2
Tyson, T.3
Goyal, K.4
Tunnacliffe, A.5
Burnell, A.M.6
-
28
-
-
30744478923
-
Molecular anhydrobiology: Identifying molecules implicated in invertebrate anhydrobiosis
-
DOI 10.1093/icb/45.5.702
-
Goyal K, Walton LJ, Browne JA, Burnell AM, Tunnacliffe A (2005) Molecular anhydrobiosis: identifying molecules implicated in invertebrate anhydrobiosis. Integr Comp Biol 45: 702-709. (Pubitemid 43098202)
-
(2005)
Integrative and Comparative Biology
, vol.45
, Issue.5
, pp. 702-709
-
-
Goyal, K.1
Walton, L.J.2
Browne, J.A.3
Burnell, A.M.4
Tunnacliffe, A.5
-
29
-
-
64849099377
-
Desiccation survival in an Antarctic nematode: Molecular analysis using expressed sequenced tags
-
Adhikari BN, Wall DH, Adams BJ (2009) Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags. BMC Genomics 10: 69.
-
(2009)
BMC Genomics
, vol.10
, pp. 69
-
-
Adhikari, B.N.1
Wall, D.H.2
Adams, B.J.3
-
30
-
-
24144463133
-
A putative LEA protein, but no trehalose, is present in anhydrobiotic bdelloid rotifers
-
DOI 10.1007/s10750-005-4239-6
-
Tunnacliffe A, Lapinski J, McGree B (2005) A putative LEA protein, but no trehalose, is present in anhydrobiotic bdelloid rotifers. Hydrobiologia 546: 315-321. (Pubitemid 41239968)
-
(2005)
Hydrobiologia
, vol.546
, Issue.1
, pp. 315-321
-
-
Tunnacliffe, A.1
Lapinski, J.2
McGee, B.3
-
31
-
-
70449701929
-
Tardigrade workbench: Comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades
-
Förster F, Liang C, Shkumatov A, Beisser D, Engelmann JC, et al. (2009) Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades. BMC genomics 10: 469.
-
(2009)
BMC Genomics
, vol.10
, pp. 469
-
-
Förster, F.1
Liang, C.2
Shkumatov, A.3
Beisser, D.4
Engelmann, J.C.5
-
32
-
-
77949838776
-
Proteomic analysis of tardigrades: Towards a better understanding of molecular mechanisms by anhydrobiotic organisms
-
Schokraie E, Hotz-Wagenblatt A, Warnken U, Mali B, Frohme M, et al. (2010) Proteomic analysis of tardigrades: towards a better understanding of molecular mechanisms by anhydrobiotic organisms. PloS One 5: e9502.
-
(2010)
PloS One
, vol.5
-
-
Schokraie, E.1
Hotz-Wagenblatt, A.2
Warnken, U.3
Mali, B.4
Frohme, M.5
-
33
-
-
84860878997
-
Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations
-
Förster F, Beisser D, Grohme MA, Liang C, Mali B, et al. (2012) Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations. Bioinform Biol Insights 6: 69-96.
-
(2012)
Bioinform Biol Insights
, vol.6
, pp. 69-96
-
-
Förster, F.1
Beisser, D.2
Grohme, M.A.3
Liang, C.4
Mali, B.5
-
34
-
-
84865455749
-
Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade
-
Yamaguchi A, Tanaka S, Yamaguchi S, Kuwahara H, Takamura C, et al. (2012) Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade. PLoS One 7(8): e44209.
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Yamaguchi, A.1
Tanaka, S.2
Yamaguchi, S.3
Kuwahara, H.4
Takamura, C.5
-
35
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature methods 5(7): 621-628. (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
36
-
-
77951159431
-
Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer
-
Mali B, Grohme MA, Förster F, Dandekar T, Schnölzer M, et al. (2010) Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer. BMC Genomics 11: 168.
-
(2010)
BMC Genomics
, vol.11
, pp. 168
-
-
Mali, B.1
Grohme, M.A.2
Förster, F.3
Dandekar, T.4
Schnölzer, M.5
-
37
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker ML (2010) Sequencing technologies - the next generation. Nat Rev Genet. 11: 31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
38
-
-
79959212998
-
Landscape of next-generation sequencing technologies
-
Niedringhaus TP, Milanova D, Kerby MB, Snyder MP, Barron AE (2011) Landscape of next-generation sequencing technologies. Anal Chem 83: 4327-4341.
-
(2011)
Anal Chem
, vol.83
, pp. 4327-4341
-
-
Niedringhaus, T.P.1
Milanova, D.2
Kerby, M.B.3
Snyder, M.P.4
Barron, A.E.5
-
39
-
-
77957926979
-
Comparing de novo assemblers for 454 transcriptome data
-
Kumar S, Blaxter ML (2010) Comparing de novo assemblers for 454 transcriptome data. BMC Genomics 11: 571.
-
(2010)
BMC Genomics
, vol.11
, pp. 571
-
-
Kumar, S.1
Blaxter, M.L.2
-
40
-
-
84870888110
-
Evaluating de Bruijn graph assemblers on 454 transcriptomic data
-
Ren X, Liu T, Dong J, Sun L, Yang J, et al. (2012) Evaluating de Bruijn graph assemblers on 454 transcriptomic data. PloS One 7: e51188.
-
(2012)
PloS One
, vol.7
-
-
Ren, X.1
Liu, T.2
Dong, J.3
Sun, L.4
Yang, J.5
-
41
-
-
3042615882
-
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
-
DOI 10.1101/gr.1917404
-
Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Müller WEG, et al. (2004) Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res 14: 1147-1159. (Pubitemid 38811551)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1147-1159
-
-
Chevreux, B.1
Pfisterer, T.2
Drescher, B.3
Driesel, A.J.4
Muller, W.E.G.5
Wetter, T.6
Suhai, S.7
-
42
-
-
66449136667
-
ABySS: A parallel assembler for short read sequence data
-
Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, et al. (2009) ABySS: a parallel assembler for short read sequence data. Genome Res 19: 1117-1123.
-
(2009)
Genome Res
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.M.5
-
43
-
-
77957758142
-
Reptile: Representative tiling for short read error correction
-
Yang X, Dorman KS, Aluru S (2010) Reptile: Representative tiling for short read error correction. Bioinformatics 26: 2526-2533.
-
(2010)
Bioinformatics
, vol.26
, pp. 2526-2533
-
-
Yang, X.1
Dorman, K.S.2
Aluru, S.3
-
44
-
-
77952857079
-
Correction of sequencing errors in a mixed set of reads
-
Salmela L (2010) Correction of sequencing errors in a mixed set of reads. Bioinformatics 26: 1284-1290.
-
(2010)
Bioinformatics
, vol.26
, pp. 1284-1290
-
-
Salmela, L.1
-
45
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
Li W, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659. (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
46
-
-
0037460985
-
TIGR gene indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
-
DOI 10.1093/bioinformatics/btg034
-
Pertea G, Huang X, Liang F, Pertea G, Huang X, et al. (2003) TIGR gene indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19(5): 651-652. (Pubitemid 36417060)
-
(2003)
Bioinformatics
, vol.19
, Issue.5
, pp. 651-652
-
-
Pertea, G.1
Huang, X.2
Liang, F.3
Antonescu, V.4
Sultana, R.5
Karamycheva, S.6
Lee, Y.7
White, J.8
Cheung, F.9
Parvizi, B.10
Tsai, J.11
Quackenbush, J.12
-
47
-
-
33748700612
-
RBR: Library-less repeat detection for ESTs
-
DOI 10.1093/bioinformatics/btl368
-
Malde K, Schneeberger K, Coward E, Jonassen I (2006) RBR: library-less repeat detection for ESTs. Bioinformatics 22: 2232-2236. (Pubitemid 44390877)
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2232-2236
-
-
Malde, K.1
Schneeberger, K.2
Coward, E.3
Jonassen, I.4
-
48
-
-
34249848751
-
CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
-
DOI 10.1093/bioinformatics/btm071
-
Parra G, Bradnam K, Korf I (2007) CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics, 23: 1061-1067. (Pubitemid 47050556)
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
49
-
-
84875391572
-
Ensembl 2013
-
Flicek P, Ahmed I, Amode MR, Barrell D, Beal K, et al. (2013) Ensembl 2013. Nucleic Acids Research 41: D48-D55.
-
(2013)
Nucleic Acids Research
, vol.41
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
Barrell, D.4
Beal, K.5
-
50
-
-
58549121169
-
Assessing the gene space in draft genomes
-
Parra G, Bradnam K, Ning Z, Keane T, Korf I (2009) Assessing the gene space in draft genomes. Nucleic Acids Research 37(1): 298-297.
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.1
, pp. 298-1297
-
-
Parra, G.1
Bradnam, K.2
Ning, Z.3
Keane, T.4
Korf, I.5
-
51
-
-
84875512075
-
De Novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana
-
Nakasugi K, Crowhusrt RN, Bally J, Wood CC, Hellens RP, et al. (2013) De Novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana. PLoS One 8(3): e59534.
-
(2013)
PLoS One
, vol.8
, Issue.3
-
-
Nakasugi, K.1
Crowhusrt, R.N.2
Bally, J.3
Wood, C.C.4
Hellens, R.P.5
-
53
-
-
84861533252
-
Transcriptome of the adult female malaria mosquito vector Anopheles albimanus
-
Martínez-Barnetche J, Gómez-Barreto RE, Ovilla-Muñoz M, Téllez-Sosa J, López DE, et al. (2012) Transcriptome of the adult female malaria mosquito vector Anopheles albimanus. BMC Genomics 13: 207.
-
(2012)
BMC Genomics
, vol.13
, pp. 207
-
-
Martínez-Barnetche, J.1
Gómez-Barreto, R.E.2
Ovilla-Muñoz, M.3
Téllez-Sosa, J.4
López, D.E.5
-
54
-
-
84876975995
-
A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings
-
Müller T, Ensminger I, Schmid KJ (2012) A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings. BMC Genomics 13: 673.
-
(2012)
BMC Genomics
, vol.13
, pp. 673
-
-
Müller, T.1
Ensminger, I.2
Schmid, K.J.3
-
55
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
DOI 10.1093/nar/gkn176
-
Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, et al. (2008) High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 36(10): 3420-3435. (Pubitemid 351859009)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.10
, pp. 3420-3435
-
-
Gotz, S.1
Garcia-Gomez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
Nueda, M.J.6
Robles, M.7
Talon, M.8
Dopazo, J.9
Conesa, A.10
-
56
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, et al. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41: D590-596.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
-
57
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann B (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 31: 365-370.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
-
58
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
59
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 21: 936-939.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
60
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li H, Ruan J, Durbin R (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
61
-
-
77949507153
-
RNA-Seq gene expression estimation with read mapping uncertainty
-
Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN (2010) RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics 26: 493-500.
-
(2010)
Bioinformatics
, vol.26
, pp. 493-500
-
-
Li, B.1
Ruotti, V.2
Stewart, R.M.3
Thomson, J.A.4
Dewey, C.N.5
-
62
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
63
-
-
84862736361
-
A statistical approach to selecting and confirming validation targets in -omics experiments
-
Leek JT, Taub MA, Rasgon JL (2012) A statistical approach to selecting and confirming validation targets in -omics experiments. BMC Bioinformatics 13: 150.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 150
-
-
Leek, J.T.1
Taub, M.A.2
Rasgon, J.L.3
-
64
-
-
36448967140
-
Dynamic transcriptional changes in response to rehydration in Anabaena sp. PCC 7120
-
DOI 10.1099/mic.0.2007/009233-0
-
Higo A, Suzuki T, Ikeuchi M, Ohmori M (2007) Dynamic transcriptional changes in response to rehydration in Anabaena sp. PCC 7120. Microbiology 153: 3685-3694. (Pubitemid 350168246)
-
(2007)
Microbiology
, vol.153
, Issue.11
, pp. 3685-3694
-
-
Higo, A.1
Suzuki, T.2
Ikeuchi, M.3
Ohmori, M.4
-
65
-
-
0036714331
-
Signal transduction and regulatory mechanisms involved in control of the sS (RpoS) subunit of RNA polymerase
-
Hengge-Aronis R (2002) Signal transduction and regulatory mechanisms involved in control of the sS (RpoS) subunit of RNA polymerase. Microbiol Mol Biol Rev 66: 373-395.
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 373-395
-
-
Hengge-Aronis, R.1
-
66
-
-
29144526787
-
Transcriptional response of Saccharomyces cerevisiae to desiccation and rehydration
-
DOI 10.1128/AEM.71.12.8752-8763.2005
-
Singh J, Kumar D, Ramakrishnan N, Singhal V, Jervis J, at al. (2005) Transcriptional response of Saccharomyces cerevisiae to desiccation and rehydration. Appl Environ Microbiol 71: 8752-8763. (Pubitemid 41804012)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 8752-8763
-
-
Singh, J.1
Kumar, D.2
Ramakrishnan, N.3
Singhal, V.4
Jervis, J.5
Garst, J.F.6
Slaughter, S.M.7
DeSantis, A.M.8
Potts, M.9
Helm, R.F.10
-
67
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 Å resolution
-
Ben-Shem A, Garreau de Loubresse N, Melnikov S, Jenner L, Yusupova G, et al. (2011) The structure of the eukaryotic ribosome at 3.0 Å resolution. Science 334: 1524-1529.
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
Garreau De Loubresse, N.2
Melnikov, S.3
Jenner, L.4
Yusupova, G.5
-
68
-
-
0842267350
-
The ribosomal small-subunit protein S28 gene from Helianthus annuus (Asteraceae) is down-regulated in response to drought, high salinity, and abscisic acid
-
Liu X, Baird VW (2003) The ribosomal small-subunit protein S28 gene from Helianthus annuus (Asteraceae) is down-regulated in response to drought, high salinity, and abscisic acid. Am J Bot 90: 526-531. (Pubitemid 38161869)
-
(2003)
American Journal of Botany
, vol.90
, Issue.4
, pp. 526-531
-
-
Liu, X.1
Baird, W.V.2
-
69
-
-
25644436944
-
Translation initiation: Structures, mechanisms and evolution
-
DOI 10.1017/S0033583505004026, PII S0033583505004026
-
Marintchev A, Wagner G (2004) Translation initiation: structures, mechanisms and evolution. Q Rev Biophys 37: 197-284. (Pubitemid 41379756)
-
(2004)
Quarterly Reviews of Biophysics
, vol.37
, Issue.3-4
, pp. 197-284
-
-
Marintchev, A.1
Wagner, G.2
-
70
-
-
84869012623
-
Abscisic acid refines the synthesis of chloroplast proteins in maize (Zea mays) in response to drought and light
-
Hu X, Wu X, Li C, Lu M, Liu T, et al. (2012) Abscisic acid refines the synthesis of chloroplast proteins in maize (Zea mays) in response to drought and light. PLoS One 7: e49500.
-
(2012)
PLoS One
, vol.7
-
-
Hu, X.1
Wu, X.2
Li, C.3
Lu, M.4
Liu, T.5
-
71
-
-
84863419601
-
A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags
-
Tyson T, Zamora GO, Wong S, Skelton M, Daly B, et al. (2012) A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags. BMC Res Notes 5: 68.
-
(2012)
BMC Res Notes
, vol.5
, pp. 68
-
-
Tyson, T.1
Zamora, G.O.2
Wong, S.3
Skelton, M.4
Daly, B.5
-
72
-
-
84865058190
-
Multiple functionally divergent and conserved copies of alpha tubulin in bdelloid rotifers
-
Eyres I, Frangedakis E, Fontaneto D, Herniou EA, Boschetti C, et al. (2012) Multiple functionally divergent and conserved copies of alpha tubulin in bdelloid rotifers. BMC Evol Biol 12: 148.
-
(2012)
BMC Evol Biol
, vol.12
, pp. 148
-
-
Eyres, I.1
Frangedakis, E.2
Fontaneto, D.3
Herniou, E.A.4
Boschetti, C.5
-
73
-
-
79955020473
-
cDNA representational difference analysis for identifying transcripts regulated under anhydrobiosis in the tardigrade Milnesium tardigradum
-
Grohme MA, Mali B, Schill RO, Frohme M (2011) cDNA representational difference analysis for identifying transcripts regulated under anhydrobiosis in the tardigrade Milnesium tardigradum. J Zool Syst Evol Res 49: 127-132.
-
(2011)
J Zool Syst Evol Res
, vol.49
, pp. 127-132
-
-
Grohme, M.A.1
Mali, B.2
Schill, R.O.3
Frohme, M.4
-
74
-
-
54149091257
-
Metabolism and regulation of canonical histone mRNAs: Life without a poly(A) tail
-
Marzluff W, Wagner EJ, Duronio RJ (2008) Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat Rev Genet 9: 843-854.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 843-854
-
-
Marzluff, W.1
Wagner, E.J.2
Duronio, R.J.3
-
75
-
-
0024395794
-
H2A.X. A histone isoprotein with a conserved C-terminal sequence, is encoded by a novel mRNA with both DNA replication type and polyA 3' processing signals
-
Mannironi C, Bonner WM, Hatch CL (1989) H2A.X. a histone isoprotein with a conserved C-terminal sequence, is encoded by a novel mRNA with both DNA replication type and polyA 3′ processing signals. Nucleic Acids Res 17: 9113-126. (Pubitemid 20003176)
-
(1989)
Nucleic Acids Research
, vol.17
, Issue.22
, pp. 9113-9126
-
-
Mannironi, C.1
Bonner, W.M.2
Hatch, C.L.3
-
76
-
-
38049085313
-
Early evolution of histone mRNA 39 end processing
-
Dávila López M, Samuelsson T (2008) Early evolution of histone mRNA 39 end processing. RNA 14(1): 1-10.16.
-
(2008)
RNA
, vol.14
, Issue.1
-
-
Dávila López, M.1
Samuelsson, T.2
-
77
-
-
79953014914
-
Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
-
Shepard PJ, Choi EA, Lu J, Flanagan LA, Hertel KJ, et al. (2011) Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq. RNA 17: 761-72.
-
(2011)
RNA
, vol.17
, pp. 761-772
-
-
Shepard, P.J.1
Choi, E.A.2
Lu, J.3
Flanagan, L.A.4
Hertel, K.J.5
-
78
-
-
58149381841
-
Regulatory and DNA repair genes contribute to the desiccation resistance of Sinorhizobium meliloti Rm1021
-
Humann JL, Ziemkiewicz HT, Yurgel SN, Kahn ML (2009) Regulatory and DNA repair genes contribute to the desiccation resistance of Sinorhizobium meliloti Rm1021. Plant Microbiology 75(2): 446-453.
-
(2009)
Plant Microbiology
, vol.75
, Issue.2
, pp. 446-453
-
-
Humann, J.L.1
Ziemkiewicz, H.T.2
Yurgel, S.N.3
Kahn, M.L.4
-
79
-
-
0033228126
-
The involvement of ubiquitin in vegetative desiccation tolerance
-
O'Mahony PJ, Oliver MJ (1999) The involvement of ubiquitin in vegetative desiccation tolerance. Plant Molecular Biology 41: 657-667.
-
(1999)
Plant Molecular Biology
, vol.41
, pp. 657-667
-
-
O'Mahony, P.J.1
Oliver, M.J.2
-
80
-
-
71949099048
-
Survival and DNA degradation in anhydrobiotic tardigrades
-
Rebecchi L, Cesari M, Altiero T, Frigieri A, Guidetti R (2009) Survival and DNA degradation in anhydrobiotic tardigrades. J Exp Biol 212: 4033-4039.
-
(2009)
J Exp Biol
, vol.212
, pp. 4033-4039
-
-
Rebecchi, L.1
Cesari, M.2
Altiero, T.3
Frigieri, A.4
Guidetti, R.5
-
81
-
-
0002380156
-
Desiccation tolerance in vegetative plant tissues and seeds: Protein synthesis in relation to desiccation and a potential role for protection and repair mechanisms
-
CB. Osmond, G. Somero, eds, Springer-Verlag, Berlin
-
Bewley JD, Oliver MJ (1992) Desiccation tolerance in vegetative plant tissues and seeds: protein synthesis in relation to desiccation and a potential role for protection and repair mechanisms. In CB. Osmond, G. Somero, eds, Water and Life: A Comparative Analysis of Water Relationships at the Organismic, Cellular and Molecular Levels. Springer-Verlag, Berlin, pp 141-160.
-
(1992)
Water and Life: A Comparative Analysis of Water Relationships at the Organismic, Cellular and Molecular Levels
, pp. 141-160
-
-
Bewley, J.D.1
Oliver, M.J.2
-
82
-
-
0030755398
-
Molecular characterization of a small heat shock/alpha-crystallin protein in encysted Artemia embryos
-
DOI 10.1074/jbc.272.30.19051
-
Liang P, Amons R, Clegg JS, MacRae TH (1997) Molecular characterization of a small heat shock/alpha-crystallin protein in encysted Artemia embryos. J Biol Chem 272: 19051-19058. (Pubitemid 27318262)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.30
, pp. 19051-19058
-
-
Liang, P.1
Amons, R.2
Clegg, J.S.3
MacRae, T.H.4
-
83
-
-
0031020927
-
Purification, structure and in vitro molecular-chaperone activity of Artemia p26, a small heat-shock/alpha-crystallin protein
-
Liang P, Amons R, MacRae TH, Clegg JS (1997) Purification, structure and in vitro molecular-chaperone activity of Artemia p26, a small heat-shock/alpha-crystallin protein. Eur J Biochem 243: 225-232. (Pubitemid 27060406)
-
(1997)
European Journal of Biochemistry
, vol.243
, Issue.1-2
, pp. 225-232
-
-
Liang, P.1
Amons, R.2
Macrae, T.H.3
Clegg, J.S.4
-
84
-
-
0035745767
-
Nuclear p26, a small heat shock/alpha-crystallin protein, and its relationship to stress resistance in Artemia franciscana embryos
-
Willsie JK, Clegg JS (2001) Nuclear p26, a small heat shock/alpha-crystallin protein, and its relationship to stress resistance in Artemia franciscana embryos. Journal Exp Biol 204: 2339-2350. (Pubitemid 34869498)
-
(2001)
Journal of Experimental Biology
, vol.204
, Issue.13
, pp. 2339-2350
-
-
Willsie, J.K.1
Clegg, J.S.2
-
85
-
-
79951671917
-
Expression of heat shock protein-coding genes associated with anhydrobiosis in an African chironomid Polypedilum vanderplanki
-
Gusev O, Cornette R, Kikawada T, Okuda T (2011) Expression of heat shock protein-coding genes associated with anhydrobiosis in an African chironomid Polypedilum vanderplanki. Cell Stress Chaperones 16: 81-90.
-
(2011)
Cell Stress Chaperones
, vol.16
, pp. 81-90
-
-
Gusev, O.1
Cornette, R.2
Kikawada, T.3
Okuda, T.4
-
86
-
-
77955661594
-
Heat shock proteins and resistance to desiccation in congeneric land snails
-
Mizrahi T, Heller J, Goldenberg S, Arad Z (2010) Heat shock proteins and resistance to desiccation in congeneric land snails. Cell Stress Chaperones 15(4): 351-363.
-
(2010)
Cell Stress Chaperones
, vol.15
, Issue.4
, pp. 351-363
-
-
Mizrahi, T.1
Heller, J.2
Goldenberg, S.3
Arad, Z.4
-
87
-
-
18844366526
-
Regulation and function of small heat shock protein genes during amphibian development
-
Heikkila JJ (2004) Regulation and function of small heat shock protein genes during amphibian development. J Cell Biochem 93: 672-680.
-
(2004)
J Cell Biochem
, vol.93
, pp. 672-680
-
-
Heikkila, J.J.1
-
88
-
-
1642298383
-
Desiccation and rehydration elicit distinct heat shock protein transcript responses in flesh fly pupae
-
DOI 10.1242/jeb.00842
-
Rinehart JP, Denlinger DL (2004) Desiccation and rehydration elicit distinct heat shock protein transcript responses in flesh fly pupae. J Exp Biol 207: 963-971. (Pubitemid 38370751)
-
(2004)
Journal of Experimental Biology
, vol.207
, Issue.6
, pp. 963-971
-
-
Hayward, S.A.L.1
Rinehart, J.P.2
Denlinger, D.L.3
-
89
-
-
84862297319
-
Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum
-
Beisser D, Grohme MA, Kopka J, Frohme M, Schill RO, et al. (2012) Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Syst Biol 6: 72.
-
(2012)
BMC Syst Biol
, vol.6
, pp. 72
-
-
Beisser, D.1
Grohme, M.A.2
Kopka, J.3
Frohme, M.4
Schill, R.O.5
-
90
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B, Hillier LW, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185. (Pubitemid 28177229)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
91
-
-
78650560030
-
EvoPipes.net: Bioinformatic tools for ecological and evolutionary genomics
-
Barker MS, Dlugosch KM, Dinh L, Challa RS, Kane NC, et al. (2010) EvoPipes.net: bioinformatic tools for ecological and evolutionary genomics. Evol Bioinform Online 6: 143-149.
-
(2010)
Evol Bioinform Online
, vol.6
, pp. 143-149
-
-
Barker, M.S.1
Dlugosch, K.M.2
Dinh, L.3
Challa, R.S.4
Kane, N.C.5
-
92
-
-
2342483696
-
Simple cDNA normalization using kamchatka crab duplex-specific nuclease
-
Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, et al. (2004) Simple cDNA normalization using kamchatka crab duplex-specific nuclease. Nucleic Acids Res 32: e37.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Zhulidov, P.A.1
Bogdanova, E.A.2
Shcheglov, A.S.3
Vagner, L.L.4
Khaspekov, G.L.5
-
93
-
-
77957151956
-
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
-
Cox MP, Peterson DA, Biggs PJ (2010) SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC bioinformatics11: 485.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 485
-
-
Cox, M.P.1
Peterson, D.A.2
Biggs, P.J.3
-
94
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.Journal 17: 10-12.
-
(2011)
EMBnet.Journal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
95
-
-
84863181401
-
Comparison of the two major classes of assembly algorithms: Overlap-layout-consensus and de-bruijn-graph
-
Li Z, Chen Y, Mu D, Yuan J, Shi Y, et al. (2012) Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph. Brief Funct Genomics 11: 25-37.
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 25-37
-
-
Li, Z.1
Chen, Y.2
Mu, D.3
Yuan, J.4
Shi, Y.5
-
96
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
DOI 10.1038/nature03959, PII N03959
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-80. (Pubitemid 41613494)
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.-J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.I.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.-B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
97
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, et al. (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475: 348-52.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
-
98
-
-
80052226692
-
Sequence-specific error profile of Illumina sequencers
-
Nakamura K, Oshima T, Morimoto T, Ikeda S, Yoshikawa H, et al. (2011) Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res 39: e90.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Nakamura, K.1
Oshima, T.2
Morimoto, T.3
Ikeda, S.4
Yoshikawa, H.5
-
99
-
-
84885140594
-
Improving transcriptome assembly through error correction of high-throughput sequence reads
-
MacManes MD, Eisen MB (2013) Improving transcriptome assembly through error correction of high-throughput sequence reads. PeerJ 1: e113.
-
(2013)
PeerJ
, vol.1
-
-
MacManes, M.D.1
Eisen, M.B.2
-
100
-
-
58149199579
-
FlyBase: Enhancing drosophila gene ontology annotations
-
Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, et al. (2009) FlyBase: enhancing drosophila gene ontology annotations. Nucleic Acids Res 37: D555-D559.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Tweedie, S.1
Ashburner, M.2
Falls, K.3
Leyland, P.4
McQuilton, P.5
-
101
-
-
74049108922
-
BLAST+: Architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, et al. (2009) BLAST+: architecture and applications. BMC Bioinformatics 10: 421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
-
102
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, at al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25(16): 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
|