-
1
-
-
84889026690
-
Rna polymerase ii transcription elongation control
-
Guo, J., and Price, D. H. (2013) RNA polymerase II transcription elongation control. Chem. Rev. 113, 8583-8603
-
(2013)
Chem. Rev.
, vol.113
, pp. 8583-8603
-
-
Guo, J.1
Price, D.H.2
-
2
-
-
84874175008
-
Precise maps of rna polymerase reveal how promoters direct initiation and pausing
-
Kwak, H., Fuda, N. J., Core, L. J., and Lis, J. T. (2013) Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science 339, 950-953
-
(2013)
Science
, vol.339
, pp. 950-953
-
-
Kwak, H.1
Fuda, N.J.2
Core, L.J.3
Lis, J.T.4
-
3
-
-
0029959881
-
Control of rna polymerase ii elongation potential by a novel carboxyl-terminal domain kinase
-
Marshall, N. F., Peng, J., Xie, Z., and Price, D. H. (1996) Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase. J. Biol. Chem. 271, 27176-27183
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 27176-27183
-
-
Marshall, N.F.1
Peng, J.2
Xie, Z.3
Price, D.H.4
-
4
-
-
0029011873
-
Purification of p-tefb, a transcription factor required for the transition into productive elongation
-
Marshall, N. F., and Price, D. H. (1995) Purification of P-TEFb, a transcription factor required for the transition into productive elongation. J. Biol. Chem. 270, 12335-12338
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 12335-12338
-
-
Marshall, N.F.1
Price, D.H.2
-
5
-
-
84876842759
-
Signaling pathways differentially affect rna polymerase ii initiation, pausing, and elongation rate in cells
-
Danko, C. G., Hah, N., Luo, X., Martins, A. L., Core, L., Lis, J. T., Siepel, A., and Kraus, W. L. (2013) Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells. Mol. Cell 50, 212-222
-
(2013)
Mol. Cell
, vol.50
, pp. 212-222
-
-
Danko, C.G.1
Hah, N.2
Luo, X.3
Martins, A.L.4
Core, L.5
Lis, J.T.6
Siepel, A.7
Kraus, W.L.8
-
6
-
-
84875429298
-
Reflections on the history of pre-mrna processing and highlights of current knowledge: A unified picture
-
Darnell, J. E., Jr. (2013) Reflections on the history of pre-mRNA processing and highlights of current knowledge: a unified picture. RNA 19, 443-460
-
(2013)
RNA
, vol.19
, pp. 443-460
-
-
Darnell Jr., J.E.1
-
7
-
-
14444275279
-
Dsif, a novel transcription elongation factor that regulates rna polymerase ii processivity, is composed of human spt4 and spt5 homologs
-
Wada, T., Takagi, T., Yamaguchi, Y., Ferdous, A., Imai, T., Hirose, S., Sugimoto, S., Yano, K., Hartzog, G. A., Winston, F., Buratowski, S., and Handa, H. (1998) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev. 12, 343-356
-
(1998)
Genes Dev.
, vol.12
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
Hirose, S.6
Sugimoto, S.7
Yano, K.8
Hartzog, G.A.9
Winston, F.10
Buratowski, S.11
Handa, H.12
-
8
-
-
0033515521
-
Nelf, a multisubunit complex containing rd, cooperates with dsif to repress rna polymerase ii elongation
-
Yamaguchi, Y., Takagi, T., Wada, T., Yano, K., Furuya, A., Sugimoto, S., Hasegawa, J., and Handa, H. (1999) NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97, 41-51
-
(1999)
Cell
, vol.97
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
Hasegawa, J.7
Handa, H.8
-
9
-
-
0035834647
-
A highly purified rna polymerase ii elongation control system
-
Renner, D. B., Yamaguchi, Y., Wada, T., Handa, H., and Price, D. H. (2001) A highly purified RNA polymerase II elongation control system. J. Biol. Chem. 276, 42601-42609
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 42601-42609
-
-
Renner, D.B.1
Yamaguchi, Y.2
Wada, T.3
Handa, H.4
Price, D.H.5
-
10
-
-
77954889072
-
Interactions between dsif (drb sensitivity inducing factor), nelf (negative elongation factor), and the drosophila rna polymerase ii transcription elongation complex
-
Missra, A., and Gilmour, D. S. (2010) Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex. Proc. Natl. Acad. Sci. U.S.A. 107, 11301-11306
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 11301-11306
-
-
Missra, A.1
Gilmour, D.S.2
-
11
-
-
0346095303
-
Dynamics of human immunodeficiency virus transcription: P-tefb phosphorylates rd and dissociates negative effectors from the transactivation response element
-
Fujinaga, K., Irwin, D., Huang, Y., Taube, R., Kurosu, T., and Peterlin, B. M. (2004) Dynamics of human immunodeficiency virus transcription: P-TEFb phosphorylates RD and dissociates negative effectors from the transactivation response element. Mol. Cell. Biol. 24, 787-795
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 787-795
-
-
Fujinaga, K.1
Irwin, D.2
Huang, Y.3
Taube, R.4
Kurosu, T.5
Peterlin, B.M.6
-
12
-
-
77951920690
-
C-myc regulates transcriptional pause release
-
Rahl, P. B., Lin, C. Y., Seila, A. C., Flynn, R. A., McCuine, S., Burge, C. B., Sharp, P. A., and Young, R. A. (2010) c-Myc regulates transcriptional pause release. Cell 141, 432-445
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
McCuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
13
-
-
30744449491
-
P-tefb-mediated phosphorylation of hspt5 c-terminal repeats is critical for processive transcription elongation
-
Yamada, T., Yamaguchi, Y., Inukai, N., Okamoto, S., Mura, T., and Handa, H. (2006) P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation. Mol. Cell 21, 227-237
-
(2006)
Mol. Cell
, vol.21
, pp. 227-237
-
-
Yamada, T.1
Yamaguchi, Y.2
Inukai, N.3
Okamoto, S.4
Mura, T.5
Handa, H.6
-
14
-
-
0032534814
-
Evidence that p-tefb alleviates the negative effect of dsif on rna polymerase ii-dependent transcription in vitro
-
Wada, T., Takagi, T., Yamaguchi, Y., Watanabe, D., and Handa, H. (1998) Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro. EMBO J. 17, 7395-7403
-
(1998)
EMBO J.
, vol.17
, pp. 7395-7403
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Watanabe, D.4
Handa, H.5
-
15
-
-
33745446261
-
A mediatorresponsive form of metazoan rna polymerase ii
-
Hu, X., Malik, S., Negroiu, C. C., Hubbard, K., Velalar, C. N., Hampton, B., Grosu, D., Catalano, J., Roeder, R. G., and Gnatt, A. (2006) A Mediatorresponsive form of metazoan RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A. 103, 9506-9511
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 9506-9511
-
-
Hu, X.1
Malik, S.2
Negroiu, C.C.3
Hubbard, K.4
Velalar, C.N.5
Hampton, B.6
Grosu, D.7
Catalano, J.8
Roeder, R.G.9
Gnatt, A.10
-
16
-
-
84862909057
-
Functional association of gdown1 with rna polymerase ii poised on human genes
-
Cheng, B., Li, T., Rahl, P. B., Adamson, T. E., Loudas, N. B., Guo, J., Varzavand, K., Cooper, J. J., Hu, X., Gnatt, A., Young, R. A., and Price, D. H. (2012) Functional association of Gdown1 with RNA polymerase II poised on human genes. Mol. Cell 45, 38-50
-
(2012)
Mol. Cell
, vol.45
, pp. 38-50
-
-
Cheng, B.1
Li, T.2
Rahl, P.B.3
Adamson, T.E.4
Loudas, N.B.5
Guo, J.6
Varzavand, K.7
Cooper, J.J.8
Hu, X.9
Gnatt, A.10
Young, R.A.11
Price, D.H.12
-
17
-
-
84862908533
-
Transcriptional regulation by pol ii(g) involving mediator and competitive interactions of gdown1 and tfiif with pol ii
-
Jishage, M., Malik, S., Wagner, U., Uberheide, B., Ishihama, Y., Hu, X., Chait, B. T., Gnatt, A., Ren, B., and Roeder, R. G. (2012) Transcriptional regulation by Pol II(G) involving Mediator and competitive interactions of Gdown1 and TFIIF with Pol II. Mol. Cell 45, 51-63
-
(2012)
Mol. Cell
, vol.45
, pp. 51-63
-
-
Jishage, M.1
Malik, S.2
Wagner, U.3
Uberheide, B.4
Ishihama, Y.5
Hu, X.6
Chait, B.T.7
Gnatt, A.8
Ren, B.9
Roeder, R.G.10
-
18
-
-
84866118613
-
Regulation of mammalian transcription by gdown1 through a novel steric cross-talk revealed by cryo-em
-
Wu, Y. M., Chang, J. W., Wang, C. H., Lin, Y. C., Wu, P. L., Huang, S. H., Chang, C. C., Hu, X., Gnatt, A., and Chang, W. H. (2012) Regulation of mammalian transcription by Gdown1 through a novel steric cross-talk revealed by cryo-EM. EMBO J. 31, 3575-3587
-
(2012)
EMBO J.
, vol.31
, pp. 3575-3587
-
-
Wu, Y.M.1
Chang, J.W.2
Wang, C.H.3
Lin, Y.C.4
Wu, P.L.5
Huang, S.H.6
Chang, C.C.7
Hu, X.8
Gnatt, A.9
Chang, W.H.10
-
19
-
-
2342535795
-
Involvement of transcription termination factor 2 in mitotic repression of transcription elongation
-
Jiang, Y., Liu, M., Spencer, C. A., and Price, D. H. (2004) Involvement of transcription termination factor 2 in mitotic repression of transcription elongation. Mol. Cell 14, 375-385
-
(2004)
Mol. Cell
, vol.14
, pp. 375-385
-
-
Jiang, Y.1
Liu, M.2
Spencer, C.A.3
Price, D.H.4
-
20
-
-
67849092279
-
Isolation and functional analysis ofrna polymerase ii elongation complexes
-
Cheng, B., and Price, D. H. (2009) Isolation and functional analysis ofRNA polymerase II elongation complexes. Methods 48, 346-352
-
(2009)
Methods
, vol.48
, pp. 346-352
-
-
Cheng, B.1
Price, D.H.2
-
21
-
-
34547563511
-
Properties of rna polymerase ii elongation complexes before and after the p-tefb-mediated transition into productive elongation
-
Cheng, B., and Price, D. H. (2007) Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation. J. Biol. Chem. 282, 21901-21912
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 21901-21912
-
-
Cheng, B.1
Price, D.H.2
-
22
-
-
0346275196
-
Analysis of rna polymerase ii elongation in vitro
-
Adamson, T. E., Shore, S. M., and Price, D. H. (2003) Analysis of RNA polymerase II elongation in vitro. Methods Enzymol. 371, 264-275
-
(2003)
Methods Enzymol.
, vol.371
, pp. 264-275
-
-
Adamson, T.E.1
Shore, S.M.2
Price, D.H.3
-
23
-
-
0032450547
-
Rna polymerase ii elongation control
-
Peng, J., Liu, M., Marion, J., Zhu, Y., and Price, D. H. (1998) RNA polymerase II elongation control. Cold Spring Harb. Symp. Quant. Biol. 63, 365-370
-
(1998)
Cold Spring Harb. Symp. Quant. Biol.
, vol.63
, pp. 365-370
-
-
Peng, J.1
Liu, M.2
Marion, J.3
Zhu, Y.4
Price, D.H.5
-
24
-
-
56649106687
-
Analysis of factor interactions withrna polymerase ii elongation complexes using a new electrophoretic mobility shift assay
-
Cheng, B., and Price, D. H. (2008) Analysis of factor interactions withRNA polymerase II elongation complexes using a new electrophoretic mobility shift assay. Nucleic Acids Res. 36, e135
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Cheng, B.1
Price, D.H.2
-
25
-
-
35448978215
-
Quantitative comparison of imac and tio2 surfaces used in the study of regulated, dynamic protein phosphorylation
-
Liang, X., Fonnum, G., Hajivandi, M., Stene, T., Kjus, N. H., Ragnhildstveit, E., Amshey, J. W., Predki, P., and Pope, R. M. (2007) Quantitative comparison of IMAC and TiO2 surfaces used in the study of regulated, dynamic protein phosphorylation. J. Am. Soc. Mass Spectrom. 18, 1932-1944
-
(2007)
J. Am. Soc. Mass Spectrom.
, vol.18
, pp. 1932-1944
-
-
Liang, X.1
Fonnum, G.2
Hajivandi, M.3
Stene, T.4
Kjus, N.H.5
Ragnhildstveit, E.6
Amshey, J.W.7
Predki, P.8
Pope, R.M.9
-
26
-
-
0024504832
-
Dynamic interaction between a drosophila transcription factor and rna polymerase ii
-
Price, D. H., Sluder, A. E., and Greenleaf, A. L. (1989) Dynamic interaction between a Drosophila transcription factor and RNA polymerase II. Mol. Cell. Biol. 9, 1465-1475
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 1465-1475
-
-
Price, D.H.1
Sluder, A.E.2
Greenleaf, A.L.3
-
27
-
-
49449085504
-
A quantitative atlas of mitotic phosphorylation
-
Dephoure, N., Zhou, C., Villén, J., Beausoleil, S. A., Bakalarski, C. E., Elledge, S. J., and Gygi, S. P. (2008) A quantitative atlas of mitotic phosphorylation. Proc. Natl. Acad. Sci. U.S.A. 105, 10762-10767
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 10762-10767
-
-
Dephoure, N.1
Zhou, C.2
Villén, J.3
Beausoleil, S.A.4
Bakalarski, C.E.5
Elledge, S.J.6
Gygi, S.P.7
-
28
-
-
0026006495
-
Progression of the cell cycle through mitosis leads to abortion of nascent transcripts
-
Shermoen, A. W., and O'Farrell, P. H. (1991) Progression of the cell cycle through mitosis leads to abortion of nascent transcripts. Cell 67, 303-310
-
(1991)
Cell
, vol.67
, pp. 303-310
-
-
Shermoen, A.W.1
O'Farrell, P.H.2
-
29
-
-
35448956881
-
Finishing mitosis, one step at a time
-
Sullivan, M., and Morgan, D. O. (2007) Finishing mitosis, one step at a time. Nat. Rev. Mol. Cell Biol. 8, 894-903
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 894-903
-
-
Sullivan, M.1
Morgan, D.O.2
-
30
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey, M. H., Newman, J. J., Bilodeau, S., Zhan, Y., Orlando, D. A., van Berkum, N. L., Ebmeier, C. C., Goossens, J., Rahl, P. B., Levine, S. S., Taatjes, D. J., Dekker, J., and Young, R. A. (2010) Mediator and cohesin connect gene expression and chromatin architecture. Nature 467, 430-435
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
Van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
Taatjes, D.J.11
Dekker, J.12
Young, R.A.13
-
31
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte, W. A., Orlando, D. A., Hnisz, D., Abraham, B. J., Lin, C. Y., Kagey, M. H., Rahl, P. B., Lee, T. I., and Young, R. A. (2013) Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153, 307-319
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
32
-
-
84885607335
-
Genomic organization of human transcription initiation complexes
-
Venters, B. J., and Pugh, B. F. (2013) Genomic organization of human transcription initiation complexes. Nature 502, 53-58
-
(2013)
Nature
, vol.502
, pp. 53-58
-
-
Venters, B.J.1
Pugh, B.F.2
-
33
-
-
84858165145
-
Genome-wide structure and organization of eukaryotic pre-initiation complexes
-
Rhee, H. S., and Pugh, B. F. (2012) Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483, 295-301
-
(2012)
Nature
, vol.483
, pp. 295-301
-
-
Rhee, H.S.1
Pugh, B.F.2
-
34
-
-
84864093366
-
Rethinking the role of tfiif in transcript initiation by rna polymerase ii
-
Luse, D. S. (2012) Rethinking the role of TFIIF in transcript initiation by RNA polymerase II. Transcription 3, 156-159
-
(2012)
Transcription
, vol.3
, pp. 156-159
-
-
Luse, D.S.1
-
35
-
-
80053148610
-
Transcription factor tfiif is not required for initiation byrnapolymerase ii, but it is essential to stabilize transcription factor tfiib in early elongation complexes
-
Cabart, P., Újvári, A., Pal, M., and Luse, D. S. (2011) Transcription factor TFIIF is not required for initiation byRNApolymerase II, but it is essential to stabilize transcription factor TFIIB in early elongation complexes. Proc. Natl. Acad. Sci. U.S.A. 108, 15786-15791
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 15786-15791
-
-
Cabart, P.1
Újvári, A.2
Pal, M.3
Luse, D.S.4
-
36
-
-
79953713243
-
Molecular architecture of the human mediator-rna polymerase ii-tfiif assembly
-
Bernecky, C., Grob, P., Ebmeier, C. C., Nogales, E., and Taatjes, D. J. (2011) Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biol. 9, e1000603
-
(2011)
PLoS Biol.
, vol.9
-
-
Bernecky, C.1
Grob, P.2
Ebmeier, C.C.3
Nogales, E.4
Taatjes, D.J.5
-
37
-
-
80455164640
-
Origins and activity of the mediator complex
-
Conaway, R. C., and Conaway, J. W. (2011) Origins and activity of the Mediator complex. Semin. Cell Dev. Biol. 22, 729-734
-
(2011)
Semin. Cell Dev. Biol.
, vol.22
, pp. 729-734
-
-
Conaway, R.C.1
Conaway, J.W.2
-
38
-
-
84888588009
-
The mediator complex and transcription regulation
-
Poss, Z. C., Ebmeier, C. C., and Taatjes, D. J. (2013) The Mediator complex and transcription regulation. Crit. Rev. Biochem. Mol. Biol. 48, 575-608
-
(2013)
Crit. Rev. Biochem. Mol. Biol.
, vol.48
, pp. 575-608
-
-
Poss, Z.C.1
Ebmeier, C.C.2
Taatjes, D.J.3
-
39
-
-
77954922964
-
Activator-mediator binding regulates mediator-cofactor interactions
-
Ebmeier, C. C., and Taatjes, D. J. (2010) Activator-Mediator binding regulates Mediator-cofactor interactions. Proc. Natl. Acad. Sci. U.S.A. 107, 11283-11288
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 11283-11288
-
-
Ebmeier, C.C.1
Taatjes, D.J.2
-
40
-
-
84860706859
-
Mrna decapping factors and the exonuclease xrn2 function in widespread premature termination of rna polymerase ii transcription
-
Brannan, K., Kim, H., Erickson, B., Glover-Cutter, K., Kim, S., Fong, N., Kiemele, L., Hansen, K., Davis, R., Lykke-Andersen, J., and Bentley, D. L. (2012) mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription. Mol. Cell 46, 311-324
-
(2012)
Mol. Cell
, vol.46
, pp. 311-324
-
-
Brannan, K.1
Kim, H.2
Erickson, B.3
Glover-Cutter, K.4
Kim, S.5
Fong, N.6
Kiemele, L.7
Hansen, K.8
Davis, R.9
Lykke-Andersen, J.10
Bentley, D.L.11
|