Gut microbiomes of Indian children of varying nutritional status

PLoS ONE

Volumn 9, Issue 4, 2014, Pages

  Ghosh, Tarini Shankar ^a   Gupta, Sourav Sen ^b   Bhattacharya, Tanudeep ^a   Yadav, Deepak ^a   Barik, Anamitra ^c   Chowdhury, Abhijit ^c,d   Das, Bhabatosh ^b   Mande, Sharmila S ^a   Nair, G Balakrish ^b  

^a TATA CONSULTANCY SERVICES   (India)

^b Translational Health Science and Technology Institute   (India)

^c Society for Health and Demographic Surveillance   (India)

^d INSTITUTE OF POST GRADUATE MEDICAL EDUCATION AND RESEARCH   (India)

Author keywords

[No Author keywords available]

Indexed keywords

VIRULENCE FACTOR;

ANTHROPOMETRY; ARTICLE; BIOLOGICAL FUNCTIONS; CHILD; CHILD NUTRITION; CLINICAL ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; DISEASE SEVERITY; ENZYME ANALYSIS; ESCHERICHIA; HUMAN; INDIAN; INTESTINE FLORA; MALNUTRITION; METAGENOMICS; NONHUMAN; NUTRITIONAL STATUS; PROTEIN FAMILY; SHIGELLA; STREPTOCOCCUS; TAXONOMY; BACTERIA; BACTERIAL GENE; DNA SEQUENCE; GASTROINTESTINAL TRACT; GENETICS; INDIA; MICROBIOLOGY; MICROFLORA; MOLECULAR TYPING; NUTRITIONAL DISORDER;

BACTERIA; CHILD; CHILD NUTRITION DISORDERS; GASTROINTESTINAL TRACT; GENES, BACTERIAL; HUMANS; INDIA; MICROBIOTA; MOLECULAR TYPING; NUTRITIONAL STATUS; SEQUENCE ANALYSIS, DNA; VIRULENCE FACTORS;

EID: 84899752631     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0095547     Document Type: Article

References (33)

1. Guarner F, Malagelada JR (2003) Gut flora in health and disease. Lancet 361: 512-519. (Pubitemid 36173720)
2. Black RE, Victora CG, Walker SP, Bhutta ZA, Christian P, et al. (2013) Maternal and child undernutrition and overweight in low-income and middle-income countries. Lancet 382: 427-451.
3. UN (2012) Estimation Levels & Trends in Child Mortality. UN Inter-agency Group for Child Mortality.
4. Gragnolati M SM, Das Gupta M, Bredenkamp C, Lee YK (2005) India's undernourished children: A call for reform and action.
5. Report of Association of Voluntary Agencies for Rural Development ND, India (2012) Hunger and malnutrition in India: Status, Causes and Cures.
6. Dewey KG, Mayers DR (2011) Early child growth: how do nutrition and infection interact? Matern Child Nutr 7 Suppl 3: 129-142.
7. Gordon JI, Dewey KG, Mills DA, Medzhitov RM (2012) The human gut microbiota and undernutrition. Sci Transl Med 4: 137ps112.
8. Gupta SS, Mohammed MH, Ghosh TS, Kanungo S, Nair GB, et al. (2011) Metagenome of the gut of a malnourished child. Gut Pathog 3: 7.
9. Monira S, Nakamura S, Gotoh K, Izutsu K, Watanabe H, et al. (2011) Gut microbiota of healthy and malnourished children in bangladesh. Front Microbiol 2: 228.
10. Smith MI, Yatsunenko T, Manary MJ, Trehan I, Mkakosya R, et al. (2013) Gut microbiomes of Malawian twin pairs discordant for kwashiorkor. Science 339: 548-554.
11. De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, et al. (2010) Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A 107: 14691-14696.
12. Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, et al. (2012) Human gut microbiome viewed across age and geography. Nature 486: 222-227.
13. Picot J, Hartwell D, Harris P, Mendes D, Clegg AJ, et al. (2012) The effectiveness of interventions to treat severe acute malnutrition in young children: a systematic review. Health Technol Assess 16: 1-316.
14. Shoham J, Duffield A (2009) Proceedings of the World Health Organization/UNICEF/World Food Programme/United Nations High Commissioner for Refugees Consultation on the management of moderate malnutrition in children under 5 years of age. Food Nutr Bull 30: S464-474.
15. WHO (2009) WHO Child Growth Standards. Growth Velocity Based on Weight, Length and Head Circumference. Methods and Development. WHO, Geneva, WHO Press.
16. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
17. Ghosh TS, Monzoorul Haque M, Mande SS (2010) DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. BMC Bioinformatics 11 Suppl 7: S14.
18. Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, et al. (2011) Enterotypes of the human gut microbiome. Nature 473: 174-180.
19. Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, et al. (2012) Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol 8: e1002606.
20. Cohen J (1988) Statistical Power Analysis for the Behavioral Sciences: L. Erlbaum Associates.
21. Powell S, Szklarczyk D, Trachana K, Roth A, Kuhn M, et al. (2012) eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Res 40: D284-289.
22. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, et al. (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: D233-238.
23. Chen L, Yang J, Yu J, Yao Z, Sun L, et al. (2005) VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res 33: D325-328. (Pubitemid 40207888)
24. Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27: 431-432.
25. Brown KH (2003) Diarrhea and malnutrition. J Nutr 133: 328S-332S.
26. Gevers D, Knight R, Petrosino JF, Huang K, McGuire AL, et al. (2012) The Human Microbiome Project: a community resource for the healthy human microbiome. PLoS Biol 10: e1001377.
27. Benus RF, van der Werf TS, Welling GW, Judd PA, Taylor MA, et al. (2010) Association between Faecalibacterium prausnitzii and dietary fibre in colonic fermentation in healthy human subjects. Br J Nutr 104: 693-700.
28. Van den Abbeele P, Gerard P, Rabot S, Bruneau A, El Aidy S, et al. (2011) Arabinoxylans and inulin differentially modulate the mucosal and luminal gut microbiota and mucin-degradation in humanized rats. Environ Microbiol 13: 2667-2680.
29. Andoh A, Tsujikawa T, Fujiyama Y (2003) Role of dietary fiber and short-chain fatty acids in the colon. Curr Pharm Des 9: 347-358. (Pubitemid 36131728)
30. Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457: 480-484.
31. Hakansson A, Molin G (2011) Gut microbiota and inflammation. Nutrients 3: 637-682.
32. Bajaj JS, Hylemon PB, Ridlon JM, Heuman DM, Daita K, et al. (2012) Colonic mucosal microbiome differs from stool microbiome in cirrhosis and hepatic encephalopathy and is linked to cognition and inflammation. Am J Physiol Gastrointest Liver Physiol 303: G675-685.
33. Peuhkuri K, Vapaatalo H, Korpela R (2010) Even low-grade inflammation impacts on small intestinal function. World J Gastroenterol 16: 1057-1062.