Erratum: Analysis of prostate-specific antigen transcripts in chimpanzees, cynomolgus monkeys, baboons, and African green monkeys (PLoS ONE (2014) 9, 4 (e94522) DOI: 10.1371/journal.pone.0094522);Analysis of prostate-specific antigen transcripts in chimpanzees, cynomolgus monkeys, baboons, and African green monkeys

PLoS ONE

Volumn 9, Issue 4, 2014, Pages

  Mubiru, James N ^a   Yang, Alice S ^b   Olsen, Christian ^c   Nayak, Sudhir ^d   Livi, Carolina B ^e   Dick Jr , Edward J ^a   Owston, Michael ^a   Garcia Forey, Magdalena ^a   Shade, Robert E ^a   Rogers, Jeffrey ^f  

^a SOUTHWEST NATIONAL PRIMATE RESEARCH CENTER   (United States)

^b ST MARY'S UNIVERSITY   (United States)

^c Biomatters Inc   (United States)

^d The College of New Jersey   (United States)

^e University of Texas Health Science Center   (United States)

^f BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROSTATE SPECIFIC ANTIGEN; CODON; MESSENGER RNA;

ARTICLE; BABOON; CHIMPANZEE; CHLOROCEBUS AETHIOPS; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC HETEROGENEITY; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; MACACA FASCICULARIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PSA GENE; REAL TIME POLYMERASE CHAIN REACTION; ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; ANIMAL; BAYES THEOREM; CHEMISTRY; CODON; GENETICS; INTRON; MALE; METABOLISM; MOLECULAR GENETICS; PAN TROGLODYTES; PHYLOGENY; STATISTICAL MODEL;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BAYES THEOREM; CERCOPITHECUS AETHIOPS; CLONING, MOLECULAR; CODON; INTRONS; LIKELIHOOD FUNCTIONS; MACACA FASCICULARIS; MALE; MOLECULAR SEQUENCE DATA; PAN TROGLODYTES; PAPIO; PHYLOGENY; PROSTATE-SPECIFIC ANTIGEN; REAL-TIME POLYMERASE CHAIN REACTION; RNA, MESSENGER;

EID: 84899650646     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0106018     Document Type: Erratum

References (41)

1. Yousef GM, Chang A, Scorilas A, Diamandis EP (2000) Genomic organization of the human kallikrein gene family on chromosome 19q13.3-q13.4. Biochem Biophys Res Commun 276: 125-133.
2. Diamandis EP, Yousef GM, Luo I, Magklara I, Obiezu CV (2000) The new human kallikrein gene family: Implications in carcinogenesis. Tr Endocrinol Metab 11: 54-60. (Pubitemid 30106476)
3. Lundwall A, Lilja H (1987) Molecular cloning of human prostate specific antigen cDNA. FEBS Lett 214: 317-322. (Pubitemid 17085741)
4. Riegman PH, Vlietstra RJ, van der Korput JA, Romijn JC, Trapman J (1989) Characterization of the prostate-specific antigen gene: A novel human kallikreinlike gene. Biochem Biophys Res Commun 159: 95-102. (Pubitemid 19087618)
5. Carter P, Wells JA (1988) Dissecting the catalytic triad of a serine protease. Nature 332: 564-568.
6. Riegman PH, Klaassen P, van der Korput JA, Romijn JC, Trapman J (1988) Molecular cloning and characterization of novel prostate antigen cDNAs. Biochem Biophys Res Commun 155: 181-188.
7. Balk SP, Ko YJ, Bubley GJ (2003) Biology of prostate-specific antigen. J Clin Oncol 21: 383-391. (Pubitemid 46606169)
8. Lövgren J, Airas K, Lilja H (1999) Enzymatic action of human glandular kallikrein 2 (hK2): Substrate specificity and regulation by Zn2+ and extracellular protease inhibitors. Eur J Biochem 262: 781-789. (Pubitemid 29291036)
9. Sensabaugh GF (1978) Isolation and characterization of a semen-specific protein from human seminal plasma: A potential new marker for semen identification. J Forensic Sci 23: 106-115. (Pubitemid 8275289)
10. Lundwall A, Bjartell A, Olsson AY, Malm J (2002) Semenogelin I and II, the predominant human seminal plasma proteins, are also expressed in non-genital tissues. Mol Hum Reprod 8: 805-810. (Pubitemid 35012467)
11. Lilja H, Oldbring J, Rannevik G, Laurell CB (1987) Seminal vesicle-secreted proteins and their reactions during gelation and liquefaction of human semen. J Clin Invest 80: 281-285.
12. Dorus S, Evans PD, Wyckoff GJ, Choi SS, Lahn BT (2004) Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity. Nat Genet 36: 1326-1329. (Pubitemid 39577943)
13. Tauber PF, Propping D, Schumacher GFB, Zaneveld LJD (1980) Biochemical aspects of the coagulation and liquefaction of human semen. J Androl 1: 280-288.
14. Lilja H (1985) A kallikrein-like serine protease in prostatic fluid cleaves the predominant seminal vesicle protein. J Clin Invest 76: 1899-1903. (Pubitemid 16196061)
15. Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476. (Pubitemid 352759009)
16. Keren H, Lev-Maor G, Ast G (2010) Alternative splicing and evolution: Diversification, exon definition, and function. Nat Rev Genet. 11: 345-355.
17. Heuzé-Vourc9h N, Leblond V, Courty Y (2003) Complex alternative splicing of the hKLK3 gene coding for the tumor marker PSA (prostate-specific- antigen). Eur J Biochem 270: 706-714. (Pubitemid 36286583)
18. Haerty W, Jagadeeshan S, Kulathinal RJ, Wong A, Ravi Ram K, et al. (2007) Evolution in the fast lane: Rapidly evolving sex-related genes in Drosophila. Genetics 177: 1321-1335. (Pubitemid 350277035)
19. Pujolar JM, Pogson GH (2011) Positive Darwinian selection in gamete recognition proteins of Strongylocentrotus sea urchins. Mol Ecol 20: 4968-4982.
20. Marques PI, Bernardino R, Fernandes T, NISC Comparative Sequencing Program, Green ED, et al. (2012) Birth and death of KLK3 and KLK2 in primates: Evolution driven by reproductive biology. Genome Biol Evol 4: 1331-1338.
21. Clark NL, Swanson WJ (2005) Pervasive adaptive evolution in primate seminal proteins. PLoS Genet 1:e35.
22. Mubiru JN, Hubbard GB, Dick EJ Jr, Furman J, Troyer DA, et al. (2008) Nonhuman primates as models for studies of prostate specific antigen and prostatic diseases. Prostate 68: 1546-1554.
23. Mubiru JN, Shen-Ong GL, Valente AJ, Troyer DA (2004) Alternative spliced variants of the alpha-methylacyl-CoA racemase gene and their expression in prostate cancer. Gene 327: 89-98. (Pubitemid 38186651)
24. Marshall DJ, Rudnick KA, Lu J, Snyder LA (2006) Cloning and sequencing of the cynomolgus monkey prostate specific antigen cDNA. JMed Primatol 35: 12-17.
25. Heuzé-Vourc9h N, Leblond V, Olayat S, Gauthier F, Courty Y (2001) Characterization of PSA-RP2, a protein related to prostate-specific antigen and encoded by alternative hKLK3 transcripts. Eur J Biochem 268: 4408-4413. (Pubitemid 32862849)
26. Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. (Pubitemid 38832724)
27. Steinway SN, Dannenfelser R, Laucius CD, Hayes JE, Nayak S (2010) JCoDA: A tool for detecting evolutionary selection. BMC Bioinformatics 11: 284.
28. Yang Z (2007) PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 8: 1586-1591. (Pubitemid 47236688)
29. Goldman N, Yang Z (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 11: 725-736.
30. Yang Z, Bielawski JP (2000) Statistical methods for detecting molecular adaptation. Tr Ecol Evol 15: 496-503.
31. Yang Z, Wong WS, Nielsen R (2005) Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol 22: 1107-1118. (Pubitemid 40471423)
32. Felsenstein J (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17: 368-376. (Pubitemid 11016207)
33. Debela M, Magdolen V, Schechter N, Valachova M, Lottspeich F, et al. (2006) Specificity profiling of seven human tissue kallikreins reveals individual subsite preferences. J Biol Chem 281: 25,678-25,688. (Pubitemid 44401957)
34. Kurlender L, Borgono C, Michael IP, Obiezu C, Elliott MB, et al. (2005) A survey of alternative transcripts of human tissue kallikrein genes. Biochim Biophys Acta 25: 1-14. (Pubitemid 40720237)
35. Whitbread AK, Veveris-Lowe TL, Dong Y, Tan OL, Gardiner R, et al. (2010) Expression of PSA-RP2, an alternatively spliced variant from the PSA gene, is increased in prostate cancer tissues but the protein is not secreted from prostate cancer cells. Biol Chem 391: 461-466.
36. Steiner MS, Couch RC, Raghow S, Stauffer D (1999) The chimpanzee as a model of human benign prostatic hyperplasia. J Urol 162: 1454-1461. (Pubitemid 29428618)
37. Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, et al. (2012). Insights into hominid evolution from the gorilla genome sequence. Nature 483: 169-175.
38. Dixson AF (2012) Primate sexuality: Comparative studies of the prosimians, monkeys, apes, and humans. New York: Oxford University Press.
39. Goodall J. (1986) The chimpanzees of Gombe: Patterns of behavior. Cambridge, MA: Belknap Press, Harvard University Press.
40. Dixson AF, Anderson MJ (2002) Sexual selection, seminal coagulation, and copulatory plug formation in primates. Folia Primatol (Basel) 73: 63-69. (Pubitemid 35002758)
41. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 11: 4673-4680. (Pubitemid 24354800)