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Volumn 3, Issue , 2012, Pages

Evolution of the human-specific microRNA miR-941

Author keywords

[No Author keywords available]

Indexed keywords

INSULIN; MICRORNA; MICRORNA 941; NEUROTRANSMITTER; SONIC HEDGEHOG PROTEIN; UNCLASSIFIED DRUG;

EID: 84869485949     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms2146     Document Type: Article
Times cited : (103)

References (58)
  • 1
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King, M. C. & Wilson, A. C. Evolution at two levels in humans and chimpanzees. Science 188, 107-116 (1975).
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.C.1    Wilson, A.C.2
  • 2
  • 3
    • 33644855479 scopus 로고    scopus 로고
    • Expression profiling in primates reveals a rapid evolution of human transcription factors
    • DOI 10.1038/nature04559, PII N04559
    • Gilad, Y., Oshlack, A., Smyth, G. K., Speed, T. P. & White, K. P. Expression profling in primates reveals a rapid evolution of human transcription factors. Nature 440, 242-245 (2006). (Pubitemid 43372105)
    • (2006) Nature , vol.440 , Issue.7081 , pp. 242-245
    • Gilad, Y.1    Oshlack, A.2    Smyth, G.K.3    Speed, T.P.4    White, K.P.5
  • 4
    • 76049088399 scopus 로고    scopus 로고
    • Diferences in human and chimpanzee gene expression patterns defne an evolving network of transcription factors in brain
    • Nowick, K., Gernat, T., Almaas, E. & Stubbs, L. Diferences in human and chimpanzee gene expression patterns defne an evolving network of transcription factors in brain. Proc. Natl Acad. Sci. USA 106, 22358-22363 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 22358-22363
    • Nowick, K.1    Gernat, T.2    Almaas, E.3    Stubbs, L.4
  • 5
    • 84855175650 scopus 로고    scopus 로고
    • MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates
    • Somel, M. et al. MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates. PLoS Biol. 9, e1001214 (2011).
    • (2011) PLoS Biol. , vol.9
    • Somel, M.1
  • 6
    • 80055092199 scopus 로고    scopus 로고
    • MicroRNA expression and regulation in human, chimpanzee, and macaque brains
    • Hu, H. Y. et al. MicroRNA expression and regulation in human, chimpanzee, and macaque brains. PLoS Genet. 7, e1002327 (2011).
    • (2011) PLoS Genet. , vol.7
    • Hu, H.Y.1
  • 7
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D. P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116, 281-297 (2004).
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 8
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: Small RNAs with a big role in gene regulation
    • DOI 10.1038/nrg1379
    • He, L. & Hannon, G. J. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev. Genet 5, 522-531 (2004). (Pubitemid 38868508)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.7 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 9
    • 70350705948 scopus 로고    scopus 로고
    • Repertoire and evolution of miRNA genes in four divergent nematode species
    • De Wit, E., Linsen, S. E., Cuppen, E. & Berezikov, E. Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res. 19, 2064-2074 (2009).
    • (2009) Genome Res. , vol.19 , pp. 2064-2074
    • De Wit, E.1    Linsen, S.E.2    Cuppen, E.3    Berezikov, E.4
  • 13
    • 75549089967 scopus 로고    scopus 로고
    • T e UCSC Genome Browser database: Update 2010
    • Rhead, B. et al. T e UCSC Genome Browser database: update 2010. Nucleic Acids Res. 38, D613-619 (2010).
    • (2010) Nucleic Acids Res. , vol.38
    • Rhead, B.1
  • 14
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004). (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 15
    • 79751484450 scopus 로고    scopus 로고
    • Identifcation of miRNomes in human liver and hepatocellular carcinoma reveals miR-199a/b-3p as therapeutic target for hepatocellular carcinoma
    • Hou, J. et al. Identifcation of miRNomes in human liver and hepatocellular carcinoma reveals miR-199a/b-3p as therapeutic target for hepatocellular carcinoma. Cancer Cell 19, 232-243 (2011).
    • (2011) Cancer Cell , vol.19 , pp. 232-243
    • Hou, J.1
  • 16
    • 79959892847 scopus 로고    scopus 로고
    • Genome-wide identifcation of micro-ribonucleic acids associated with human endometrial receptivity in natural and stimulated cycles by deep sequencing
    • Sha, A. G. et al. Genome-wide identifcation of micro-ribonucleic acids associated with human endometrial receptivity in natural and stimulated cycles by deep sequencing. Fertil Steril 96, 150-155e155 (2011).
    • (2011) Fertil Steril , vol.96
    • Sha, A.G.1
  • 17
    • 77953915915 scopus 로고    scopus 로고
    • Regulation of microRNA expression and abundance during lymphopoiesis
    • Kuchen, S. et al. Regulation of microRNA expression and abundance during lymphopoiesis. Immunity 32, 828-839 (2010).
    • (2010) Immunity , vol.32 , pp. 828-839
    • Kuchen, S.1
  • 18
    • 68749113985 scopus 로고    scopus 로고
    • Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
    • Mayr, C. & Bartel, D. P. Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 138, 673-684 (2009).
    • (2009) Cell , vol.138 , pp. 673-684
    • Mayr, C.1    Bartel, D.P.2
  • 20
    • 38349081145 scopus 로고    scopus 로고
    • Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA strands in fies
    • Seitz, H., Ghildiyal, M. & Zamore, P. D. Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA strands in fies. Curr. Biol. 18, 147-151 (2008).
    • (2008) Curr. Biol. , vol.18 , pp. 147-151
    • Seitz, H.1    Ghildiyal, M.2    Zamore, P.D.3
  • 21
    • 77956278708 scopus 로고    scopus 로고
    • Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers
    • Liao, J. Y. et al. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. PLoS One 5, e10563 (2010).
    • (2010) PLoS One , vol.5
    • Liao, J.Y.1
  • 23
    • 70349690162 scopus 로고    scopus 로고
    • Ago2 immunoprecipitation identifes predicted microRNAs in human embryonic stem cells and neural precursors
    • Gof, L. A. et al. Ago2 immunoprecipitation identifes predicted microRNAs in human embryonic stem cells and neural precursors. PLoS One 4, e7192 (2009).
    • (2009) PLoS One , vol.4
    • Gof, L.A.1
  • 24
    • 78649255480 scopus 로고    scopus 로고
    • A comprehensive survey of 3' animal miRNA modifcation events and a possible role for 3' adenylation in modulating miRNA targeting efectiveness
    • Burroughs, A. M. et al. A comprehensive survey of 3' animal miRNA modifcation events and a possible role for 3' adenylation in modulating miRNA targeting efectiveness. Genome Res. 20, 1398-1410 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1398-1410
    • Burroughs, A.M.1
  • 25
    • 41149140876 scopus 로고    scopus 로고
    • The fine-scale and complex architecture of human copy-number variation
    • Perry, G. H. et al. The fine-scale and complex architecture of human copy-number variation. Am J. Hum. Genet. 82, 685-695 (2008).
    • (2008) Am J. Hum. Genet. , vol.82 , pp. 685-695
    • Perry, G.H.1
  • 26
    • 15944414175 scopus 로고    scopus 로고
    • The human genome diversity project: Past, present and future
    • DOI 10.1038/nrg1596
    • Cavalli-Sforza, L. L. The Human Genome Diversity Project: past, present and future. Nat Rev. Genet 6, 333-340 (2005). (Pubitemid 40469052)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.4 , pp. 333-340
    • Cavalli-Sforza, L.L.1
  • 28
    • 70350000602 scopus 로고    scopus 로고
    • TargetMiner: MicroRNA target prediction with systematic identifcation of tissue-specifc negative examples
    • Bandyopadhyay S. & Mitra, R. TargetMiner: microRNA target prediction with systematic identifcation of tissue-specifc negative examples. Bioinformatics 25, 2625-2631 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2625-2631
    • Bandyopadhyay, S.1    Mitra, R.2
  • 29
    • 78650649986 scopus 로고    scopus 로고
    • A two-step site and mRNA-level model for predicting microRNA targets
    • Saito, T. & Saetrom, P. A two-step site and mRNA-level model for predicting microRNA targets. BMC Bioinformatics 11, 612 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 612
    • Saito, T.1    Saetrom, P.2
  • 30
    • 38849145861 scopus 로고    scopus 로고
    • Prediction of both conserved and nonconserved microRNA targets in animals
    • DOI 10.1093/bioinformatics/btm595
    • Wang, X. & El Naqa, I. M. Prediction of both conserved and nonconserved microRNA targets in animals. Bioinformatics 24, 325-332 (2008). (Pubitemid 351189007)
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 325-332
    • Wang, X.1    El Naqa, I.M.2
  • 31
    • 77955963884 scopus 로고    scopus 로고
    • Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
    • Betel, D., Koppal, A., Agius, P, Sander, C. & Leslie, C. Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biol. 11, R90 (2010).
    • (2010) Genome Biol , vol.11
    • Betel, D.1    Koppal, A.2    Agius, P.3    Sander, C.4    Leslie, C.5
  • 32
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • DOI 10.1038/ng2135, PII NG2135
    • Kertesz, M., Iovino, N., Unnerstall, U., Gaul, U. & Segal, E. The role of site accessibility in microRNA target recognition. Nat Genet 39, 1278-1284 (2007). (Pubitemid 47482690)
    • (2007) Nature Genetics , vol.39 , Issue.10 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 33
    • 79956308325 scopus 로고    scopus 로고
    • Mechanisms and functions of Hedgehog signalling across the metazoa
    • Ingham, P. W., Nakano, Y. & Seger, C. Mechanisms and functions of Hedgehog signalling across the metazoa. Nat. Rev. Genet. 12, 393-406 (2011).
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 393-406
    • Ingham, P.W.1    Nakano, Y.2    Seger, C.3
  • 34
    • 33244464562 scopus 로고    scopus 로고
    • Critical nodes in signalling pathways: Insights into insulin action
    • DOI 10.1038/nrm1837, PII NRM1837
    • Taniguchi, C. M., Emanuelli, B. & Kahn, C. R. Critical nodes in signalling pathways: insights into insulin action. Nat Rev. Mol. Cell Biol. 7, 85-96 (2006). (Pubitemid 43278292)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.2 , pp. 85-96
    • Taniguchi, C.M.1    Emanuelli, B.2    Kahn, C.R.3
  • 35
    • 38349118916 scopus 로고    scopus 로고
    • RNA-binding protein Dnd1 inhibits microRNA access to target mRNA
    • Kedde, M. et al. RNA-binding protein Dnd1 inhibits microRNA access to target mRNA. Cell 131, 1273-1286 (2007).
    • (2007) Cell , vol.131 , pp. 1273-1286
    • Kedde, M.1
  • 36
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman, R. C., Farh, K. K., Burge, C. B. & Bartel, D. P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 19, 92-105 (2009).
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 37
    • 77955622855 scopus 로고    scopus 로고
    • Adverse interactions between micro-RNAs and target genes from diferent species
    • Tang, T. et al. Adverse interactions between micro-RNAs and target genes from diferent species. Proc. Natl Acad. Sci. USA 107, 12935-12940 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 12935-12940
    • Tang, T.1
  • 38
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • DOI 10.1038/nrg1990, PII NRG1990
    • Chen, K. & Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nat Rev. Genet 8, 93-103 (2007). (Pubitemid 46122839)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.2 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 39
    • 76549115951 scopus 로고    scopus 로고
    • Evolution in health and medicine Sackler colloquium: Evolution of the human lifespan and diseases of aging: Roles of infection, infammation, and nutrition
    • Finch, C. E. Evolution in health and medicine Sackler colloquium: Evolution of the human lifespan and diseases of aging: roles of infection, infammation, and nutrition. Proc Natl Acad Sci USA 107(Suppl 1), 1718-1724 (2010).
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.SUPPL. 1 , pp. 1718-1724
    • Finch, C.E.1
  • 40
    • 0027771804 scopus 로고
    • A C. elegans mutant that lives twice as long as wild type
    • DOI 10.1038/366461a0
    • Kenyon, C., Chang, J., Gensch, E., Rudner, A. & Tabtiang, R. A C. elegans mutant that lives twice as long as wild type. Nature 366, 461-464 (1993). (Pubitemid 24013878)
    • (1993) Nature , vol.366 , Issue.6454 , pp. 461-464
    • Kenyon, C.1    Chang, J.2    Gensch, E.3    Rudner, A.4    Tabtiang, R.5
  • 41
    • 70350359126 scopus 로고    scopus 로고
    • 3A with longevity trait in Han Chinese populations
    • 3A with longevity trait in Han Chinese populations. Hum. Mol. Genet 18, 4897-4904 (2009).
    • (2009) Hum. Mol. Genet , vol.18 , pp. 4897-4904
    • Li, Y.1
  • 42
    • 77953780835 scopus 로고    scopus 로고
    • MicroRNA-33 and the SREBP host genes cooperate to control cholesterol homeostasis
    • Najaf-Shoushtari, S. H. et al. MicroRNA-33 and the SREBP host genes cooperate to control cholesterol homeostasis. Science 328, 1566-1569 (2010).
    • (2010) Science , vol.328 , pp. 1566-1569
    • Najaf-Shoushtari, S.H.1
  • 45
    • 27544507306 scopus 로고    scopus 로고
    • α-Synuclein cooperates with CSPα in preventing neurodegeneration
    • DOI 10.1016/j.cell.2005.09.028, PII S0092867405010226
    • Chandra, S., Gallardo, G., Fernandez-Chacon, R., Schluter, O. M. & Sudhof, T. C. Alpha-synuclein cooperates with CSPalpha in preventing neurodegeneration. Cell 123, 383-396 (2005). (Pubitemid 41546670)
    • (2005) Cell , vol.123 , Issue.3 , pp. 383-396
    • Chandra, S.1    Gallardo, G.2    Fernandez-Chacon, R.3    Schluter, O.M.4    Sudhof, T.C.5
  • 46
    • 79955557706 scopus 로고    scopus 로고
    • Neurons show distinctive DNA methylation profle and higher interindividual variations compared with non-neurons
    • Iwamoto, K. et al. Neurons show distinctive DNA methylation profle and higher interindividual variations compared with non-neurons. Genome Res. 21, 688-696 (2011).
    • (2011) Genome Res , vol.21 , pp. 688-696
    • Iwamoto, K.1
  • 47
    • 0025516434 scopus 로고
    • A cysteine-string protein is expressed in retina and brain of Drosophila
    • Zinsmaier, K. E. et al. A cysteine-string protein is expressed in retina and brain of Drosophila. J. Neurogenet 7, 15-29 (1990).
    • (1990) J. Neurogenet , vol.7 , pp. 15-29
    • Zinsmaier, K.E.1
  • 48
    • 45349099273 scopus 로고    scopus 로고
    • Cysteine string protein-α is essential for the high calcium sensitivity of exocytosis in a vertebrate synapse
    • DOI 10.1111/j.1460-9568.2008.06301.x
    • Ruiz, R., Casanas, J. J., Sudhof, T. C. & Tabares, L. Cysteine string protein-alpha is essential for the high calcium sensitivity of exocytosis in a vertebrate synapse. Eur. J. Neurosci 27, 3118-3131 (2008). (Pubitemid 351847322)
    • (2008) European Journal of Neuroscience , vol.27 , Issue.12 , pp. 3118-3131
    • Ruiz, R.1    Casanas, J.J.2    Sudhof, T.C.3    Tabares, L.4
  • 49
    • 78650034777 scopus 로고    scopus 로고
    • Towards a knowledge-based Human Protein Atlas
    • Uhlen, M. et al. Towards a knowledge-based Human Protein Atlas. Nat Biotechnol. 28, 1248-1250 (2010).
    • (2010) Nat Biotechnol , vol.28 , pp. 1248-1250
    • Uhlen, M.1
  • 50
    • 0028281387 scopus 로고
    • Paralysis and early death in cysteine string protein mutants of Drosophila
    • Zinsmaier, K. E., Eberle, K. K., Buchner, E., Walter, N. & Benzer, S. Paralysis and early death in cysteine string protein mutants of Drosophila. Science 263, 977-980 (1994). (Pubitemid 24094564)
    • (1994) Science , vol.263 , Issue.5149 , pp. 977-980
    • Zinsmaier, K.E.1    Eberle, K.K.2    Buchner, E.3    Walter, N.4    Benzer, S.5
  • 52
    • 80455149806 scopus 로고    scopus 로고
    • Exome-sequencing confrms DNAJC5 mutations as cause of adult neuronal ceroid-lipofuscinosis
    • Benitez, B. A. et al. Exome-sequencing confrms DNAJC5 mutations as cause of adult neuronal ceroid-lipofuscinosis. PLoS One 6, e26741.
    • PLoS One , vol.6
    • Benitez, B.A.1
  • 55
    • 77957909505 scopus 로고    scopus 로고
    • A genotype-frst approach for the molecular and clinical characterization of uncommon de novo microdeletion of 20q13.33
    • Traylor, R. N. et al. A genotype-frst approach for the molecular and clinical characterization of uncommon de novo microdeletion of 20q13.33. PLoS One 5, e12462 (2010).
    • (2010) PLoS One , vol.5
    • Traylor, R.N.1
  • 56
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structure
    • McCaskill, J. S. The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers 29, 1105-1119 (1990). (Pubitemid 20145703)
    • (1990) Biopolymers , vol.29 , Issue.6-7 , pp. 1105-1119
    • McCaskill, J.S.1
  • 57
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Find statistically overrepresented Gene Ontologies with a group of genes
    • DOI 10.1093/bioinformatics/bth088
    • Beissbarth, T. & Speed, T. P. GOstat: fnd statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 20, 1464-1465 (2004). (Pubitemid 38931420)
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 58
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk, D. et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39, D561-568 (2011).
    • (2011) Nucleic Acids Res. , vol.39
    • Szklarczyk, D.1


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