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Volumn 30, Issue 9, 2014, Pages 1280-1286

Automatic identification of mixed bacterial species fingerprints in a MALDI-TOF mass-spectrum

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOMATION; CHEMISTRY; GENETIC DATABASE; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METHODOLOGY; STATISTICAL MODEL;

EID: 84899509206     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu022     Document Type: Article
Times cited : (61)

References (23)
  • 1
    • 0000114030 scopus 로고
    • Identification of bacteria using mass spectrometry
    • Anhalt, J. and Fenselau, C. (1975) Identification of bacteria using mass spectrometry. Anal. Chem., 47, 219-225.
    • (1975) Anal. Chem. , vol.47 , pp. 219-225
    • Anhalt, J.1    Fenselau, C.2
  • 2
    • 80052230956 scopus 로고    scopus 로고
    • Using matrix-assisted laser desorption ionization-time of flight mass spectrometry to detect carbapenem resistance within 1 to 2.5 hours
    • Burckhardt, I. and Zimmermann, S. (2011) Using matrix-assisted laser desorption ionization-time of flight mass spectrometry to detect carbapenem resistance within 1 to 2.5 hours. J. Clin. Microbiol., 49, 3321-3324.
    • (2011) J. Clin. Microbiol. , vol.49 , pp. 3321-3324
    • Burckhardt, I.1    Zimmermann, S.2
  • 3
    • 77950462078 scopus 로고    scopus 로고
    • Comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry methods with conventional phenotypic identification for routine identification of bacteria to the species level
    • Cherkaoui, A. et al. (2010) Comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry methods with conventional phenotypic identification for routine identification of bacteria to the species level. J. Clin. Microbiol., 48, 1169-1175.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 1169-1175
    • Cherkaoui, A.1
  • 4
    • 0029998033 scopus 로고    scopus 로고
    • The rapid identification of intact microorganisms using mass spectrometry
    • Claydon, M. et al. (1996) The rapid identification of intact microorganisms using mass spectrometry. Nat. Biotechnol., 14, 1584-1586.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 1584-1586
    • Claydon, M.1
  • 5
    • 84919841598 scopus 로고    scopus 로고
    • Pre-Processing mass spectrometry data
    • In: Dubitzky, W. et al. (eds). Springer, US
    • Coombes, K.R. et al. (2007) Pre-Processing mass spectrometry data. In: Dubitzky, W. et al. (eds) Fundamentals of Data Mining in Genomics and Proteomics. Springer, US, pp. 79-102.
    • (2007) Fundamentals of Data Mining in Genomics and Proteomics , pp. 79-102
    • Coombes, K.R.1
  • 6
    • 79951678105 scopus 로고    scopus 로고
    • Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning
    • De Bruyne, K. et al. (2011) Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning. Syst. Appl. Microbiol., 34, 20-29.
    • (2011) Syst. Appl. Microbiol. , vol.34 , pp. 20-29
    • De Bruyne, K.1
  • 8
    • 3242708140 scopus 로고    scopus 로고
    • Least angle regression
    • Efron, B. et al. (2004) Least angle regression. Ann. Stat., 32, 407-499.
    • (2004) Ann. Stat. , vol.32 , pp. 407-499
    • Efron, B.1
  • 9
    • 84874074475 scopus 로고    scopus 로고
    • Rapid identification of bacteria and yeasts from positiveblood-culture bottles by using a lysis-filtration method and matrix-assisted laser desorption ionization-time of flight mass spectrum analysis with the saramis database
    • Fothergill, A. et al. (2013) Rapid identification of bacteria and yeasts from positiveblood-culture bottles by using a lysis-filtration method and matrix-assisted laser desorption ionization-time of flight mass spectrum analysis with the saramis database. J. Clin. Microbiol., 51, 805-809.
    • (2013) J. Clin. Microbiol. , vol.51 , pp. 805-809
    • Fothergill, A.1
  • 10
    • 82455174840 scopus 로고    scopus 로고
    • Cost-effectiveness of switch to matrix-assisted laser desorption ionization-time of flight mass spectrometry for routine bacterial identification
    • Gaillot, O. et al. (2011) Cost-effectiveness of switch to matrix-assisted laser desorption ionization-time of flight mass spectrometry for routine bacterial identification. J. Clin. Microbiol., 49, 4412-4412.
    • (2011) J. Clin. Microbiol. , vol.49 , pp. 4412-4412
    • Gaillot, O.1
  • 11
    • 0034653589 scopus 로고    scopus 로고
    • An algorithm for automated bacterial identification using matrix-assisted laser desorption/ionization mass spectrometry
    • Jarman, K. et al. (2000) An algorithm for automated bacterial identification using matrix-assisted laser desorption/ionization mass spectrometry. Anal. Chem., 72, 1217-1223.
    • (2000) Anal. Chem. , vol.72 , pp. 1217-1223
    • Jarman, K.1
  • 12
    • 84857067535 scopus 로고    scopus 로고
    • Direct identification of bacteria in urine samples by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and relevance of defensins as interfering factors
    • Kohling, H. et al. (2012) Direct identification of bacteria in urine samples by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and relevance of defensins as interfering factors. J. Med. Microbiol., 61, 339-344.
    • (2012) J. Med. Microbiol. , vol.61 , pp. 339-344
    • Kohling, H.1
  • 13
    • 80051677037 scopus 로고    scopus 로고
    • Identification of bacteria in blood culture broths using matrixassisted laser desorption-ionization sepsityper and time of flight mass spectrometry
    • Kok, J. et al. (2011) Identification of bacteria in blood culture broths using matrixassisted laser desorption-ionization sepsityper and time of flight mass spectrometry. PLoS One, 6, e23285.
    • (2011) PLoS One , vol.6
    • Kok, J.1
  • 14
    • 84866450171 scopus 로고    scopus 로고
    • Identification of blood culture isolates directly from positive blood cultures by use of matrix-assisted laser desorption ionizationtime of flight mass spectrometry and a commercial extraction system: Analysis of performance, cost, and turnaround time
    • Lagacé-Wiens, P. et al. (2012) Identification of blood culture isolates directly from positive blood cultures by use of matrix-assisted laser desorption ionizationtime of flight mass spectrometry and a commercial extraction system: analysis of performance, cost, and turnaround time. J. Clin. Microbiol., 50, 3324-3328.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 3324-3328
    • Lagacé-Wiens, P.1
  • 15
    • 84871725334 scopus 로고    scopus 로고
    • Metagenomic abundance estimation and diagnostic testing on species level
    • Lindner, M.S. and Renard, B.Y. (2012) Metagenomic abundance estimation and diagnostic testing on species level. Nucleic Acids Res., 41, e10.
    • (2012) Nucleic Acids Res. , vol.41
    • Lindner, M.S.1    Renard, B.Y.2
  • 16
    • 84858594531 scopus 로고    scopus 로고
    • Comparison of the Microflex LT and VitekMS systems for routine identification of bacteria by matrix-assisted laser desorption ionizationtime of flight mass spectrometry
    • Martiny, D. et al. (2012) Comparison of the Microflex LT and VitekMS systems for routine identification of bacteria by matrix-assisted laser desorption ionizationtime of flight mass spectrometry. J. Clin. Microbiol., 50, 1313-1325.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 1313-1325
    • Martiny, D.1
  • 17
    • 10244239405 scopus 로고    scopus 로고
    • Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens
    • Satten, G. et al. (2004) Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens. Bioinformatics, 20, 3128-3136.
    • (2004) Bioinformatics , vol.20 , pp. 3128-3136
    • Satten, G.1
  • 19
    • 84866460224 scopus 로고    scopus 로고
    • Prospective evaluation of a matrix-assisted laser desorption ionization-time of flight mass spectrometry system in a hospital clinical microbiology laboratory for identification of bacteria and yeasts: A bench-by-bench study for assessing the impact on time to identification and cost-effectiveness
    • Tan, K. et al. (2012) Prospective evaluation of a matrix-assisted laser desorption ionization-time of flight mass spectrometry system in a hospital clinical microbiology laboratory for identification of bacteria and yeasts: a bench-by-bench study for assessing the impact on time to identification and cost-effectiveness. J. Clin. Microbiol., 50, 3301-3308.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 3301-3308
    • Tan, K.1
  • 20
    • 84860015342 scopus 로고    scopus 로고
    • Biomedical mass spectrometry in today's and tomorrow's clinical microbiology laboratories
    • van Belkum, A. et al. (2012) Biomedical mass spectrometry in today's and tomorrow's clinical microbiology laboratories. J. Clin. Microbiol., 50, 1513-1517.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 1513-1517
    • Van Belkum, A.1
  • 21
    • 42049122152 scopus 로고    scopus 로고
    • Classification of mass-spectrometric data in clinical proteomics using learning vector quantization methods
    • Villmann, T. et al. (2008) Classification of mass-spectrometric data in clinical proteomics using learning vector quantization methods. Brief. Bioinform., 9, 129-143.
    • (2008) Brief. Bioinform. , vol.9 , pp. 129-143
    • Villmann, T.1
  • 22
    • 0037115607 scopus 로고    scopus 로고
    • Analysis of microbial mixtures by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Wahl, K. et al. (2002) Analysis of microbial mixtures by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal. Chem, 74, 6191-6199.
    • (2002) Anal. Chem , vol.74 , pp. 6191-6199
    • Wahl, K.1
  • 23
    • 16244401458 scopus 로고    scopus 로고
    • Regularization and variable selection via the elastic net
    • Zou, H. and Hastie, T. (2005) Regularization and variable selection via the elastic net. J. R. Stat. Soc. B, 67, 301-320.
    • (2005) J. R. Stat. Soc. B , vol.67 , pp. 301-320
    • Zou, H.1    Hastie, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.