Characterization of 3-phosphoglycerate kinase from Corynebacterium glutamicum and its impact on amino acid production

BMC Microbiology

Volumn 14, Issue 1, 2014, Pages

  Reddy, Gajendar Komati ^a   Wendisch, Volker F ^a  

^a BIELEFELD UNIVERSITY   (Germany)

Author keywords

Amino acid productivity; Arginine production; Corynebacterium; Glycolysis; Homo dimeric Phosphoglycerate kinase; Ornithine production

Indexed keywords

ARGININE; BACTERIAL ENZYME; CARBON; GLUCOSE; HOMODIMER; LYSINE; ORNITHINE; PHOSPHOGLYCERATE KINASE; PROLINE; PYRUVIC ACID; RECOMBINANT ENZYME; ADENOSINE TRIPHOSPHATE; AMINO ACID;

AMINO ACID SEQUENCE; AMINO ACID SYNTHESIS; ARTICLE; BACTERIAL STRAIN; CARBON SOURCE; CONTROLLED STUDY; CORYNEBACTERIUM GLUTAMICUM; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME PURIFICATION; GEL FILTRATION CHROMATOGRAPHY; GENE OVEREXPRESSION; GLUCOSE INTAKE; GLYCOLYSIS; HINGE REGION; MICHAELIS MENTEN KINETICS; MOLECULAR WEIGHT; NONHUMAN; PH; PHYLOGENY; DELETION MUTANT; ESCHERICHIA COLI; PROTEIN EXPRESSION;

BACTERIA (MICROORGANISMS); CORYNEBACTERIUM; CORYNEBACTERIUM GLUTAMICUM;

ADENOSINE DIPHOSPHATE; AMINO ACIDS; COENZYMES; CORYNEBACTERIUM GLUTAMICUM; DIPHOSPHOGLYCERIC ACIDS; ENZYME STABILITY; ESCHERICHIA COLI; GENE DELETION; GLYCOLYSIS; HYDROGEN-ION CONCENTRATION; KINETICS; MAGNESIUM; MOLECULAR WEIGHT; PHOSPHOGLYCERATE KINASE; PROTEIN MULTIMERIZATION; RECOMBINANT PROTEINS;

EID: 84899477995     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-14-54     Document Type: Article

References (61)

1. Central carbon metabolism as a minimal biochemical walk between precursors for biomass and energy. Noor E, Eden E, Milo R, Alon U, Mol Cell 2010 39 809 820
2. Crystal structure of Plasmodium falciparum phosphoglycerate kinase: evidence for anion binding in the basic patch. Smith CD, Chattopadhyay D, Pal B, Biochem Biophys Res Commun 2011 412 203 206
3. Phylogenetic framework and molecular signatures for the main clades of the phylum actinobacteria. Gao B, Gupta RS, Microbiol Mol Biol Rev 2012 76 66 112
4. Corynebacterium glutamicum as a host for synthesis and export of D-Amino Acids. Stabler N, Oikawa T, Bott M, Eggeling L, J Bacteriol 2011 193 1702 1709
5. Metabolic engineering of Escherichia coli and Corynebacterium glutamicum for biotechnological production of organic acids and amino acids. Wendisch VF, Bott M, Eikmanns BJ, Curr Opin Microbiol 2006 9 268 274
6. Production of the amino acids L-glutamate, -lysine, -ornithine and l-arginine from arabinose by recombinant Corynebacterium glutamicum. Schneider J, Niermann K, Wendisch VF, J Biotechnol 2011 154 191 198
7. Acetohydroxyacid synthase, a novel target for improvement of L-lysine production by Corynebacterium glutamicum. Blombach B, Hans S, Bathe B, Eikmanns BJ, Appl Environ Microbiol 2009 75 419 427
8. Bio-based production of organic acids with Corynebacterium glutamicum. Wieschalka S, Blombach B, Bott M, Eikmanns BJ, Microb Biotechnol 2013 6 87 102
9. Metabolic engineering of Corynebacterium glutamicum for production of 1,5-diaminopentane from hemicellulose. Buschke N, Schroder H, Wittmann C, Biotechnol J 2011 6 306 317
10. Crude glycerol-based production of amino acids and putrescine by Corynebacterium glutamicum. Meiswinkel TM, Rittmann D, Lindner SN, Wendisch VF, Bioresour Technol 2013 145 254 258
11. Ornithine cyclodeaminase-based proline production by Corynebacterium glutamicum. Jensen JV, Wendisch VF, Microb Cell Fact 2013 12 63
12. Improvement of cell growth and L-lysine production by genetically modified Corynebacterium glutamicum during growth on molasses. Xu J, Zhang J, Guo Y, Zai Y, Zhang W, J Ind Microbiol Biotechnol 2013 40 1423 1432 doi:10.1007/s10295-013-1329-8. Epub 2013 Sep 13
13. Genetic regulation of Corynebacterium glutamicum metabolism. Wendisch VF, J Microbiol Biotechnol 2006 16 7 999 1009
14. Identification, sequence analysis, and expression of a Corynebacterium glutamicum gene cluster encoding the three glycolytic enzymes glyceraldehyde-3-phosphate dehydrogenase, 3-phosphoglycerate kinase, and triosephosphate isomerase. Eikmanns BJ, J Bacteriol 1992 174 6076 6086
15. Transcriptional analysis of the gap-pgk-tpi-ppc gene cluster of Corynebacterium glutamicum. Schwinde JW, Thum-Schmitz N, Eikmanns BJ, Sahm H, J Bacteriol 1993 175 3905 3908
16. Involvement of regulatory interactions among global regulators GlxR, SugR, and RamA in expression of ramA in Corynebacterium glutamicum. Toyoda K, Teramoto H, Gunji W, Inui M, Yukawa H, J Bacteriol 2013 195 1718 1726
17. The global repressor SugR controls expression of genes of glycolysis and of the L-lactate dehydrogenase LdhA in Corynebacterium glutamicum. Engels V, Lindner SN, Wendisch VF, J Bacteriol 2008 190 8033 8044
18. Expression of the gapA gene encoding glyceraldehyde-3-phosphate dehydrogenase of Corynebacterium glutamicum is regulated by the global regulator SugR. Toyoda K, Teramoto H, Inui M, Yukawa H, Appl Microbiol Biotechnol 2008 81 291 301
19. 3-Phosphoglycerate kinase and triose phosphate isomerase from hyperthermophilic Archaea: features of biochemical thermoadaptation. Hensel R, Schramm A, Hess D, Russell RJM, Thermophiles: the key to molecular evolution and the origin of life? London, UK: CRC Press, Taylor & Francis, Wiegel A, 1998 311 323
20. Glycolytic enzymes of Trypanosoma brucei. Simultaneous purification, intraglycosomal concentrations and physical properties. Misset O, Bos OJ, Opperdoes FR, Eur J Biochem 1986 157 441 453
21. Crystal structures of substrates and products bound to the phosphoglycerate kinase active site reveal the catalytic mechanism. Bernstein BE, Hol WG, Biochemistry 1998 37 4429 4436
22. Dimeric 3-phosphoglycerate kinases from hyperthermophilic Archaea. Cloning, sequencing and expression of the 3-phosphoglycerate kinase gene of Pyrococcus woesei in Escherichia coli and characterization of the protein. Structural and functional comparison. Hess D, Kruger K, Knappik A, Palm P, Hensel R, Eur J Biochem 1995 233 227 237
23. Purification and characterisation of the phosphoglycerate kinase isoenzymes of Trypanosoma brucei expressed in Escherichia coli. Zomer AW, Allert S, Chevalier N, Callens M, Opperdoes FR, Michels PA, Biochim Biophys Acta 1998 1386 179 188
24. Phosphoglycerate kinase and phosphoglyceromutase from Escherichia coli. D'Alession G, Josse J, Methods Enzym 1975 42 139 144
25. Purification of 3-phosphoglycerate kinase from diverse sources by affinity elution chromatography. Fifis T, Scopes RK, Biochem J 1978 175 311 319
26. The phosphoglycerate kinase and glyceraldehyde-3-phosphate dehydrogenase genes from the thermophilic archaeon Sulfolobus solfataricus overlap by 8-bp. Isolation, sequencing of the genes and expression in Escherichia coli. Jones CE, Fleming TM, Cowan DA, Littlechild JA, Piper PW, Eur J Biochem 1995 233 800 808
27. Purification and characterization of two isozymes of 3-phosphoglycerate kinase from the mouse. Pegoraro B, Lee CY, Biochim Biophys Acta 1978 522 423 433
28. Thermodynamic analysis of the nondenaturational conformational change of baker's yeast phosphoglycerate kinase at 24 degrees C. Ijeoma O, Hollowell HN, Bodnar MA, Britt BM, Arch Biochem Biophys 2008 478 206 211
29. Hydrophobic interaction at the subunit interface contributes to the thermostability of 3-isopropylmalate dehydrogenase from an extreme thermophile, Thermus thermophilus. Kirino H, Aoki M, Aoshima M, Hayashi Y, Ohba M, Yamagishi A, Wakagi T, Oshima T, Eur J Biochem 1994 220 275 281
30. Site-directed mutagenesis of proline 204 in the "hinge" region of yeast phosphoglycerate kinase. McHarg J, Kelly SM, Price NC, Cooper A, Littlechild JA, Eur J Biochem 1999 259 939 945
31. Communication between the nucleotide site and the main molecular hinge of 3-phosphoglycerate kinase. Szabo J, Varga A, Flachner B, Konarev PV, Svergun DI, Zavodszky P, Vas M, Biochemistry 2008 47 6735 6744
32. Purification and characterization of 3-phosphoglycerate kinase from Ehrlich ascites carcinoma cells. Mukherjee K, Ghosh S, Ray M, Ray S, Indian J Biochem Biophys 2002 39 332 341
33. 3-Phosphoglycerate kinase isozymes and genetic variants from mouse. Lee CY, Methods Enzym 1982 90 Pt E 121 126
34. A new regulatory principle for in vivo biochemistry: Pleiotropic low affinity regulation by the adenine nucleotides-Illustrated for the glycolytic enzymes of Saccharomyces cerevisiae. Mensonides FIC, Bakker BM, Cremazy F, Messiha HL, Mendes P, Boogerd FC, Westerhoff HV, FEBS Lett 2013 587 2860 2867
35. Structural, kinetic, and calorimetric characterization of the cold-active phosphoglycerate kinase from the antarctic Pseudomonas sp. TACII18. Bentahir M, Feller G, Aittaleb M, Lamotte-Brasseur J, Himri T, Chessa JP, Gerday C, J Biol Chem 2000 275 11147 11153
36. Changes of pentose phosphate pathway flux in vivo in Corynebacterium glutamicum during leucine-limited batch cultivation as determined from intracellular metabolite concentration measurements. Moritz B, Striegel K, de Graaf AA, Sahm H, Metab Eng 2002 4 295 305
37. Inhibition of phosphoglycerate kinase by products and product homologues. Larsson-Raznikiewicz M, Arvidsson L, Eur J Biochem 1971 22 506 512
38. The methylotrophic Bacillus methanolicus MGA3 possesses two distinct fructose 1,6-bisphosphate aldolases. Stolzenberger J, Lindner SN, Wendisch VF, Microbiology 2013 159 1770 1781
39. Untersuchungen zur Glykolyse und zum L-Serin-Stoffwechsel in Corynebacterium glutamicum. Netzer R, Berichte des Forschungszentrums Jülich 2004 4130 1 141 ISSN 0944-2952
40. Corynebacterium glutamicum glyceraldehyde-3-phosphate dehydrogenase isoforms with opposite, ATP-dependent regulation. Omumasaba CA, Okai N, Inui M, Yukawa H, J Mol Microbiol Biotechnol 2004 8 91 103
41. Characterization of the phosphoenolpyruvate carboxykinase gene from Corynebacterium glutamicum and significance of the enzyme for growth and amino acid production. Riedel C, Rittmann D, Dangel P, Möckel B, Petersen S, Sahm H, Eikmanns BJ, J Mol Microbiol Biotechnol 2001 3 573 583
42. Fructose-1,6-bisphosphatase from Corynebacterium glutamicum: expression and deletion of the fbp gene and biochemical characterization of the enzyme. Rittmann D, Schaffer S, Wendisch VF, Sahm H, Arch Microbiol 2003 180 285 292
43. Roles of pyruvate kinase and malic enzyme in Corynebacterium glutamicum for growth on carbon sources requiring gluconeogenesis. Netzer R, Krause M, Rittmann D, Peters-Wendisch PG, Eggeling L, Wendisch VF, Sahm H, Arch Microbiol 2004 182 354 363
44. Reductive whole-cell biotransformation with Corynebacterium glutamicum: improvement of NADPH generation from glucose by a cyclized pentose phosphate pathway using pfkA and gapA deletion mutants. Siedler S, Lindner SN, Bringer S, Wendisch VF, Bott M, Appl Microbiol Biotechnol 2012 97 143 152
45. Importance of NADPH supply for improved L-valine formation in Corynebacterium glutamicum. Bartek T, Blombach B, Zonnchen E, Makus P, Lang S, Eikmanns BJ, Oldiges M, Biotechnol Prog 2010 26 361 371
46. Metabolic flux engineering of L-lysine production in Corynebacterium glutamicum-over expression and modification of G6P dehydrogenase. Becker J, Klopprogge C, Herold A, Zelder O, Bolten CJ, Wittmann C, J Biotechnol 2007 132 99 109
47. Lysine and glutamate production by Corynebacterium glutamicum on glucose, fructose and sucrose: roles of malic enzyme and fructose-1,6-bisphosphatase. Georgi T, Rittmann D, Wendisch VF, Metab Eng 2005 7 291 301
48. Reactions upstream of glycerate-1,3-bisphosphate drive Corynebacterium glutamicum D-lactate productivity under oxygen deprivation. Tsuge Y, Yamamoto S, Suda M, Inui M, Yukawa H, Appl Microbiol Biotechnol 2013 97 6693 6703
49. Toward homosuccinate fermentation: metabolic engineering of glucose and formate. Litsanov B, Brocker M, Bott M, Appl Environ Microbiol 2012 78 9 3325 3337
50. Overexpression of genes encoding glycolytic enzymes in Corynebacterium glutamicum enhances glucose metabolism and alanine production under oxygen deprivation conditions. Yamamoto S, Gunji W, Suzuki H, Toda H, Suda M, Jojima T, Inui M, Yukawa H, Appl Environ Microbiol 2012 78 12 4447 4457
51. Taxonomical studies on glutamic acid producing bacteria. Abe Takayarna K, Kinoshita SS, J Gen Appl Microbiol 1967 13 279 301
52. Putrescine production by engineered Corynebacterium glutamicum. Schneider J, Wendisch VF, Appl Microbiol Biotechnol 2010 88 859 868
53. Sambrook J, Fitsch EF, Maniatis T, Molecular cloning: a laboratory manual Cold Spring Harbor: Cold Spring Harbor Press 1989
54. Studies on transformation of Escherichia coli with plasmids. Hanahan D, J Mol Biol 1983 166 557 580
55. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. Studier FW, Moffatt BA, J Mol Biol 1986 189 113 130
56. Handbook of Corynebacterium glutamicum Boca Raton: CRC Press LLC, Eggeling LBM, 2005
57. Characterization of a Corynebacterium glutamicum lactate utilization operon induced during temperature-triggered glutamate production. Stansen C, Uy D, Delaunay S, Eggeling L, Goergen JL, Wendisch VF, Appl Env Microbiol 2005 71 5920 5928
58. Pyruvate carboxylase is a major bottleneck for glutamate and lysine production by Corynebacterium glutamicum. Peters-Wendisch PG, Schiel B, Wendisch VF, Katsoulidis E, Mockel B, Sahm H, Eikmanns BJ, J Mol Microbiol Biotechnol 2001 3 295 300
59. Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Schafer A, Tauch A, Jager W, Kalinowski J, Thierbach G, Puhler A, Gene 1994 145 69 73
60. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Thompson JD, Higgins DG, Gibson TJ, Nucleic Acids Res 1994 22 4673 4680
61. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Saitou N, Nei M, Mol Biol Evol 1987 4 406 425