-
1
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones PA (2012) Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet. 13: 484-492.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
2
-
-
84875745673
-
Interplay between the cancer genome and epigenome
-
Shen H, Laird PW (2013) Interplay between the cancer genome and epigenome. Cell. 153: 38-55.
-
(2013)
Cell
, vol.153
, pp. 38-55
-
-
Shen, H.1
Laird, P.W.2
-
3
-
-
0034626988
-
Inactivation of the DNA-repair gene MGMT and the clinical response of gliomas to alkylating agents
-
Esteller M, Garcia-Foncillas J, Andion E, Goodman SN, Hidalgo OF, et al. (2000) Inactivation of the DNA-repair gene MGMT and the clinical response of gliomas to alkylating agents. N Engl J Med. 343: 1350-1354.
-
(2000)
N Engl J Med
, vol.343
, pp. 1350-1354
-
-
Esteller, M.1
Garcia-Foncillas, J.2
Andion, E.3
Goodman, S.N.4
Hidalgo, O.F.5
-
4
-
-
75149166496
-
MGMT promoter methylation in malignant gliomas: Ready for personalized medicine?
-
Weller M, Stupp R, Reifenberger G, Brandes AA, van den Bent MJ, et al. (2010) MGMT promoter methylation in malignant gliomas: ready for personalized medicine? Nat Rev Neurol. 6: 39-51.
-
(2010)
Nat Rev Neurol
, vol.6
, pp. 39-51
-
-
Weller, M.1
Stupp, R.2
Reifenberger, G.3
Brandes, A.A.4
Van Den Bent, M.J.5
-
5
-
-
84873722466
-
Clinical utility of an epigenetic assay to detect occult prostate cancer in histopathologically negative biopsies: Results of the MATLOC study
-
Stewart GD, Van Neste L, Delvenne P, Delrée P, Delga A, et al. (2013) Clinical utility of an epigenetic assay to detect occult prostate cancer in histopathologically negative biopsies: results of the MATLOC study. J Urol. 189: 1110-1116.
-
(2013)
J Urol
, vol.189
, pp. 1110-1116
-
-
Stewart, G.D.1
Van Neste, L.2
Delvenne, P.3
Delrée, P.4
Delga, A.5
-
6
-
-
77953123406
-
Multicenter clinical validation of PITX2 methylation as a prostate specific antigen recurrence predictor in patients with post-radical prostatectomy prostate cancer
-
Bañez LL, Sun L, van Leenders GJ, Wheeler TM, Bangma CH, et al. (2010) Multicenter clinical validation of PITX2 methylation as a prostate specific antigen recurrence predictor in patients with post-radical prostatectomy prostate cancer. J Urol. 184: 149-156.
-
(2010)
J Urol
, vol.184
, pp. 149-156
-
-
Bañez, L.L.1
Sun, L.2
Van Leenders, G.J.3
Wheeler, T.M.4
Bangma, C.H.5
-
7
-
-
84874527353
-
Development and clinical validation of a real-time PCR assay for PITX2 DNA methylation to predict prostate-specific antigen recurrence in prostate cancer patients following radical prostatectomy
-
Dietrich D, Hasinger O, Bañez LL, Sun L, van Leenders GJ, et al. (2013) Development and clinical validation of a real-time PCR assay for PITX2 DNA methylation to predict prostate-specific antigen recurrence in prostate cancer patients following radical prostatectomy. J Mol Diagn. 15: 270-279.
-
(2013)
J Mol Diagn
, vol.15
, pp. 270-279
-
-
Dietrich, D.1
Hasinger, O.2
Bañez, L.L.3
Sun, L.4
Van Leenders, G.J.5
-
8
-
-
62349136443
-
DNA methylation of the PITX2 gene promoter region is a strong independent prognostic marker of biochemical recurrence in patients with prostate cancer after radical prostatectomy
-
Weiss G, Cottrell S, Distler J, Schatz P, Kristiansen G, et al. (2009) DNA methylation of the PITX2 gene promoter region is a strong independent prognostic marker of biochemical recurrence in patients with prostate cancer after radical prostatectomy. J Urol. 181: 1678-1685.
-
(2009)
J Urol
, vol.181
, pp. 1678-1685
-
-
Weiss, G.1
Cottrell, S.2
Distler, J.3
Schatz, P.4
Kristiansen, G.5
-
9
-
-
77951747373
-
Development of a diagnostic microarray assay to assess the risk of recurrence of prostate cancer based on PITX2 DNA methylation
-
Schatz P, Dietrich D, Koenig T, Burger M, Lukas A, et al. (2010) Development of a diagnostic microarray assay to assess the risk of recurrence of prostate cancer based on PITX2 DNA methylation. J Mol Diagn. 12: 345-353.
-
(2010)
J Mol Diagn
, vol.12
, pp. 345-353
-
-
Schatz, P.1
Dietrich, D.2
Koenig, T.3
Burger, M.4
Lukas, A.5
-
10
-
-
84891743167
-
Prospective evaluation of methylated SEPT9 in plasma for detection of asymptomatic colorectal cancer
-
Church TR, Wandell M, Lofton-Day C, Mongin SJ, Burger M, et al. (2014) Prospective evaluation of methylated SEPT9 in plasma for detection of asymptomatic colorectal cancer. Gut. 63: 317-325.
-
(2014)
Gut
, vol.63
, pp. 317-325
-
-
Church, T.R.1
Wandell, M.2
Lofton-Day, C.3
Mongin, S.J.4
Burger, M.5
-
11
-
-
80052967970
-
SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer in plasma
-
Kneip C, Schmidt B, Seegebarth A, Weickmann S, Fleischhacker M, et al. (2011) SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer in plasma. J Thorac Oncol. 6: 1632-1638.
-
(2011)
J Thorac Oncol
, vol.6
, pp. 1632-1638
-
-
Kneip, C.1
Schmidt, B.2
Seegebarth, A.3
Weickmann, S.4
Fleischhacker, M.5
-
12
-
-
78049345913
-
SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer based on bronchial aspirates
-
Schmidt B, Liebenberg V, Dietrich D, Schlegel T, Kneip C, et al. (2010) SHOX2 DNA methylation is a biomarker for the diagnosis of lung cancer based on bronchial aspirates. BMC Cancer. 10: 600.
-
(2010)
BMC Cancer
, vol.10
, pp. 600
-
-
Schmidt, B.1
Liebenberg, V.2
Dietrich, D.3
Schlegel, T.4
Kneip, C.5
-
13
-
-
84857159930
-
Performance evaluation of the DNA methylation biomarker SHOX2 for the aid in diagnosis of lung cancer based on the analysis of bronchial aspirates
-
Dietrich D, Kneip C, Raji O, Liloglou T, Seegebarth A, et al. (2012) Performance evaluation of the DNA methylation biomarker SHOX2 for the aid in diagnosis of lung cancer based on the analysis of bronchial aspirates. Int J Oncol. 40: 825-832.
-
(2012)
Int J Oncol
, vol.40
, pp. 825-832
-
-
Dietrich, D.1
Kneip, C.2
Raji, O.3
Liloglou, T.4
Seegebarth, A.5
-
14
-
-
84886737618
-
SHOX2 DNA methylation is a tumour marker in pleural effusions
-
Ilse P, Biesterfeld S, Pomjanski N, Fink C, Schramm M (2013) SHOX2 DNA methylation is a tumour marker in pleural effusions. Cancer Genomics Proteomics. 10: 217-223.
-
(2013)
Cancer Genomics Proteomics
, vol.10
, pp. 217-223
-
-
Ilse, P.1
Biesterfeld, S.2
Pomjanski, N.3
Fink, C.4
Schramm, M.5
-
15
-
-
84893547259
-
Diagnostic and Prognostic Value of SHOX2 and SEPT9 DNA Methylation and Cytology in Benign, Paramalignant and Malignant Pleural Effusions
-
Dietrich D, Jung M, Puetzer S, Leisse A, Holmes EE, et al. (2013) Diagnostic and Prognostic Value of SHOX2 and SEPT9 DNA Methylation and Cytology in Benign, Paramalignant and Malignant Pleural Effusions. PLoS One. 8: e84225.
-
(2013)
PLoS One
, vol.8
-
-
Dietrich, D.1
Jung, M.2
Puetzer, S.3
Leisse, A.4
Holmes, E.E.5
-
16
-
-
84887034056
-
Assessment of SHOX2 methylation in EBUS-TBNA specimen improves accuracy in lung cancer staging
-
Darwiche K, Zarogoulidis P, Baehner K, Welter S, Tetzner R, et al. (2013) Assessment of SHOX2 methylation in EBUS-TBNA specimen improves accuracy in lung cancer staging. Ann Oncol. 24: 2866-2870.
-
(2013)
Ann Oncol
, vol.24
, pp. 2866-2870
-
-
Darwiche, K.1
Zarogoulidis, P.2
Baehner, K.3
Welter, S.4
Tetzner, R.5
-
17
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer M, McDonald LE, Millar DS, Collis CM, Watt F, et al. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci U S A. 89: 1827-1831.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
Collis, C.M.4
Watt, F.5
-
18
-
-
77952967431
-
Direct detection of DNA methylation during single-molecule, real-time sequencing
-
Flusberg BA, Webster DR, Lee JH, Travers KJ, Olivares EC, et al. (2010). Direct detection of DNA methylation during single-molecule, real-time sequencing. Nat Methods. 7: 461-465.
-
(2010)
Nat Methods
, vol.7
, pp. 461-465
-
-
Flusberg, B.A.1
Webster, D.R.2
Lee, J.H.3
Travers, K.J.4
Olivares, E.C.5
-
19
-
-
77954187310
-
Bisulfite sequencing of DNA
-
Chapter 7: Unit 7.9
-
Darst RP, Pardo CE, Ai L, Brown KD, Kladde MP (2010) Bisulfite sequencing of DNA. Curr Protoc Mol Biol. Chapter 7: Unit 7.9. 1-17.
-
(2010)
Curr Protoc Mol Biol
, pp. 1-17
-
-
Darst, R.P.1
Pardo, C.E.2
Ai, L.3
Brown, K.D.4
Kladde, M.P.5
-
20
-
-
0036311221
-
Methylation sequencing from limiting DNA: Embryonic, fixed, and microdissected cells
-
DOI 10.1016/S1046-2023(02)00061-0, PII S1046202302000610
-
Millar DS, Warnecke PM, Melki JR, Clark SJ (2002) Methylation sequencing from limiting DNA: embryonic, fixed, and microdissected cells. Methods. 27: 108-113. (Pubitemid 34757120)
-
(2002)
Methods
, vol.27
, Issue.2
, pp. 108-113
-
-
Millar, D.S.1
Warnecke, P.M.2
Melki, J.R.3
Clark, S.J.4
-
21
-
-
1442323788
-
Bisulfite conversion of genomic DNA for methylation analysis: Protocol simplification with higher recovery applicable to limited samples and increased throughput
-
DOI 10.1016/j.ab.2003.11.020, PII S0003269703008315
-
Boyd VL, Zon G (2004) Bisulfite conversion of genomic DNA for methylation analysis: protocol simplification with higher recovery applicable to limited samples and increased throughput. Anal Biochem. 326: 278-280. (Pubitemid 38293391)
-
(2004)
Analytical Biochemistry
, vol.326
, Issue.2
, pp. 278-280
-
-
Boyd, V.L.1
Zon, G.2
-
22
-
-
36049007465
-
Accelerated bisulfite-deamination of cytosine in the genomic sequencing procedure for DNA methylation analysis
-
Hayatsu H, Negishi K, Shiraishi M (2004) Accelerated bisulfite- deamination of cytosine in the genomic sequencing procedure for DNA methylation analysis. Nucleic Acids Symp Ser (Oxf). 48: 261-262.
-
(2004)
Nucleic Acids Symp Ser (Oxf)
, vol.48
, pp. 261-262
-
-
Hayatsu, H.1
Negishi, K.2
Shiraishi, M.3
-
24
-
-
21044454727
-
High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation
-
DOI 10.1093/dnares/11.6.409
-
Shiraishi M, Hayatsu H (2004) High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation. DNA Res. 11: 409-415. (Pubitemid 40873615)
-
(2004)
DNA Research
, vol.11
, Issue.6
, pp. 409-415
-
-
Shiraishi, M.1
Hayatsu, H.2
-
25
-
-
84885408749
-
Improved PCR performance using template DNA from formalin-fixed and paraffin-embedded tissues by overcoming PCR inhibition
-
Dietrich D, Uhl B, Sailer V, Holmes EE, Jung M, et al. (2013) Improved PCR performance using template DNA from formalin-fixed and paraffin-embedded tissues by overcoming PCR inhibition. PLoS One. 8: e77771.
-
(2013)
PLoS One
, vol.8
-
-
Dietrich, D.1
Uhl, B.2
Sailer, V.3
Holmes, E.E.4
Jung, M.5
-
26
-
-
67650077151
-
Circulating methylated SEPT9 DNA in plasma is a biomarker for colorectal cancer
-
deVos T, Tetzner R, Model F, Weiss G, Schuster M, et al. (2009) Circulating methylated SEPT9 DNA in plasma is a biomarker for colorectal cancer. Clin Chem. 55: 1337-1346.
-
(2009)
Clin Chem
, vol.55
, pp. 1337-1346
-
-
DeVos, T.1
Tetzner, R.2
Model, F.3
Weiss, G.4
Schuster, M.5
-
27
-
-
58749087364
-
Errors in the bisulfite conversion of DNA: Modulating inappropriate- and failed-conversion frequencies
-
Genereux DP, Johnson WC, Burden AF, Stöger R, Laird CD (2008) Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies. Nucleic Acids Res. 36: e150.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Genereux, D.P.1
Johnson, W.C.2
Burden, A.F.3
Stöger, R.4
Laird, C.D.5
-
28
-
-
0036311202
-
Identification and resolution of artifacts in bisulfite sequencing
-
DOI 10.1016/S1046-2023(02)00060-9, PII S1046202302000609
-
Warnecke PM, Stirzaker C, Song J, Grunau C, Melki JR, et al. (2002) Identification and resolution of artifacts in bisulfite sequencing. Methods. 27: 101-107. (Pubitemid 34757119)
-
(2002)
Methods
, vol.27
, Issue.2
, pp. 101-107
-
-
Warnecke, P.M.1
Stirzaker, C.2
Song, J.3
Grunau, C.4
Melki, J.R.5
Clark, S.J.6
-
29
-
-
0028961759
-
A bisulfite method of 5-methylcytosine mapping that minimizes template degradation
-
Raizis AM, Schmitt F, Jost JP (1995) A bisulfite method of 5-methylcytosine mapping that minimizes template degradation. Anal Biochem. 226: 161-166.
-
(1995)
Anal Biochem
, vol.226
, pp. 161-166
-
-
Raizis, A.M.1
Schmitt, F.2
Jost, J.P.3
-
30
-
-
0035407651
-
Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
-
Grunau C, Clark SJ, Rosenthal A (2001) Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucleic Acids Res. 29: E65-65.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Grunau, C.1
Clark, S.J.2
Rosenthal, A.3
-
31
-
-
33847619360
-
Degradation of DNA by bisulfite treatment
-
DOI 10.1016/j.bmcl.2007.01.040, PII S0960894X07000911
-
Tanaka K, Okamoto A (2007) Degradation of DNA by bisulfite treatment. Bioorg Med Chem Lett. 17: 1912-1915. (Pubitemid 46367676)
-
(2007)
Bioorganic and Medicinal Chemistry Letters
, vol.17
, Issue.7
, pp. 1912-1915
-
-
Tanaka, K.1
Okamoto, A.2
-
32
-
-
47849128445
-
The bisulfite genomic sequencing used in the analysis of epigenetic states, a technique in the emerging environmental genotoxicology research
-
Hayatsu H (2008) The bisulfite genomic sequencing used in the analysis of epigenetic states, a technique in the emerging environmental genotoxicology research. Mutat Res. 659: 77-82.
-
(2008)
Mutat Res
, vol.659
, pp. 77-82
-
-
Hayatsu, H.1
-
33
-
-
84878058547
-
The conversion of protonated cytosine-SO3(-) to uracil-SO3(-): Insights into the novel induced hydrolytic deamination through bisulfite catalysis
-
Jin L, Wang W, Hu D, Lü J (2013) The conversion of protonated cytosine-SO3(-) to uracil-SO3(-): insights into the novel induced hydrolytic deamination through bisulfite catalysis. Phys Chem Chem Phys. 15: 9034-9042.
-
(2013)
Phys Chem Chem Phys
, vol.15
, pp. 9034-9042
-
-
Jin, L.1
Wang, W.2
Hu, D.3
Lü, J.4
-
34
-
-
84860140980
-
High quality DNA obtained with an automated DNA extraction method with 70+ year old formalin-fixed celloidin-embedded (FFCE) blocks from the indiana medical history museum
-
Niland EE, McGuire A, Cox MH, Sandusky GE (2012) High quality DNA obtained with an automated DNA extraction method with 70+ year old formalin-fixed celloidin-embedded (FFCE) blocks from the indiana medical history museum. Am J Transl Res. 4: 198-205.
-
(2012)
Am J Transl Res
, vol.4
, pp. 198-205
-
-
Niland, E.E.1
McGuire, A.2
Cox, M.H.3
Sandusky, G.E.4
-
35
-
-
84856108985
-
Influence of prolonged formalin fixation of tissue samples on the sensitivity of chromogenic in situ hybridization
-
Mostegl MM, Richter B, Dinhopl N, Weissenböck H (2011) Influence of prolonged formalin fixation of tissue samples on the sensitivity of chromogenic in situ hybridization. J Vet Diagn Invest. 23: 1212-1216.
-
(2011)
J Vet Diagn Invest
, vol.23
, pp. 1212-1216
-
-
Mostegl, M.M.1
Richter, B.2
Dinhopl, N.3
Weissenböck, H.4
-
36
-
-
77956910135
-
Multicentre validation study of nucleic acids extraction from FFPE tissues
-
Bonin S, Hlubek F, Benhattar J, Denkert C, Dietel M, et al. (2010) Multicentre validation study of nucleic acids extraction from FFPE tissues. Virchows Arch. 457: 309-317.
-
(2010)
Virchows Arch
, vol.457
, pp. 309-317
-
-
Bonin, S.1
Hlubek, F.2
Benhattar, J.3
Denkert, C.4
Dietel, M.5
-
37
-
-
84870451374
-
Improved PCR amplification for molecular analysis using DNA from long-term preserved formalin-fixed, paraffin-embedded lung cancer tissue specimens
-
Taga M, Eguchi H, Shinohara T, Takahashi K, Ito R, et al. (2013) Improved PCR amplification for molecular analysis using DNA from long-term preserved formalin-fixed, paraffin-embedded lung cancer tissue specimens. Int J Clin Exp Pathol. 6: 76-79.
-
(2013)
Int J Clin Exp Pathol
, vol.6
, pp. 76-79
-
-
Taga, M.1
Eguchi, H.2
Shinohara, T.3
Takahashi, K.4
Ito, R.5
-
38
-
-
61349121505
-
Cell-free tumor DNA in blood plasma as a marker for circulating tumor cells in prostate cancer
-
Schwarzenbach H, Alix-Panabières C, Müller I, Letang N, Vendrell JP, et al. (2009) Cell-free tumor DNA in blood plasma as a marker for circulating tumor cells in prostate cancer. Clin Cancer Res. 15: 1032-1038.
-
(2009)
Clin Cancer Res
, vol.15
, pp. 1032-1038
-
-
Schwarzenbach, H.1
Alix-Panabières, C.2
Müller, I.3
Letang, N.4
Vendrell, J.P.5
-
39
-
-
0242362613
-
Use of magnetic beads for plasma cell-free DNA extraction: Toward automation of plasma DNA analysis for molecular diagnostics
-
Stemmer C, Beau-Faller M, Pencreac'h E, Guerin E, Schneider A, et al. (2003) Use of magnetic beads for plasma cell-free DNA extraction: toward automation of plasma DNA analysis for molecular diagnostics. Clin Chem. 49: 1953-1935.
-
(2003)
Clin Chem
, vol.49
, pp. 1953-11935
-
-
Stemmer, C.1
Beau-Faller, M.2
Pencreac'H, E.3
Guerin, E.4
Schneider, A.5
-
40
-
-
0035103448
-
Quantitation of genomic DNA in plasma and serum samples: Higher concentrations of genomic DNA found in serum than in plasma
-
DOI 10.1046/j.1537-2995.2001.41020276.x
-
Lee TH, Montalvo L, Chrebtow V, Busch MP (2001) Quantitation of genomic DNA in plasma and serum samples: higher concentrations of genomic DNA found in serum than in plasma. Transfusion. 41: 276-282. (Pubitemid 32220522)
-
(2001)
Transfusion
, vol.41
, Issue.2
, pp. 276-282
-
-
Lee, T.-H.1
Montalvo, L.2
Chrebtow, V.3
Busch, M.P.4
|