-
1
-
-
33344473656
-
The DEAD-box protein family of RNA helicases
-
Cordin, O., Banroques, J., Tanner, N. K. & Linder, P. (2006). The DEAD-box protein family of RNA helicases. Gene 367, 17-37.
-
(2006)
Gene
, vol.367
, pp. 17-37
-
-
Cordin, O.1
Banroques, J.2
Tanner, N.K.3
Linder, P.4
-
2
-
-
0031869639
-
Plasposons: Modular self-cloning minitransposon derivatives for rapid genetic analysis of gramnegative bacterial genomes
-
Dennis, J. J. & Zylstra, G. J. (1998). Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gramnegative bacterial genomes. Appl Environ Microbiol 64, 2710-2715.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2710-2715
-
-
Dennis, J.J.1
Zylstra, G.J.2
-
3
-
-
79957992260
-
Peroxide stress elicits adaptive changes in bacterial metal ion homeostasis
-
Faulkner, M. J. & Helmann, J. D. (2011). Peroxide stress elicits adaptive changes in bacterial metal ion homeostasis. Antioxid Redox Signal 15, 175-189.
-
(2011)
Antioxid Redox Signal
, vol.15
, pp. 175-189
-
-
Faulkner, M.J.1
Helmann, J.D.2
-
4
-
-
0000527903
-
Replication of an origincontaining derivative of plasmid RK2 dependent on a plasmid function provided in trans
-
Figurski, D. H. & Helinski, D. R. (1979). Replication of an origincontaining derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A 76, 1648-1652.
-
(1979)
Proc Natl Acad Sci U S A
, vol.76
, pp. 1648-1652
-
-
Figurski, D.H.1
Helinski, D.R.2
-
5
-
-
32044474842
-
A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments
-
Groh, J. L., Luo, Q., Ballard, J. D. & Krumholz, L. R. (2005). A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments. Appl Environ Microbiol 71, 7064-7074.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7064-7074
-
-
Groh, J.L.1
Luo, Q.2
Ballard, J.D.3
Krumholz, L.R.4
-
6
-
-
33846422394
-
Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance
-
Groh, J. L., Luo, Q., Ballard, J. D. & Krumholz, L. R. (2007). Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance. Appl Environ Microbiol 73, 492-498.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 492-498
-
-
Groh, J.L.1
Luo, Q.2
Ballard, J.D.3
Krumholz, L.R.4
-
7
-
-
0032966773
-
Strategies for isolation of in vivo expressed genes from bacteria
-
Handfield, M. & Levesque, R. C. (1999). Strategies for isolation of in vivo expressed genes from bacteria. FEMS Microbiol Rev 23, 69-91.
-
(1999)
FEMS Microbiol Rev
, vol.23
, pp. 69-91
-
-
Handfield, M.1
Levesque, R.C.2
-
8
-
-
0029117137
-
Simultaneous identification of bacterial virulence genes by negative selection
-
Hensel, M., Shea, J. E., Gleeson, C., Jones, M. D., Dalton, E. & Holden, D. W. (1995). Simultaneous identification of bacterial virulence genes by negative selection. Science 269, 400-403.
-
(1995)
Science
, vol.269
, pp. 400-403
-
-
Hensel, M.1
Shea, J.E.2
Gleeson, C.3
Jones, M.D.4
Dalton, E.5
Holden, D.W.6
-
9
-
-
0032575051
-
A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: Application for isolation of unmarked Pseudomonas aeruginosa mutants
-
Hoang, T. T., Karkhoff-Schweizer, R. R., Kutchma, A. J. & Schweizer, H. P. (1998). A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212, 77-86.
-
(1998)
Gene
, vol.212
, pp. 77-86
-
-
Hoang, T.T.1
Karkhoff-Schweizer, R.R.2
Kutchma, A.J.3
Schweizer, H.P.4
-
10
-
-
3042601400
-
Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo
-
Hunt, T. A., Kooi, C., Sokol, P. A. & Valvano, M. A. (2004). Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo. Infect Immun 72, 4010-4022.
-
(2004)
Infect Immun
, vol.72
, pp. 4010-4022
-
-
Hunt, T.A.1
Kooi, C.2
Sokol, P.A.3
Valvano, M.A.4
-
11
-
-
33749125440
-
DEAD-box RNA helicases in Escherichia coli
-
Iost, I. & Dreyfus, M. (2006). DEAD-box RNA helicases in Escherichia coli. Nucleic Acids Res 34, 4189-4197.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4189-4197
-
-
Iost, I.1
Dreyfus, M.2
-
12
-
-
84860539102
-
Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation
-
Kimura, A., Yuhara, S., Ohtsubo, Y., Nagata, Y. & Tsuda, M. (2012). Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation. Microbiology 158, 1284-1293.
-
(2012)
Microbiology
, vol.158
, pp. 1284-1293
-
-
Kimura, A.1
Yuhara, S.2
Ohtsubo, Y.3
Nagata, Y.4
Tsuda, M.5
-
13
-
-
0038191057
-
Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616
-
Komatsu, H., Imura, Y., Ohori, A., Nagata, Y. & Tsuda, M. (2003). Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616. J Bacteriol 185, 3333-3343.
-
(2003)
J Bacteriol
, vol.185
, pp. 3333-3343
-
-
Komatsu, H.1
Imura, Y.2
Ohori, A.3
Nagata, Y.4
Tsuda, M.5
-
14
-
-
3042691769
-
HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli
-
Koo, J. T., Choe, J. & Moseley, S. L. (2004). HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli. Mol Microbiol 52, 1813-1826.
-
(2004)
Mol Microbiol
, vol.52
, pp. 1813-1826
-
-
Koo, J.T.1
Choe, J.2
Moseley, S.L.3
-
15
-
-
35148839870
-
Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20
-
Luo, Q., Groh, J. L., Ballard, J. D. & Krumholz, L. R. (2007). Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20. Appl Environ Microbiol 73, 6305-6312.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6305-6312
-
-
Luo, Q.1
Groh, J.L.2
Ballard, J.D.3
Krumholz, L.R.4
-
17
-
-
33845311869
-
Signature-tagged mutagenesis: Barcoding mutants for genome-wide screens
-
Mazurkiewicz, P., Tang, C. M., Boone, C. & Holden, D. W. (2006). Signature-tagged mutagenesis: barcoding mutants for genome-wide screens. Nat Rev Genet 7, 929-939.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 929-939
-
-
Mazurkiewicz, P.1
Tang, C.M.2
Boone, C.3
Holden, D.W.4
-
18
-
-
27644463879
-
Organization and localization of the dnaA and dnaK gene regions on the multichromosomal genome of Burkholderia multivorans ATCC 17616
-
Nagata, Y., Matsuda, M., Komatsu, H., Imura, Y., Sawada, H., Ohtsubo, Y. & Tsuda, M. (2005). Organization and localization of the dnaA and dnaK gene regions on the multichromosomal genome of Burkholderia multivorans ATCC 17616. J Biosci Bioeng 99, 603-610.
-
(2005)
J Biosci Bioeng
, vol.99
, pp. 603-610
-
-
Nagata, Y.1
Matsuda, M.2
Komatsu, H.3
Imura, Y.4
Sawada, H.5
Ohtsubo, Y.6
Tsuda, M.7
-
19
-
-
77956258697
-
Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology
-
Nishiyama, E., Ohtsubo, Y., Nagata, Y. & Tsuda, M. (2010). Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology. Environ Microbiol 12, 2539-2558.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2539-2558
-
-
Nishiyama, E.1
Ohtsubo, Y.2
Nagata, Y.3
Tsuda, M.4
-
20
-
-
84859421689
-
Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil
-
Nishiyama, E., Ohtsubo, Y., Yamamoto, Y., Nagata, Y. & Tsuda, M. (2012). Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil. FEMS Microbiol Lett 330, 46-55.
-
(2012)
FEMS Microbiol Lett
, vol.330
, pp. 46-55
-
-
Nishiyama, E.1
Ohtsubo, Y.2
Yamamoto, Y.3
Nagata, Y.4
Tsuda, M.5
-
21
-
-
33947177575
-
Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis
-
O'Sullivan, L. A., Weightman, A. J., Jones, T. H., Marchbank, A. M., Tiedje, J. M. & Mahenthiralingam, E. (2007). Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. Environ Microbiol 9, 1017-1034.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1017-1034
-
-
O'Sullivan, L.A.1
Weightman, A.J.2
Jones, T.H.3
Marchbank, A.M.4
Tiedje, J.M.5
Mahenthiralingam, E.6
-
22
-
-
33744471909
-
Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102
-
Ohtsubo, Y., Goto, H., Nagata, Y., Kudo, T. & Tsuda, M. (2006). Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol 60, 1563-1575.
-
(2006)
Mol Microbiol
, vol.60
, pp. 1563-1575
-
-
Ohtsubo, Y.1
Goto, H.2
Nagata, Y.3
Kudo, T.4
Tsuda, M.5
-
23
-
-
52649124812
-
GenomeMatcher: A graphical user interface for DNA sequence comparison
-
Ohtsubo, Y., Ikeda-Ohtsubo, W., Nagata, Y. & Tsuda, M. (2008). GenomeMatcher: a graphical user interface for DNA sequence comparison. BMC Bioinformatics 9, 376.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 376
-
-
Ohtsubo, Y.1
Ikeda-Ohtsubo, W.2
Nagata, Y.3
Tsuda, M.4
-
24
-
-
84866309711
-
Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element
-
Ohtsubo, Y., Ishibashi, Y., Naganawa, H., Hirokawa, S., Atobe, S., Nagata, Y. & Tsuda, M. (2012). Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element. J Bacteriol 194, 4237-4248.
-
(2012)
J Bacteriol
, vol.194
, pp. 4237-4248
-
-
Ohtsubo, Y.1
Ishibashi, Y.2
Naganawa, H.3
Hirokawa, S.4
Atobe, S.5
Nagata, Y.6
Tsuda, M.7
-
25
-
-
81155150237
-
Laboratory research aimed at closing the gaps in microbial bioremediation
-
Ramos, J. L., Marqués, S., van Dillewijn, P., Espinosa-Urgel, M., Segura, A., Duque, E., Krell, T., Ramos-González, M. I., Bursakov, S. & other authors (2011). Laboratory research aimed at closing the gaps in microbial bioremediation. Trends Biotechnol 29, 641-647.
-
(2011)
Trends Biotechnol
, vol.29
, pp. 641-647
-
-
Ramos, J.L.1
Marqués, S.2
van Dillewijn, P.3
Espinosa-Urgel, M.4
Segura, A.5
Duque, E.6
Krell, T.7
Ramos-González, M.I.8
Bursakov, S.9
-
26
-
-
84862999441
-
DEAD-box RNA helicases in grampositive RNA decay
-
Redder, P. & Linder, P. (2012). DEAD-box RNA helicases in grampositive RNA decay. Methods Enzymol 511, 369-383.
-
(2012)
Methods Enzymol
, vol.511
, pp. 369-383
-
-
Redder, P.1
Linder, P.2
-
27
-
-
20544453320
-
Unraveling the secret lives of bacteria: Use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression
-
Rediers, H., Rainey, P. B., Vanderleyden, J. & De Mot, R. (2005). Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression. Microbiol Mol Biol Rev 69, 217-261.
-
(2005)
Microbiol Mol Biol Rev
, vol.69
, pp. 217-261
-
-
Rediers, H.1
Rainey, P.B.2
Vanderleyden, J.3
De Mot, R.4
-
28
-
-
79960781754
-
HrpA, a DEAH-box RNA helicase, is involved in global gene regulation in the Lyme disease spirochete
-
Salman-Dilgimen, A., Hardy, P. O., Dresser, A. R. & Chaconas, G. (2011). HrpA, a DEAH-box RNA helicase, is involved in global gene regulation in the Lyme disease spirochete. PLoS ONE 6, e22168.
-
(2011)
PLoS ONE
, vol.6
-
-
Salman-Dilgimen, A.1
Hardy, P.O.2
Dresser, A.R.3
Chaconas, G.4
-
29
-
-
0003903343
-
-
2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
-
Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
30
-
-
0026571761
-
Allelic exchange in Pseudomonas aeruginosa using novel ColE1-type vectors and a family of cassettes containing a portable oriT and the counter-selectable Bacillus subtilis sacB marker
-
Schweizer, H. P. (1992). Allelic exchange in Pseudomonas aeruginosa using novel ColE1-type vectors and a family of cassettes containing a portable oriT and the counter-selectable Bacillus subtilis sacB marker. Mol Microbiol 6, 1195-1204.
-
(1992)
Mol Microbiol
, vol.6
, pp. 1195-1204
-
-
Schweizer, H.P.1
-
31
-
-
0013904956
-
The aerobic pseudomonads: A taxonomic study
-
Stanier, R. Y., Palleroni, N. J. & Doudoroff, M. (1966). The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271.
-
(1966)
J Gen Microbiol
, vol.43
, pp. 159-271
-
-
Stanier, R.Y.1
Palleroni, N.J.2
Doudoroff, M.3
-
32
-
-
84864016302
-
Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli
-
Tamura, M., Kers, J. A. & Cohen, S. N. (2012). Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli. J Bacteriol 194, 1919-1926.
-
(2012)
J Bacteriol
, vol.194
, pp. 1919-1926
-
-
Tamura, M.1
Kers, J.A.2
Cohen, S.N.3
-
33
-
-
79952186054
-
Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes
-
Tyagi, M., da Fonseca, M. M. R. & de Carvalho, C. C. C. R. (2011). Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes. Biodegradation 22, 231-241.
-
(2011)
Biodegradation
, vol.22
, pp. 231-241
-
-
Tyagi, M.1
da Fonseca, M.M.R.2
de Carvalho, C.C.C.R.3
-
34
-
-
0030740090
-
Fate and activity of microorganisms introduced into soil
-
van Veen, J. A., van Overbeek, L. S. & van Elsas, J. D. (1997). Fate and activity of microorganisms introduced into soil. Microbiol Mol Biol Rev 61, 121-135.
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, pp. 121-135
-
-
van Veen, J.A.1
van Overbeek, L.S.2
van Elsas, J.D.3
-
35
-
-
41549145885
-
Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil
-
Wang, Y., Shimodaira, J., Miyasaka, T., Morimoto, S., Oomori, T., Ogawa, N., Fukuda, M. & Fujii, T. (2008). Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil. Biosci Biotechnol Biochem 72, 694-701.
-
(2008)
Biosci Biotechnol Biochem
, vol.72
, pp. 694-701
-
-
Wang, Y.1
Shimodaira, J.2
Miyasaka, T.3
Morimoto, S.4
Oomori, T.5
Ogawa, N.6
Fukuda, M.7
Fujii, T.8
-
36
-
-
48449095402
-
Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans
-
Yuhara, S., Komatsu, H., Goto, H., Ohtsubo, Y., Nagata, Y. & Tsuda, M. (2008). Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans. Microbiology 154, 1763-1774.
-
(2008)
Microbiology
, vol.154
, pp. 1763-1774
-
-
Yuhara, S.1
Komatsu, H.2
Goto, H.3
Ohtsubo, Y.4
Nagata, Y.5
Tsuda, M.6
|