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Volumn 160, Issue PART 5, 2014, Pages 883-891

Identification of Burkholderia multivorans ATCC 17616 genetic determinants for fitness in soil by using signature-tagged mutagenesis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM MUTANT; BURKHOLDERIA MULTIVORANS; DNA EXTRACTION; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; SOIL MICROFLORA; WILD TYPE;

EID: 84899136792     PISSN: 13500872     EISSN: 14652080     Source Type: Journal    
DOI: 10.1099/mic.0.077057-0     Document Type: Article
Times cited : (13)

References (36)
  • 1
    • 33344473656 scopus 로고    scopus 로고
    • The DEAD-box protein family of RNA helicases
    • Cordin, O., Banroques, J., Tanner, N. K. & Linder, P. (2006). The DEAD-box protein family of RNA helicases. Gene 367, 17-37.
    • (2006) Gene , vol.367 , pp. 17-37
    • Cordin, O.1    Banroques, J.2    Tanner, N.K.3    Linder, P.4
  • 2
    • 0031869639 scopus 로고    scopus 로고
    • Plasposons: Modular self-cloning minitransposon derivatives for rapid genetic analysis of gramnegative bacterial genomes
    • Dennis, J. J. & Zylstra, G. J. (1998). Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gramnegative bacterial genomes. Appl Environ Microbiol 64, 2710-2715.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2710-2715
    • Dennis, J.J.1    Zylstra, G.J.2
  • 3
    • 79957992260 scopus 로고    scopus 로고
    • Peroxide stress elicits adaptive changes in bacterial metal ion homeostasis
    • Faulkner, M. J. & Helmann, J. D. (2011). Peroxide stress elicits adaptive changes in bacterial metal ion homeostasis. Antioxid Redox Signal 15, 175-189.
    • (2011) Antioxid Redox Signal , vol.15 , pp. 175-189
    • Faulkner, M.J.1    Helmann, J.D.2
  • 4
    • 0000527903 scopus 로고
    • Replication of an origincontaining derivative of plasmid RK2 dependent on a plasmid function provided in trans
    • Figurski, D. H. & Helinski, D. R. (1979). Replication of an origincontaining derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A 76, 1648-1652.
    • (1979) Proc Natl Acad Sci U S A , vol.76 , pp. 1648-1652
    • Figurski, D.H.1    Helinski, D.R.2
  • 5
    • 32044474842 scopus 로고    scopus 로고
    • A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments
    • Groh, J. L., Luo, Q., Ballard, J. D. & Krumholz, L. R. (2005). A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments. Appl Environ Microbiol 71, 7064-7074.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7064-7074
    • Groh, J.L.1    Luo, Q.2    Ballard, J.D.3    Krumholz, L.R.4
  • 6
    • 33846422394 scopus 로고    scopus 로고
    • Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance
    • Groh, J. L., Luo, Q., Ballard, J. D. & Krumholz, L. R. (2007). Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance. Appl Environ Microbiol 73, 492-498.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 492-498
    • Groh, J.L.1    Luo, Q.2    Ballard, J.D.3    Krumholz, L.R.4
  • 7
    • 0032966773 scopus 로고    scopus 로고
    • Strategies for isolation of in vivo expressed genes from bacteria
    • Handfield, M. & Levesque, R. C. (1999). Strategies for isolation of in vivo expressed genes from bacteria. FEMS Microbiol Rev 23, 69-91.
    • (1999) FEMS Microbiol Rev , vol.23 , pp. 69-91
    • Handfield, M.1    Levesque, R.C.2
  • 8
    • 0029117137 scopus 로고
    • Simultaneous identification of bacterial virulence genes by negative selection
    • Hensel, M., Shea, J. E., Gleeson, C., Jones, M. D., Dalton, E. & Holden, D. W. (1995). Simultaneous identification of bacterial virulence genes by negative selection. Science 269, 400-403.
    • (1995) Science , vol.269 , pp. 400-403
    • Hensel, M.1    Shea, J.E.2    Gleeson, C.3    Jones, M.D.4    Dalton, E.5    Holden, D.W.6
  • 9
    • 0032575051 scopus 로고    scopus 로고
    • A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: Application for isolation of unmarked Pseudomonas aeruginosa mutants
    • Hoang, T. T., Karkhoff-Schweizer, R. R., Kutchma, A. J. & Schweizer, H. P. (1998). A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212, 77-86.
    • (1998) Gene , vol.212 , pp. 77-86
    • Hoang, T.T.1    Karkhoff-Schweizer, R.R.2    Kutchma, A.J.3    Schweizer, H.P.4
  • 10
    • 3042601400 scopus 로고    scopus 로고
    • Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo
    • Hunt, T. A., Kooi, C., Sokol, P. A. & Valvano, M. A. (2004). Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo. Infect Immun 72, 4010-4022.
    • (2004) Infect Immun , vol.72 , pp. 4010-4022
    • Hunt, T.A.1    Kooi, C.2    Sokol, P.A.3    Valvano, M.A.4
  • 11
    • 33749125440 scopus 로고    scopus 로고
    • DEAD-box RNA helicases in Escherichia coli
    • Iost, I. & Dreyfus, M. (2006). DEAD-box RNA helicases in Escherichia coli. Nucleic Acids Res 34, 4189-4197.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4189-4197
    • Iost, I.1    Dreyfus, M.2
  • 12
    • 84860539102 scopus 로고    scopus 로고
    • Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation
    • Kimura, A., Yuhara, S., Ohtsubo, Y., Nagata, Y. & Tsuda, M. (2012). Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation. Microbiology 158, 1284-1293.
    • (2012) Microbiology , vol.158 , pp. 1284-1293
    • Kimura, A.1    Yuhara, S.2    Ohtsubo, Y.3    Nagata, Y.4    Tsuda, M.5
  • 13
    • 0038191057 scopus 로고    scopus 로고
    • Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616
    • Komatsu, H., Imura, Y., Ohori, A., Nagata, Y. & Tsuda, M. (2003). Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616. J Bacteriol 185, 3333-3343.
    • (2003) J Bacteriol , vol.185 , pp. 3333-3343
    • Komatsu, H.1    Imura, Y.2    Ohori, A.3    Nagata, Y.4    Tsuda, M.5
  • 14
    • 3042691769 scopus 로고    scopus 로고
    • HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli
    • Koo, J. T., Choe, J. & Moseley, S. L. (2004). HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli. Mol Microbiol 52, 1813-1826.
    • (2004) Mol Microbiol , vol.52 , pp. 1813-1826
    • Koo, J.T.1    Choe, J.2    Moseley, S.L.3
  • 15
    • 35148839870 scopus 로고    scopus 로고
    • Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20
    • Luo, Q., Groh, J. L., Ballard, J. D. & Krumholz, L. R. (2007). Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20. Appl Environ Microbiol 73, 6305-6312.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6305-6312
    • Luo, Q.1    Groh, J.L.2    Ballard, J.D.3    Krumholz, L.R.4
  • 17
    • 33845311869 scopus 로고    scopus 로고
    • Signature-tagged mutagenesis: Barcoding mutants for genome-wide screens
    • Mazurkiewicz, P., Tang, C. M., Boone, C. & Holden, D. W. (2006). Signature-tagged mutagenesis: barcoding mutants for genome-wide screens. Nat Rev Genet 7, 929-939.
    • (2006) Nat Rev Genet , vol.7 , pp. 929-939
    • Mazurkiewicz, P.1    Tang, C.M.2    Boone, C.3    Holden, D.W.4
  • 18
    • 27644463879 scopus 로고    scopus 로고
    • Organization and localization of the dnaA and dnaK gene regions on the multichromosomal genome of Burkholderia multivorans ATCC 17616
    • Nagata, Y., Matsuda, M., Komatsu, H., Imura, Y., Sawada, H., Ohtsubo, Y. & Tsuda, M. (2005). Organization and localization of the dnaA and dnaK gene regions on the multichromosomal genome of Burkholderia multivorans ATCC 17616. J Biosci Bioeng 99, 603-610.
    • (2005) J Biosci Bioeng , vol.99 , pp. 603-610
    • Nagata, Y.1    Matsuda, M.2    Komatsu, H.3    Imura, Y.4    Sawada, H.5    Ohtsubo, Y.6    Tsuda, M.7
  • 19
    • 77956258697 scopus 로고    scopus 로고
    • Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology
    • Nishiyama, E., Ohtsubo, Y., Nagata, Y. & Tsuda, M. (2010). Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology. Environ Microbiol 12, 2539-2558.
    • (2010) Environ Microbiol , vol.12 , pp. 2539-2558
    • Nishiyama, E.1    Ohtsubo, Y.2    Nagata, Y.3    Tsuda, M.4
  • 20
    • 84859421689 scopus 로고    scopus 로고
    • Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil
    • Nishiyama, E., Ohtsubo, Y., Yamamoto, Y., Nagata, Y. & Tsuda, M. (2012). Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil. FEMS Microbiol Lett 330, 46-55.
    • (2012) FEMS Microbiol Lett , vol.330 , pp. 46-55
    • Nishiyama, E.1    Ohtsubo, Y.2    Yamamoto, Y.3    Nagata, Y.4    Tsuda, M.5
  • 21
    • 33947177575 scopus 로고    scopus 로고
    • Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis
    • O'Sullivan, L. A., Weightman, A. J., Jones, T. H., Marchbank, A. M., Tiedje, J. M. & Mahenthiralingam, E. (2007). Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. Environ Microbiol 9, 1017-1034.
    • (2007) Environ Microbiol , vol.9 , pp. 1017-1034
    • O'Sullivan, L.A.1    Weightman, A.J.2    Jones, T.H.3    Marchbank, A.M.4    Tiedje, J.M.5    Mahenthiralingam, E.6
  • 22
    • 33744471909 scopus 로고    scopus 로고
    • Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102
    • Ohtsubo, Y., Goto, H., Nagata, Y., Kudo, T. & Tsuda, M. (2006). Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol 60, 1563-1575.
    • (2006) Mol Microbiol , vol.60 , pp. 1563-1575
    • Ohtsubo, Y.1    Goto, H.2    Nagata, Y.3    Kudo, T.4    Tsuda, M.5
  • 23
    • 52649124812 scopus 로고    scopus 로고
    • GenomeMatcher: A graphical user interface for DNA sequence comparison
    • Ohtsubo, Y., Ikeda-Ohtsubo, W., Nagata, Y. & Tsuda, M. (2008). GenomeMatcher: a graphical user interface for DNA sequence comparison. BMC Bioinformatics 9, 376.
    • (2008) BMC Bioinformatics , vol.9 , pp. 376
    • Ohtsubo, Y.1    Ikeda-Ohtsubo, W.2    Nagata, Y.3    Tsuda, M.4
  • 24
    • 84866309711 scopus 로고    scopus 로고
    • Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element
    • Ohtsubo, Y., Ishibashi, Y., Naganawa, H., Hirokawa, S., Atobe, S., Nagata, Y. & Tsuda, M. (2012). Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element. J Bacteriol 194, 4237-4248.
    • (2012) J Bacteriol , vol.194 , pp. 4237-4248
    • Ohtsubo, Y.1    Ishibashi, Y.2    Naganawa, H.3    Hirokawa, S.4    Atobe, S.5    Nagata, Y.6    Tsuda, M.7
  • 26
    • 84862999441 scopus 로고    scopus 로고
    • DEAD-box RNA helicases in grampositive RNA decay
    • Redder, P. & Linder, P. (2012). DEAD-box RNA helicases in grampositive RNA decay. Methods Enzymol 511, 369-383.
    • (2012) Methods Enzymol , vol.511 , pp. 369-383
    • Redder, P.1    Linder, P.2
  • 27
    • 20544453320 scopus 로고    scopus 로고
    • Unraveling the secret lives of bacteria: Use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression
    • Rediers, H., Rainey, P. B., Vanderleyden, J. & De Mot, R. (2005). Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression. Microbiol Mol Biol Rev 69, 217-261.
    • (2005) Microbiol Mol Biol Rev , vol.69 , pp. 217-261
    • Rediers, H.1    Rainey, P.B.2    Vanderleyden, J.3    De Mot, R.4
  • 28
    • 79960781754 scopus 로고    scopus 로고
    • HrpA, a DEAH-box RNA helicase, is involved in global gene regulation in the Lyme disease spirochete
    • Salman-Dilgimen, A., Hardy, P. O., Dresser, A. R. & Chaconas, G. (2011). HrpA, a DEAH-box RNA helicase, is involved in global gene regulation in the Lyme disease spirochete. PLoS ONE 6, e22168.
    • (2011) PLoS ONE , vol.6
    • Salman-Dilgimen, A.1    Hardy, P.O.2    Dresser, A.R.3    Chaconas, G.4
  • 30
    • 0026571761 scopus 로고
    • Allelic exchange in Pseudomonas aeruginosa using novel ColE1-type vectors and a family of cassettes containing a portable oriT and the counter-selectable Bacillus subtilis sacB marker
    • Schweizer, H. P. (1992). Allelic exchange in Pseudomonas aeruginosa using novel ColE1-type vectors and a family of cassettes containing a portable oriT and the counter-selectable Bacillus subtilis sacB marker. Mol Microbiol 6, 1195-1204.
    • (1992) Mol Microbiol , vol.6 , pp. 1195-1204
    • Schweizer, H.P.1
  • 32
    • 84864016302 scopus 로고    scopus 로고
    • Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli
    • Tamura, M., Kers, J. A. & Cohen, S. N. (2012). Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli. J Bacteriol 194, 1919-1926.
    • (2012) J Bacteriol , vol.194 , pp. 1919-1926
    • Tamura, M.1    Kers, J.A.2    Cohen, S.N.3
  • 33
    • 79952186054 scopus 로고    scopus 로고
    • Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes
    • Tyagi, M., da Fonseca, M. M. R. & de Carvalho, C. C. C. R. (2011). Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes. Biodegradation 22, 231-241.
    • (2011) Biodegradation , vol.22 , pp. 231-241
    • Tyagi, M.1    da Fonseca, M.M.R.2    de Carvalho, C.C.C.R.3
  • 35
    • 41549145885 scopus 로고    scopus 로고
    • Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil
    • Wang, Y., Shimodaira, J., Miyasaka, T., Morimoto, S., Oomori, T., Ogawa, N., Fukuda, M. & Fujii, T. (2008). Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil. Biosci Biotechnol Biochem 72, 694-701.
    • (2008) Biosci Biotechnol Biochem , vol.72 , pp. 694-701
    • Wang, Y.1    Shimodaira, J.2    Miyasaka, T.3    Morimoto, S.4    Oomori, T.5    Ogawa, N.6    Fukuda, M.7    Fujii, T.8
  • 36
    • 48449095402 scopus 로고    scopus 로고
    • Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans
    • Yuhara, S., Komatsu, H., Goto, H., Ohtsubo, Y., Nagata, Y. & Tsuda, M. (2008). Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans. Microbiology 154, 1763-1774.
    • (2008) Microbiology , vol.154 , pp. 1763-1774
    • Yuhara, S.1    Komatsu, H.2    Goto, H.3    Ohtsubo, Y.4    Nagata, Y.5    Tsuda, M.6


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