Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil

FEMS Microbiology Letters

Volumn 330, Issue 1, 2012, Pages 46-55

  Nishiyama, Eri ^a   Ohtsubo, Yoshiyuki ^a   Yamamoto, Yasuhiro ^a   Nagata, Yuji ^a   Tsuda, Masataka ^a  

^a TOHOKU UNIVERSITY   (Japan)

Author keywords

andA; Ferric uptake regulator; IVET; Transcriptional regulation; Tryptophan dioxygenase

Indexed keywords

ANTHRANILATE DIOXYGENASE; DIOXYGENASE; FERRIC UPTAKE REGULATOR; UNCLASSIFIED DRUG;

ANDA GENE; ANDR GENE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM MUTANT; BURKHOLDERIA; BURKHOLDERIA MULTIVORANS; CELL PROLIFERATION; CONTROLLED STUDY; EVOLUTIONARY ADAPTATION; GENE ACTIVITY; GENE CLUSTER; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE LOCUS; LETTER; NONHUMAN; OPERON; PRIORITY JOURNAL; PROMOTER REGION;

ADAPTATION, PHYSIOLOGICAL; ANTHRANILIC ACIDS; BACTERIAL PROTEINS; BURKHOLDERIA; GENE EXPRESSION PROFILING; MIXED FUNCTION OXYGENASES; PROMOTER REGIONS, GENETIC; REPRESSOR PROTEINS; SOIL MICROBIOLOGY; STRESS, PHYSIOLOGICAL; TRYPTOPHAN;

BURKHOLDERIA MULTIVORANS;

EID: 84859421689     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2012.02532.x     Document Type: Letter

References (32)

1. Barr M, East AK, Leonard M, Mauchline TH & Poole PS (2008) In vivo expression technology (IVET) selection of genes of Rhizobium leguminosarum biovar viciae A34 expressed in the rhizosphere. FEMS Microbiol Lett 282: 219-227.
2. Batie CJ, Ballou DP & C. CC (1991) Phthalate dioxygenase reductase and related flavin-iron-sulfer containing electron transferases. Chemistry and Biochemistry of Flavoenzymes, Vol. 3 (Muller, F., ed.), pp. 543-556. CRC Press, Boca Raton, FL.
3. Bredenbruch F, Nimtz M, Wray V, Morr M, Muller R & Haussler S (2005) Biosynthetic pathway of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines. J Bacteriol 187: 3630-3635.
4. Brown DG & Allen C (2004) Ralstonia solanacearum genes induced during growth in tomato: an inside view of bacterial wilt. Mol Microbiol 53: 1641-1660.
5. Chang HK, Mohseni P & Zylstra GJ (2003) Characterization and regulation of the genes for a novel anthranilate 1, 2-dioxygenase from Burkholderia cepacia DBO1. J Bacteriol 185: 5871-5881.
6. Cornelis P, Matthijs S & Van Oeffelen L (2009) Iron uptake regulation in Pseudomonas aeruginosa. Biometals 22: 15-22.
7. Farrow JM 3rd & Pesci EC (2007) Two distinct pathways supply anthranilate as a precursor of the Pseudomonas quinolone signal. J Bacteriol 189: 3425-3433.
8. Faulkner MJ & Helmann JD (2011) Peroxide stress elicits adaptive changes in bacterial metal ion homeostasis. Antioxid Redox Signal 15: 175-189.
9. Figurski DH & Helinski DR (1979) Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. P Natl Acad Sci USA 76: 1648-1652.
10. Handfield M & Levesque RC (1999) Strategies for isolation of in vivo expressed genes from bacteria. FEMS Microbiol Rev 23: 69-91.
11. Heeb S, Itoh Y, Nishijyo T et al. (2000) Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria. Mol Plant Microbe Interact 13: 232-237.
12. Hoang TT, Karkhoff-Schweizer RR, Kutchma AJ & Schweizer HP (1998) A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212: 77-86.
13. Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM, 2nd & Peterson KM (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166: 175-176.
14. Lombardo MJ, Michalski J, Martinez-Wilson H et al. (2007) An in vivo expression technology screen for Vibrio cholerae genes expressed in human volunteers. P Natl Acad Sci USA 104: 18229-18234.
15. Maniatis T, Fritsch EF & Sambrook J (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
16. Mijangos F, Varona F & Villota N (2006) Changes in solution color during phenol oxidation by Fenton reagent. Environ Sci Technol 40: 5538-5543.
17. Nishiyama E, Ohtsubo Y, Nagata Y & Tsuda M (2010) Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology. Environ Microbiol 12: 2539-2558.
18. Oglesby AG, Farrow JM 3rd, Lee JH, Tomaras AP, Greenberg EP, Pesci EC & Vasil ML (2008) The influence of iron on Pseudomonas aeruginosa physiology: a regulatory link between iron and quorum sensing. J Biol Chem 283: 15558-15567.
19. Ohtsubo Y, Goto H, Nagata Y, Kudo T & Tsuda M (2006) Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol 60: 1563-1575.
20. Rainey PB (1999) Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environ Microbiol 1: 243-257.
21. Rainey PB & Preston GM (2000) In vivo expression technology strategies: valuable tools for biotechnology. Curr Opin Biotechnol 11: 440-444.
22. Rediers H, Bonnecarrere V, Rainey PB, Hamonts K, Vanderleyden J & De Mot R (2003) Development and application of a dapB-based in vivo expression technology system to study colonization of rice by the endophytic nitrogen-fixing bacterium Pseudomonas stutzeri A15. Appl Environ Microbiol 69: 6864-6874.
23. Rediers H, Rainey PB, Vanderleyden J & De Mot R (2005) Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression. Microbiol Mol Biol Rev 69: 217-261.
24. Sambrook J, Fritsch EF & Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
25. Shalom G, Shaw JG & Thomas MS (2007) In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages. Microbiology 153: 2689-2699.
26. Silby MW & Levy SB (2004) Use of in vivo expression technology to identify genes important in growth and survival of Pseudomonas fluorescens Pf0-1 in soil: discovery of expressed sequences with novel genetic organization. J Bacteriol 186: 7411-7419.
27. Simon R, Priefer U & Puhler A (1983) A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria. Nat Biotechnol 1: 784-791.
28. Stanier RY, Palleroni NJ & Doudoroff M (1966) The aerobic pseudomonads: a taxanomic study. J Gen Microbiol 43: 159.
29. Stover CK, Pham XQ, Erwin AL et al. (2000) Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406: 959-964.
30. Taylor LA & Rose RE (1988) A correction in the nucleotide sequence of the Tn903 kanamycin resistance determinant in pUC4K. Nucleic Acids Res 16: 358.
31. Wang Y, Shimodaira J, Miyasaka T et al. (2008) Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil. Biosci Biotechnol Biochem 72: 694-701.
32. Yuhara S, Komatsu H, Goto H, Ohtsubo Y, Nagata Y & Tsuda M (2008) Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans. Microbiology 154: 1763-1774.