DEAD-box RNA helicases in gram-positive RNA decay

Methods in Enzymology

Volumn 511, Issue , 2012, Pages 369-383

  Redder, Peter ^a   Linder, Patrick ^a  

^a UNIVERSITY OF GENEVA   (Switzerland)

Author keywords

Biofilm; Degradosome; Hemolysis; Quorum sensin; RNA decay; RNA helicase; Staphylococcus

Indexed keywords

DEAD BOX PROTEIN; HEMOLYSIN; MESSENGER RNA; RNA HELICASE;

ARTICLE; BIOFILM; HEMOLYSIS; NONHUMAN; NORTHERN BLOTTING; PHENOTYPE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; QUORUM SENSING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA DECAY; RNA PROCESSING; STAPHYLOCOCCUS AUREUS;

BACTERIA (MICROORGANISMS); EUKARYOTA; POSIBACTERIA; STAPHYLOCOCCUS; STAPHYLOCOCCUS AUREUS;

EID: 84862999441     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-396546-2.00017-6     Document Type: Chapter

References (24)

1. A.W. Bernheimer Assay of hemolytic toxins Methods Enzymol. 165 1988 213 217
2. S. Boisset, T. Geissmann, E. Huntzinger, P. Fechter, N. Bendridi, M. Possedko, C. Chevalier, A.C. Helfer, Y. Benito, A. Jacquier, C. Gaspin, and F. Vandenesch Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism Genes Dev. 21 2007 1353 1366
3. V. Briolat, and G. Reysset Identification of the Clostridium perfringens genes involved in the adaptive response to oxidative stress J. Bacteriol. 184 2002 2333 2343
4. S.A. Bustin, V. Benes, J.A. Garson, J. Hellemans, J. Huggett, M. Kubista, R. Mueller, T. Nolan, M.W. Pfaffl, G.L. Shipley, J. Vandesompele, and C.T. Wittwer The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments Clin. Chem. 55 2009 611 622
5. A.J. Carpousis The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E Annu. Rev. Microbiol. 61 2007 71 87
6. J.Y.-F. Chen, L. Stands, J.P. Staley, R.R. Jackups Jr., L.J. Latus, and T.-H. Chang Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor Mol. Cell 7 2001 227 232
7. B.B. Christensen, C. Sternberg, J.B. Andersen, R.J. Palmer Jr., A.T. Nielsen, M. Givskov, and S. Molin Molecular tools for study of biofilm physiology Methods Enzymol. 310 1999 20 42
8. C.M. Diges, and O.C. Uhlenbeck Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA EMBO J. 20 2001 5503 5512
9. P.M. Dunman, E. Murphy, S. Haney, D. Palacios, G. Tucker-Kellogg, S. Wu, E.L. Brown, R.J. Zagursky, D. Shlaes, and S.J. Projan Transcription profiling-based identification of Staphylococcus aureus genes regulated by the agr and/or sarA loci J. Bacteriol. 183 2001 7341 7353
10. H. Eleaume, and S. Jabbouri Comparison of two standardisation methods in real-time quantitative RT-PCR to follow Staphylococcus aureus genes expression during in vitro growth J. Microbiol. Methods 59 2004 363 370
11. L.M. Elles, and O.C. Uhlenbeck Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype Nucleic Acids Res. 36 2008 41 50
12. F.V. Fuller-Pace, S.M. Nicol, A.D. Reid, and D.P. Lane DbpA: A DEAD box protein specifically activated by 23S rRNA EMBO J. 12 1993 3619 3626
13. S. Garvis, J.M. Mei, J. Ruiz-Albert, and D.W. Holden Staphylococcus aureus svrA: A gene required for virulence and expression of the agr locus Microbiology 148 2002 3235 3243
14. J. Gury, L. Barthelmebs, and J.F. Cavin Random transposon mutagenesis of Lactobacillus plantarum by using the pGh9:IS S1 vector to clone genes involved in the regulation of phenolic acid metabolism Arch. Microbiol. 182 2004 337 345
15. I. Iost, and M. Dreyfus DEAD-box RNA helicases in Escherichia coli Nucleic Acids Res. 34 2006 4189 4197
16. K.L. Jagessar, and C. Jain Functional and molecular analysis of Escherichia coli strains lacking multiple DEAD-box helicases RNA 16 2010 1386 1392
17. C. Jain The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly RNA 14 2008 381 389
18. E. Jankowsky RNA helicases at work: Binding and rearranging Trends Biochem. Sci. 36 2011 19 29
19. V. Khemici, I. Toesca, L. Poljak, N.F. Vanzo, and A.J. Carpousis The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: Functional replacement of RhlB by RhlE Mol. Microbiol. 54 2004 1422 1430
20. A.L. Kistler, and C. Guthrie Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for Sub2, an essential spliceosomal ATPase Genes Dev. 15 2001 42 49
21. K.F. Kong, C. Vuong, and M. Otto Staphylococcus quorum sensing in biofilm formation and infection Int. J. Med. Microbiol. 296 2006 133 139
22. M. Lehnik-Habrink, H. Pfortner, L. Rempeters, N. Pietack, C. Herzberg, and J. Stulke The RNA degradosome in Bacillus subtilis: Identification of CshA as the major RNA helicase in the multiprotein complex Mol. Microbiol. 77 2010 958 971
23. P. Linder, and E. Jankowsky From unwinding to clamping - The DEAD box RNA helicase family Nat. Rev. Mol. Cell Biol. 12 2011 505 516
24. P. Linder, P.F. Lasko, M. Ashburn