De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Salgado, Leonardo R ^a   Koop, Daniela M ^b   Pinheiro, Daniel G ^a   Rivallan, Ronan ^c   Le Guen, Vincent ^c   Nicolás, Marisa F ^d   de Almeida, Luiz Gonzaga P ^d   Rocha, Viviani R ^d   Magalhães, Milena ^d   Gerber, Alexandra L ^d   Figueira, Antonio ^a   Cascardo, Júlio Cézar de M ^b   de Vasconcelos, AnaTereza R ^d   Silva Jr , Wilson A ^a   Coutinho, Luiz L ^a   Garcia, Dominique ^c  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b DEPARTAMENTO DE CIÊNCIAS BIOLÓGICAS   (Brazil)

^c UMR AGAP   (France)

^d LABORATÓRIO NACIONAL DE COMPUTAÇÃO CIENTÍFICA   (Brazil)

Author keywords

KASP genotyping chemistry; Molecular markers; Next generation sequencing; Rubber tree

Indexed keywords

COMPLEMENTARY DNA; MOLECULAR MARKER; PLANT RNA; TRANSCRIPTOME; GENETIC MARKER; MICROSATELLITE DNA;

ALLELE; ARTICLE; COMPUTER MODEL; DNA SYNTHESIS; GENE AMPLIFICATION; GENE IDENTIFICATION; GENETIC SCREENING; GENETIC VARIABILITY; GENOTYPE; HEVEA BRASILIENSIS; NONHUMAN; PLANT TISSUE; RNA ISOLATION; RNA SEQUENCE; SIMPLE SEQUENCE REPEAT; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSCRIPTOMICS; CLUSTER ANALYSIS; CONTIG MAPPING; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE LOCUS; GENETIC MARKER; GENETICS; HEVEA; HIGH THROUGHPUT SEQUENCING; PLANT GENE; SEQUENCE ANALYSIS;

CLUSTER ANALYSIS; CONTIG MAPPING; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENES, PLANT; GENETIC LOCI; GENETIC MARKERS; GENOTYPE; HEVEA; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MICROSATELLITE REPEATS; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, RNA; TRANSCRIPTOME;

EID: 84899103071     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-236     Document Type: Article

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