-
1
-
-
52049091231
-
Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast
-
Conant GC, Wolfe KH (2008) Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast. Genetics 179(3):1681-1692.
-
(2008)
Genetics
, vol.179
, Issue.3
, pp. 1681-1692
-
-
Conant, G.C.1
Wolfe, K.H.2
-
3
-
-
33646572856
-
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. What is the role of genome duplication in the evolution of complexity and diversity?
-
SMBE Tri-National Young Investigators
-
Crow KD, Wagner GP; SMBE Tri-National Young Investigators (2006) Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. What is the role of genome duplication in the evolution of complexity and diversity? Mol Biol Evol 23(5):887-892.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.5
, pp. 887-892
-
-
Crow, K.D.1
Wagner, G.P.2
-
4
-
-
0036890022
-
Rapid divergence in expression between duplicate genes inferred from microarray data
-
DOI 10.1016/S0168-9525(02)02837-8, PII S0168952502028378
-
Gu ZL, Nicolae D, Lu HHS, Li WH (2002) Rapid divergence in expression between duplicate genes inferred from microarray data. Trends Genet 18(12):609-613. (Pubitemid 35346678)
-
(2002)
Trends in Genetics
, vol.18
, Issue.12
, pp. 609-613
-
-
Gu, Z.1
Nicolae, D.2
Lu, H.H.-S.3
Li, W.-H.4
-
5
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290(5494):1151-1155.
-
(2000)
Science
, vol.290
, Issue.5494
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
6
-
-
33144464980
-
Role of positive selection in the retention of duplicate genes in mammalian genomes
-
DOI 10.1073/pnas.0510388103
-
Shiu SH, Byrnes JK, Pan R, Zhang P, Li WH (2006) Role of positive selection in the retention of duplicate genes in mammalian genomes. Proc Natl Acad Sci USA 103(7):2232-2236. (Pubitemid 43271652)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.7
, pp. 2232-2236
-
-
Shiu, S.-H.1
Byrnes, J.K.2
Pan, R.3
Zhang, P.4
Li, W.-H.5
-
8
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Wellcome Trust Case Control Consortium
-
Conrad DF, et al.; Wellcome Trust Case Control Consortium (2010) Origins and functional impact of copy number variation in the human genome. Nature 464(7289):704-712.
-
(2010)
Nature
, vol.464
, Issue.7289
, pp. 704-712
-
-
Conrad, D.F.1
-
9
-
-
77955012237
-
Gene family size conservation is a good indicator of evolutionary rates
-
Chen FC, Chen CJ, Li WH, Chuang TJ (2010) Gene family size conservation is a good indicator of evolutionary rates. Mol Biol Evol 27(8):1750-1758.
-
(2010)
Mol Biol Evol
, vol.27
, Issue.8
, pp. 1750-1758
-
-
Chen, F.C.1
Chen, C.J.2
Li, W.H.3
Chuang, T.J.4
-
10
-
-
78649231644
-
Origins, evolution, and phenotypic impact of new genes
-
Kaessmann H (2010) Origins, evolution, and phenotypic impact of new genes. Genome Res 20(10):1313-1326.
-
(2010)
Genome Res
, vol.20
, Issue.10
, pp. 1313-1326
-
-
Kaessmann, H.1
-
11
-
-
75549087305
-
The evolution of gene duplications: Classifying and distinguishing between models
-
Innan H, Kondrashov F (2010) The evolution of gene duplications: Classifying and distinguishing between models. Nat Rev Genet 11(2):97-108.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.2
, pp. 97-108
-
-
Innan, H.1
Kondrashov, F.2
-
12
-
-
0038031633
-
Epigenetic silencing may aid evolution by gene duplication
-
Rodin SN, Riggs AD (2003) Epigenetic silencing may aid evolution by gene duplication. J Mol Evol 56(6):718-729.
-
(2003)
J Mol Evol
, vol.56
, Issue.6
, pp. 718-729
-
-
Rodin, S.N.1
Riggs, A.D.2
-
13
-
-
0028213910
-
Inactivation of gene expression in plants as a consequence of specific sequence duplication
-
Flavell RB (1994) Inactivation of gene expression in plants as a consequence of specific sequence duplication. Proc Natl Acad Sci USA 91(9):3490-3496.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, Issue.9
, pp. 3490-3496
-
-
Flavell, R.B.1
-
14
-
-
0035810998
-
Protein-coding genes are epigenetically regulated in Arabidopsis polyploids
-
Lee HS, Chen ZJ (2001) Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc Natl Acad Sci USA 98(12):6753-6758.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.12
, pp. 6753-6758
-
-
Lee, H.S.1
Chen, Z.J.2
-
15
-
-
84859033105
-
DNA methylation rebalances gene dosage after mammalian gene duplications
-
Chang AY, Liao BY (2012) DNA methylation rebalances gene dosage after mammalian gene duplications. Mol Biol Evol 29(1):133-144.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.1
, pp. 133-144
-
-
Chang, A.Y.1
Liao, B.Y.2
-
16
-
-
74549206356
-
Computational approaches for understanding the evolution of DNA methylation in animals
-
Yi SV, Goodisman MA (2009) Computational approaches for understanding the evolution of DNA methylation in animals. Epigenetics 4(8):551-556.
-
(2009)
Epigenetics
, vol.4
, Issue.8
, pp. 551-556
-
-
Yi, S.V.1
Goodisman, M.A.2
-
17
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
DOI 10.1038/ng1990, PII NG1990
-
Weber M, et al. (2007) Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet 39(4):457-466. (Pubitemid 46514772)
-
(2007)
Nature Genetics
, vol.39
, Issue.4
, pp. 457-466
-
-
Weber, M.1
Hellmann, I.2
Stadler, M.B.3
Ramos, L.4
Paabo, S.5
Rebhan, M.6
Schubeler, D.7
-
18
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
DOI 10.1073/pnas.0400782101
-
Su AI, et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA 101(16):6062-6067. (Pubitemid 38520528)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.16
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.P.11
Walker, J.R.12
Hogenesch, J.B.13
-
19
-
-
84876063296
-
The human placenta methylome
-
Schroeder DI, et al. (2013) The human placenta methylome. Proc Natl Acad Sci USA 110(15):6037-6042.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.15
, pp. 6037-6042
-
-
Schroeder, D.I.1
-
20
-
-
84864659030
-
The evolution of invertebrate gene body methylation
-
Sarda S, Zeng J, Hunt BG, Yi SV (2012) The evolution of invertebrate gene body methylation. Mol Biol Evol 29(8):1907-1916.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.8
, pp. 1907-1916
-
-
Sarda, S.1
Zeng, J.2
Hunt, B.G.3
Yi, S.V.4
-
21
-
-
80054994283
-
Identification of genetic elements that autonomously determine DNA methylation states
-
Lienert F, et al. (2011) Identification of genetic elements that autonomously determine DNA methylation states. Nat Genet 43(11):1091-1097.
-
(2011)
Nat Genet
, vol.43
, Issue.11
, pp. 1091-1097
-
-
Lienert, F.1
-
22
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2:28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
23
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
Bailey TL, Gribskov M (1998) Combining evidence using p-values: Application to sequence homology searches. Bioinformatics 14(1):48-54. (Pubitemid 28395676)
-
(1998)
Bioinformatics
, vol.14
, Issue.1
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
24
-
-
84943987463
-
Multiple comparisons among means
-
Dunn OJ (1961) Multiple comparisons among means. J Am Stat Assoc 56:52-64.
-
(1961)
J Am Stat Assoc
, vol.56
, pp. 52-64
-
-
Dunn, O.J.1
-
26
-
-
0028104109
-
Sp1 elements protect a CpG island from de novo methylation
-
DOI 10.1038/371435a0
-
Brandeis M, et al. (1994) Sp1 elements protect a CpG island from de novo methylation. Nature 371(6496):435-438. (Pubitemid 24302561)
-
(1994)
Nature
, vol.371
, Issue.6496
, pp. 435-438
-
-
Brandeis, M.1
Frank, D.2
Keshet, I.3
Siegfried, Z.4
Mendelsohn, M.5
Nemes, A.6
Temper, V.7
Razin, A.8
Cedar, H.9
-
27
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman RE, et al. (2012) The accessible chromatin landscape of the human genome. Nature 489(7414):75-82.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 75-82
-
-
Thurman, R.E.1
-
28
-
-
0020054260
-
Processed genes: A dispersed human immunoglobulin gene bearing evidence of RNA-type processing
-
DOI 10.1038/296321a0
-
Hollis GF, Hieter PA, McBride OW, Swan D, Leder P (1982) Processed genes: A dispersed human immunoglobulin gene bearing evidence of RNA-type processing. Nature 296(5855):321-325. (Pubitemid 12156536)
-
(1982)
Nature
, vol.296
, Issue.5855
, pp. 321-325
-
-
Hollis, G.F.1
Hieter, P.A.2
McBride, O.W.3
-
29
-
-
3342989681
-
Epigenetic programming by maternal behavior
-
DOI 10.1038/nn1276
-
Weaver IC, et al. (2004) Epigenetic programming by maternal behavior. Nat Neurosci 7(8):847-854. (Pubitemid 38989508)
-
(2004)
Nature Neuroscience
, vol.7
, Issue.8
, pp. 847-854
-
-
Weaver, I.C.G.1
Cervoni, N.2
Champagne, F.A.3
D'Alessio, A.C.4
Sharma, S.5
Seckl, J.R.6
Dymov, S.7
Szyf, M.8
Meaney, M.J.9
-
30
-
-
77958479693
-
Functional conservation of DNA methylation in the pea aphid and the honeybee
-
Hunt BG, Brisson JA, Yi SV, Goodisman MA (2010) Functional conservation of DNA methylation in the pea aphid and the honeybee. Genome Biol Evol 2:719-728.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 719-728
-
-
Hunt, B.G.1
Brisson, J.A.2
Yi, S.V.3
Goodisman, M.A.4
-
31
-
-
79952200574
-
DNA methylation and genome evolution in honeybee: Gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation
-
Zeng J, Yi SV (2010) DNA methylation and genome evolution in honeybee: Gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation. Genome Biol Evol 2:770-780.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 770-780
-
-
Zeng, J.1
Yi, S.V.2
-
32
-
-
84873156452
-
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
-
Takuno S, Gaut BS (2013) Gene body methylation is conserved between plant orthologs and is of evolutionary consequence. Proc Natl Acad Sci USA 110(5):1797-1802.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.5
, pp. 1797-1802
-
-
Takuno, S.1
Gaut, B.S.2
-
33
-
-
84876520219
-
Patterning and regulatory associations of DNA methylation are mirrored by histone modifications in insects
-
Hunt BG, Glastad KM, Yi SV, Goodisman MAD (2013) Patterning and regulatory associations of DNA methylation are mirrored by histone modifications in insects. Genome Biol Evol 5(3):591-598.
-
(2013)
Genome Biol Evol
, vol.5
, Issue.3
, pp. 591-598
-
-
Hunt, B.G.1
Glastad, K.M.2
Yi, S.V.3
Goodisman, M.A.D.4
-
34
-
-
84867145980
-
On the presence and role of human gene-body DNA methylation
-
Jjingo D, Conley AB, Yi SV, Lunyak VV, Jordan IK (2012) On the presence and role of human gene-body DNA methylation. Oncotarget 3(4):462-474.
-
(2012)
Oncotarget
, vol.3
, Issue.4
, pp. 462-474
-
-
Jjingo, D.1
Conley, A.B.2
Yi, S.V.3
Lunyak, V.V.4
Jordan, I.K.5
-
35
-
-
84866081028
-
Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution
-
Zeng J, et al. (2012) Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution. Am J Hum Genet 91(3):455-465.
-
(2012)
Am J Hum Genet
, vol.91
, Issue.3
, pp. 455-465
-
-
Zeng, J.1
-
36
-
-
84874196086
-
Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice)
-
Wang Y, Wang X, Lee T-H, Mansoor S, Paterson AH (2013) Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice). New Phytol 198(1):274-283.
-
(2013)
New Phytol
, vol.198
, Issue.1
, pp. 274-283
-
-
Wang, Y.1
Wang, X.2
Lee, T.-H.3
Mansoor, S.4
Paterson, A.H.5
-
37
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng S, et al. (2010) Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA 107(19):8689-8694.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.19
, pp. 8689-8694
-
-
Feng, S.1
-
38
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
DOI 10.1038/nrg2341, PII NRG2341
-
Suzuki MM, Bird A (2008) DNA methylation landscapes: Provocative insights from epigenomics. Nat Rev Genet 9(6):465-476. (Pubitemid 351693975)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.6
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
39
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A, McDaniel IE, Silva P, Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328(5980):916-919.
-
(2010)
Science
, vol.328
, Issue.5980
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
40
-
-
84876683784
-
DNA methylation and transcriptional noise
-
Huh I, Zeng J, Park T, Yi SV (2013) DNA methylation and transcriptional noise. Epigenetics Chromatin 6(1):9.
-
(2013)
Epigenetics Chromatin
, vol.6
, Issue.1
, pp. 9
-
-
Huh, I.1
Zeng, J.2
Park, T.3
Yi, S.V.4
-
41
-
-
77954504873
-
Conserved role of intragenic DNA methylation in regulating alternative promoters
-
Maunakea AK, et al. (2010) Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature 466(7303):253-257.
-
(2010)
Nature
, vol.466
, Issue.7303
, pp. 253-257
-
-
Maunakea, A.K.1
-
42
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler MB, et al. (2011) DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480(7378):490-495.
-
(2011)
Nature
, vol.480
, Issue.7378
, pp. 490-495
-
-
Stadler, M.B.1
-
43
-
-
0031573415
-
Comparison of DNA sequences with protein sequences
-
DOI 10.1006/geno.1997.4995
-
Pearson WR, Wood T, Zhang Z, Miller W (1997) Comparison of DNA sequences with protein sequences. Genomics 46(1):24-36. (Pubitemid 27527688)
-
(1997)
Genomics
, vol.46
, Issue.1
, pp. 24-36
-
-
Pearson, W.R.1
Wood, T.2
Zhang, Z.3
Miller, W.4
-
44
-
-
60849098170
-
Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes
-
Park C, Makova KD (2009) Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes. Genome Biol 10(1):R10.
-
(2009)
Genome Biol
, vol.10
, Issue.1
-
-
Park, C.1
Makova, K.D.2
-
45
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost B (1999) Twilight zone of protein sequence alignments. Protein Eng 12(2):85-94.
-
(1999)
Protein Eng
, vol.12
, Issue.2
, pp. 85-94
-
-
Rost, B.1
-
46
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5):1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
47
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z (2007) PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 24(8):1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
48
-
-
34247352040
-
Evolutionary and biomedical insights from the rhesus macaque genome
-
DOI 10.1126/science.1139247
-
Gibbs RA, et al.; Rhesus Macaque Genome Sequencing and Analysis Consortium (2007) Evolutionary and biomedical insights from the rhesus macaque genome. Science 316(5822):222-234. (Pubitemid 46633091)
-
(2007)
Science
, vol.316
, Issue.5822
, pp. 222-234
-
-
Gibbs, R.A.1
Rogers, J.2
Katze, M.G.3
Bumgarner, R.4
Weinstock, G.M.5
Mardis, E.R.6
Remington, K.A.7
Strausberg, R.L.8
Venter, J.C.9
Wilson, R.K.10
Batzer, M.A.11
Bustamante, C.D.12
Eichler, E.E.13
Hahn, M.W.14
Hardison, R.C.15
Makova, K.D.16
Miller, W.17
Milosavljevic, A.18
Palermo, R.E.19
Siepel, A.20
Sikela, J.M.21
Attaway, T.22
Bell, S.23
Bernard, K.E.24
Buhay, C.J.25
Chandrabose, M.N.26
Dao, M.27
Davis, C.28
Delehaunty, K.D.29
Ding, Y.30
Dinh, H.H.31
Dugan-Rocha, S.32
Fulton, L.A.33
Gabisi, R.A.34
Garner, T.T.35
Godfrey, J.36
Hawes, A.C.37
Hernandez, J.38
Hines, S.39
Holder, M.40
Hume, J.41
Jhangiani, S.N.42
Joshi, V.43
Khan, Z.M.44
Kirkness, E.F.45
Cree, A.46
Fowler, R.G.47
Lee, S.48
Lewis, L.R.49
Li, Z.50
Liu, Y.-S.51
Moore, S.M.52
Muzny, D.53
Nazareth, L.V.54
Dinh, N.N.55
Okwuonu, G.O.56
Pai, G.57
Parker, D.58
Paul, H.A.59
Pfannkoch, C.60
Pohl, C.S.61
Rogers, Y.-H.62
Ruiz, S.J.63
Sabo, A.64
Santibanez, J.65
Schneider, B.W.66
Smith, S.M.67
Sodergren, E.68
Svatek, A.F.69
Utterback, T.R.70
Vattathil, S.71
Warren, W.72
White, C.S.73
Chinwalla, A.T.74
Feng, Y.75
Halpern, A.L.76
Hillier, L.W.77
Huang, X.78
Minx, P.79
Nelson, J.O.80
Pepin, K.H.81
Qin, X.82
Sutton, G.G.83
Venter, E.84
Walenz, B.P.85
Wallis, J.W.86
Worley, K.C.87
Yang, S.-P.88
Jones, S.M.89
Marra, M.A.90
Rocchi, M.91
Schein, J.E.92
Baertsch, R.93
Clarke, L.94
Csuros, M.95
Glasscock, J.96
Harris, R.A.97
Havlak, P.98
Jackson, A.R.99
more..
-
49
-
-
77952679366
-
Ohnologs in the human genome are dosage balanced and frequently associated with disease
-
Makino T, McLysaght A (2010) Ohnologs in the human genome are dosage balanced and frequently associated with disease. Proc Natl Acad Sci USA 107(20):9270-9274.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.20
, pp. 9270-9274
-
-
Makino, T.1
McLysaght, A.2
-
50
-
-
84860643156
-
Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives
-
Nazor KL, et al. (2012) Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives. Cell Stem Cell 10(5):620-634.
-
(2012)
Cell Stem Cell
, vol.10
, Issue.5
, pp. 620-634
-
-
Nazor, K.L.1
-
51
-
-
84863230488
-
IMA: An R package for high-throughput analysis of Illumina's 450K Infinium methylation data
-
Wang D, et al. (2012) IMA: An R package for high-throughput analysis of Illumina's 450K Infinium methylation data. Bioinformatics 28(5):729-730.
-
(2012)
Bioinformatics
, vol.28
, Issue.5
, pp. 729-730
-
-
Wang, D.1
-
52
-
-
79251567720
-
DNA methylation of the first exon is tightly linked to transcriptional silencing
-
Brenet F, et al. (2011) DNA methylation of the first exon is tightly linked to transcriptional silencing. PLoS ONE 6(1):e14524.
-
(2011)
PLoS ONE
, vol.6
, Issue.1
-
-
Brenet, F.1
-
53
-
-
84866864992
-
Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons
-
Chuang T-J, Chen F-C, Chen Y-Z (2012) Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons. Proc Natl Acad Sci USA 109(39):15841-15846.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.39
, pp. 15841-15846
-
-
Chuang, T.-J.1
Chen, F.-C.2
Chen, Y.-Z.3
-
54
-
-
0035735265
-
Computational identification of promoters and first exons in the human genome
-
DOI 10.1038/ng780
-
Davuluri RV, Grosse I, Zhang MQ (2001) Computational identification of promoters and first exons in the human genome. Nat Genet 29(4):412-417. (Pubitemid 34326691)
-
(2001)
Nature Genetics
, vol.29
, Issue.4
, pp. 412-417
-
-
Davuluri, R.V.1
Grosse, I.2
Zhang, M.Q.3
-
55
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Trapnell C, et al. (2013) Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol 31(1):46-53.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.1
, pp. 46-53
-
-
Trapnell, C.1
-
56
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7(3):562-578.
-
(2012)
Nat Protoc
, vol.7
, Issue.3
, pp. 562-578
-
-
Trapnell, C.1
-
57
-
-
33646588998
-
Correlated asymmetry of sequence and functional divergence between duplicate proteins of Saccharomyces cerevisiae
-
Kim SH, Yi SV (2006) Correlated asymmetry of sequence and functional divergence between duplicate proteins of Saccharomyces cerevisiae. Mol Biol Evol 23(5):1068-1075.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.5
, pp. 1068-1075
-
-
Kim, S.H.1
Yi, S.V.2
-
58
-
-
20144376345
-
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
-
DOI 10.1093/bioinformatics/bti042
-
Yanai I, et al. (2005) Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21(5):650-659. (Pubitemid 40424791)
-
(2005)
Bioinformatics
, vol.21
, Issue.5
, pp. 650-659
-
-
Yanai, I.1
Benjamin, H.2
Shmoish, M.3
Chalifa-Caspi, V.4
Shklar, M.5
Ophir, R.6
Bar-Even, A.7
Horn-Saban, S.8
Safran, M.9
Domany, E.10
Lancet, D.11
Shmueli, O.12
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