-
1
-
-
84866294456
-
Gene balance hypo thesis: Connecting issues of dosage sensitivity across biological disciplines
-
Birchler, J.A and Veitia, R.A. 2012, Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines, Proc. Natl. Acad. Sci. USA, 109, 14746-53
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 14746-14753
-
-
Birchler, J.A.1
Veitia, R.A.2
-
2
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao, Y., Wickett, N.J., Ayyampalayam, S., et al. 2011, Ancestral polyploidy in seed plants and angiosperms, Nature, 473, 97-100
-
(2011)
Nature
, vol.473
, pp. 97-100
-
-
Jiao, Y.1
Wickett, N.J.2
Ayyampalayam, S.3
-
3
-
-
75949117260
-
Molecular mechanisms of polyploidyand hybrid vigor
-
Chen, Z.J. 2010, Molecular mechanisms of polyploidyand hybrid vigor, Trends Plant Sci., 15, 57-71
-
(2010)
Trends Plant Sci
, vol.15
, pp. 57-71
-
-
Chen, Z.J.1
-
4
-
-
12844257041
-
Genomic changes in synthetic A thaliana polyploids
-
Madlung, A., Tyagi, A.P., Watson, B., et al. 2005, Genomic changes in synthetic A thaliana polyploids, Plant J., 41, 221-30
-
(2005)
Plant J.
, vol.41
, pp. 221-230
-
-
Madlung, A.1
Tyagi, A.P.2
Watson, B.3
-
5
-
-
73949158149
-
Changes in genomic methylation patterns during the formation of triploid asexual dandelion lineages
-
Verhoeven, K.J., Van Dijk, P.J and Biere, A. 2010, Changes in genomic methylation patterns during the formation of triploid asexual dandelion lineages, Mol. Ecol., 19, 315-24
-
(2010)
Mol. Ecol
, vol.19
, pp. 315-324
-
-
Verhoeven, K.J.1
Van Dijk, P.J.2
Biere, A.3
-
6
-
-
0345149793
-
Epigenetic phenomena and the evolution of plant allopolyploids
-
Liu, B. andWendel, J.F. 2003, Epigenetic phenomena and the evolution of plant allopolyploids, Mol. Phylogenet. Evol., 29, 365-79
-
(2003)
Mol. Phylogenet. Evol
, vol.29
, pp. 365-379
-
-
Liu, B.1
Wendel, J.F.2
-
7
-
-
84858611729
-
Nextgeneration sequencing and genome evolution in allopolyploids
-
Buggs, R.J., Renny-Byfield, S., Chester, M., et al. 2012,Nextgeneration sequencing and genome evolution in allopolyploids, Am. J. Bot., 99, 372-82
-
(2012)
Am. J. Bot
, vol.99
, pp. 372-382
-
-
Buggs, R.J.1
Renny-Byfield, S.2
Chester, M.3
-
8
-
-
75849147404
-
Gene expression analysis at the intersection of ploidy and hybridity in maize
-
Riddle, N.C., Jiang, H., An, L., Doerge, R and Birchler, J.A. 2010, Gene expression analysis at the intersection of ploidy and hybridity in maize, Theor. Appl. Genet., 120, 341-53
-
(2010)
Theor. Appl. Genet
, vol.120
, pp. 341-353
-
-
Riddle, N.C.1
Jiang, H.2
An, L.3
Doerge, R.4
Birchler, J.A.5
-
9
-
-
84873736008
-
Genomic dosage effects on heterosis in triploid maize
-
Yao, H., Dogra Gray, A., Auger, D.L and Birchler, J.A. 2013, Genomic dosage effects on heterosis in triploid maize, Proc. Natl. Acad. Sci. USA, 110, 2665-9
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 2665-2669
-
-
Yao, H.1
Dogra Gray, A.2
Auger, D.L.3
Birchler, J.A.4
-
10
-
-
0034045964
-
Parent-of-origin effects on seed development in A thaliana require DNA methylation
-
Adams, S., Vinkenoog, R., Spielman, M., Dickinson, H.G and Scott, R.J. 2000, Parent-of-origin effects on seed development in A thaliana require DNA methylation, Development, 127, 2493-502
-
(2000)
Development
, vol.127
, pp. 2493-2502
-
-
Adams, S.1
Vinkenoog, R.2
Spielman, M.3
Dickinson, H.G.4
Scott, R.J.5
-
11
-
-
0031670487
-
Parent-of-origin effects on seed development in A thaliana
-
Scott, R.J., Spielman, M., Bailey, J and Dickinson, H.G. 1998, Parent-of-origin effects on seed development in A thaliana, Development, 125, 3329-41
-
(1998)
Development
, vol.125
, pp. 3329-3341
-
-
Scott, R.J.1
Spielman, M.2
Bailey, J.3
Dickinson, H.G.4
-
12
-
-
84879420693
-
Ploidy and hybridity effects on growth vigor and gene expression in A thaliana hybrids and their parents
-
Miller, M., Zhang, C and Chen, Z.J. 2012, Ploidy and hybridity effects on growth vigor and gene expression in A thaliana hybrids and their parents, G3 (Bethesda), 2, 505-13
-
(2012)
G3 (Bethesda
, vol.2
, pp. 505-513
-
-
Miller, M.1
Zhang, C.2
Chen, Z.J.3
-
13
-
-
0042667121
-
Formation of stable epialleles and their paramutationlike interaction in tetraploid A thaliana
-
Mittelsten Scheid, O., Afsar, K and Paszkowski, J. 2003, Formation of stable epialleles and their paramutationlike interaction in tetraploid A thaliana, Nat. Genet., 34, 450-4
-
(2003)
Nat. Genet
, vol.34
, pp. 450-454
-
-
Mittelsten Scheid, O.1
Afsar, K.2
Paszkowski, J.3
-
14
-
-
0030003670
-
Dosage effects on gene expression in a maize ploidy series
-
Guo, M., Davis, D and Birchler, J.A. 1996, Dosage effects on gene expression in a maize ploidy series, Genetics, 142, 1349-55
-
(1996)
Genetics
, vol.142
, pp. 1349-1355
-
-
Guo, M.1
Davis, D.2
Birchler, J.A.3
-
15
-
-
13744261166
-
Nonadditive gene expression in diploid and triploid hybrids of maize
-
Auger, D.L., Gray, A.D., Ream, T.S., Kato, A., Coe, E.H. Jr and Birchler, J.A. 2005, Nonadditive gene expression in diploid and triploid hybrids of maize, Genetics, 169, 389-97
-
(2005)
Genetics
, vol.169
, pp. 389-397
-
-
Auger, D.L.1
Gray, A.D.2
Ream, T.S.3
Kato, A.4
Coe Jr., E.H.5
Birchler, J.A.6
-
16
-
-
78049318554
-
Impact of natural genetic variation on the transcriptome of autotetraploid A thaliana
-
Yu, Z., Haberer, G., Matthes, M., et al. 2010, Impact of natural genetic variation on the transcriptome of autotetraploid A thaliana, Proc. Natl. Acad. Sci. USA, 107, 17809-14
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 17809-17814
-
-
Yu, Z.1
Haberer, G.2
Matthes, M.3
-
17
-
-
77950938195
-
Differential sensitivity of the A thaliana transcriptome and enhancers to the effects of genome doubling
-
Pignatta, D., Dilkes, B.P., Yoo, S.-Y., et al. 2010, Differential sensitivity of the A thaliana transcriptome and enhancers to the effects of genome doubling, New Phytol., 186, 194-206
-
(2010)
New Phytol
, vol.186
, pp. 194-206
-
-
Pignatta, D.1
Dilkes, B.P.2
Yoo, S.-Y.3
-
18
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in A thaliana
-
Zhang, X., Yazaki, J., Sundaresan, A., et al. 2006, Genome-wide high-resolution mapping and functional analysis of DNA methylation in A thaliana, Cell, 126, 1189-201
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
-
19
-
-
53149149377
-
Identification of the candidate genes regulated by rnadirected dna methylation in a thaliana
-
Kurihara, Y., Matsui, A., Kawashima, M., et al. 2008, Identification of the candidate genes regulated by RNAdirected DNA methylation in A thaliana, Biochem. Biophys. Res. Commun., 376, 553-7
-
(2008)
Biochem. Biophys. Res. Commun
, vol.376
, pp. 553-557
-
-
Kurihara, Y.1
Matsui, A.2
Kawashima, M.3
-
20
-
-
84860109530
-
Genome-wide analysis of dna methylation and gene expression changes in two a thaliana ecotypes and their reciprocal hybrids
-
Shen, H., He, H., Li, J., et al. 2012,Genome-wide analysis of DNA methylation and gene expression changes in two A thaliana ecotypes and their reciprocal hybrids, Plant Cell, 24, 875-92
-
(2012)
Plant Cell
, vol.24
, pp. 875-892
-
-
Shen, H.1
He, H.2
Li, J.3
-
21
-
-
0034928217
-
Growth stage-based phenotypic analysis of A thaliana: A model for high throughput functional genomics in plants
-
Boyes, D.C., Zayed, A.M., Ascenzi, R., et al. 2001, Growth stage-based phenotypic analysis of A thaliana: A model for high throughput functional genomics in plants, Plant Cell, 13, 1499-510
-
(2001)
Plant Cell
, vol.13
, pp. 1499-1510
-
-
Boyes, D.C.1
Zayed, A.M.2
Ascenzi, R.3
-
22
-
-
70350142925
-
Global analysis of allelespecific expression in A thaliana
-
Zhang, X and Borevitz, J.O. 2009, Global analysis of allelespecific expression in A thaliana, Genetics, 182, 943-54
-
(2009)
Genetics
, vol.182
, pp. 943-954
-
-
Zhang, X.1
Borevitz, J.O.2
-
23
-
-
84874204884
-
Gamete fertility and ovule number variation in selfed reciprocal F1 hybrid triploid plants are heritable and display epigenetic parent-of-origin effects
-
Duszynska, D., McKeown, P.C., Juenger, T.E., Pietraszewska-Bogiel, A., Geelen, D and Spillane, C. 2013, Gamete fertility and ovule number variation in selfed reciprocal F1 hybrid triploid plants are heritable and display epigenetic parent-of-origin effects, New Phytol., 198, 71-81
-
(2013)
New Phytol
, vol.198
, pp. 71-81
-
-
Duszynska, D.1
McKeown, P.C.2
Juenger, T.E.3
Pietraszewska-Bogiel, A.4
Geelen, D.5
Spillane, C.6
-
24
-
-
0037348718
-
Large-scale identification of single-feature polymorphisms in complex genomes
-
Borevitz, J.O., Liang, D., Plouffe, D., et al. 2003, Large-scale identification of single-feature polymorphisms in complex genomes, Genome Res., 13, 513-23
-
(2003)
Genome Res
, vol.13
, pp. 513-523
-
-
Borevitz, J.O.1
Liang, D.2
Plouffe, D.3
-
25
-
-
57849136008
-
Whole genome transcriptome polymorphisms in A thaliana
-
Zhang, X., Byrnes, J.K., Gal, T.S., Li, W.H and Borevitz, J.O. 2008, Whole genome transcriptome polymorphisms in A thaliana, Genome Biol., 9, R165
-
(2008)
Genome Biol.
, vol.9
-
-
Zhang, X.1
Byrnes, J.K.2
Gal, T.S.3
Li, W.H.4
Borevitz, J.O.5
-
26
-
-
42149091002
-
Genomic imprinting in plants
-
Garnier, O., Laoueillé-Duprat, S and Spillane, C. 2008, Genomic imprinting in plants, Epigenetics, 3, 14-20
-
(2008)
Epigenetics
, vol.3
, pp. 14-20
-
-
Garnier, O.1
Laoueillé-Duprat, S.2
Spillane, C.3
-
27
-
-
79959848590
-
High-resolution analysis of parent-of-origin allelic expression in the A thaliana endosperm
-
Wolff, P.,Weinhofer, I.,Seguin, J.,etal.2011,High-resolution analysis of parent-of-origin allelic expression in the A thaliana endosperm, PLoS Genet., 7, e1002126
-
(2011)
PLoS Genet
, vol.7
-
-
Wolff, P.1
Weinhofer, I.2
Seguin, J.3
-
28
-
-
80051589791
-
Identification of imprinted genes subject to parent-oforigin specific expression in A thaliana seeds
-
McKeown, P., Laouielle-Duprat, S., Prins, P., et al. 2011, Identification of imprinted genes subject to parent-oforigin specific expression in A thaliana seeds, BMC Plant Biol., 11, 113
-
(2011)
BMC Plant Biol
, vol.11
, pp. 113
-
-
McKeown, P.1
Laouielle-Duprat, S.2
Prins, P.3
-
29
-
-
79952143430
-
Regulation of imprinted gene expression in A thaliana endosperm
-
Hsieh, T.F., Shin, J., Uzawa, R., et al. 2011, Regulation of imprinted gene expression in A thaliana endosperm, Proc. Natl. Acad. Sci., 108, 1755
-
(2011)
Proc. Natl. Acad. Sci
, vol.108
, pp. 1755
-
-
Hsieh, T.F.1
Shin, J.2
Uzawa, R.3
-
30
-
-
33846689706
-
Using gostats to test gene lists for go term association
-
Falcon, S and Gentleman, R. 2007, Using GOstats to test gene lists for GO term association, Bioinformatics, 23, 257-8
-
(2007)
Bioinformatics
, vol.23
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
31
-
-
80052294216
-
Unstable transcripts in A thaliana allotetraploids are associated with nonadditive gene expression in response to abiotic and biotic stresses
-
Kim, E.D and Chen, Z.J. 2011, Unstable transcripts in A thaliana allotetraploids are associated with nonadditive gene expression in response to abiotic and biotic stresses, PloS One, 6, e24251
-
(2011)
PloS One
, vol.6
-
-
Kim, E.D.1
Chen, Z.J.2
-
32
-
-
33644762929
-
Genomewide nonadditive gene regulation in A thaliana allotetraploids
-
Wang, J., Tian, L., Lee, H.S., et al. 2006, Genomewide nonadditive gene regulation in A thaliana allotetraploids, Genetics, 172, 507-17
-
(2006)
Genetics
, vol.172
, pp. 507-517
-
-
Wang, J.1
Tian, L.2
Lee, H.S.3
-
33
-
-
84881243153
-
Polyploids exhibit higher potassium uptake and salinity tolerance in A thaliana
-
Chao, D.Y., Dilkes, B., Luo, H., et al. 2013, Polyploids exhibit higher potassium uptake and salinity tolerance in A thaliana, Science, 341, 658-9
-
(2013)
Science
, vol.341
, pp. 658-659
-
-
Chao, D.Y.1
Dilkes, B.2
Luo, H.3
-
34
-
-
33845880624
-
Genome-wide analysis of A thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman, D., Gehring, M., Tran, R.K., Ballinger, T and Henikoff, S. 2007, Genome-wide analysis of A thaliana DNA methylation uncovers an interdependence between methylation and transcription, Nat. Genet., 39, 61-9
-
(2007)
Nat. Genet
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
-
35
-
-
84979950088
-
Epigenetic natural variation in A thaliana
-
Vaughn, M.W., Tanurdzic, M., Lippman, Z., et al. 2007, Epigenetic natural variation in A thaliana, PLoS Biol., 5, e174
-
(2007)
PLoS Biol
, vol.5
-
-
Vaughn, M.W.1
Tanurdzic, M.2
Lippman, Z.3
-
36
-
-
40749109894
-
Shotgun bisulphite sequencing of the A thaliana genome reveals DNA methylation patterning
-
Cokus, S.J., Feng, S., Zhang, X., et al. 2008, Shotgun bisulphite sequencing of the A thaliana genome reveals DNA methylation patterning, Nature, 452, 215-9
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
-
37
-
-
41949131536
-
Global analysis of genetic, epigenetic and transcriptional polymorphisms in A thaliana using whole genome tiling arrays
-
Zhang, X., Shiu, S.H., Cal, A and Borevitz, J.O. 2008, Global analysis of genetic, epigenetic and transcriptional polymorphisms in A thaliana using whole genome tiling arrays, PLoS Genet., 4, e1000032
-
(2008)
PLoS Genet
, vol.4
-
-
Zhang, X.1
Shiu, S.H.2
Cal, A.3
Borevitz, J.O.4
-
38
-
-
84876195987
-
Generation of a luciferase-based reporter for chh and cg dna methylation in a thaliana
-
Dinh, T.T., O'Leary, M.,Won, S.Y., et al. 2013, Generation of a luciferase-based reporter for CHH and CG DNA methylation in A thaliana, Silence, 4, 1
-
(2013)
Silence
, vol.4
, pp. 1
-
-
Dinh, T.T.1
O'Leary, M.2
Won, S.Y.3
-
39
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the a thaliana methylome
-
Stroud, H., Greenberg, M.V., Feng, S., Bernatavichute, Y.V and Jacobsen, S.E. 2013, Comprehensive analysis of silencing mutants reveals complex regulation of the A thaliana methylome, Cell, 152, 352-64
-
(2013)
Cell
, vol.152
, pp. 352-364
-
-
Stroud, H.1
Greenberg, M.V.2
Feng, S.3
Bernatavichute, Y.V.4
Jacobsen, S.E.5
-
40
-
-
84884695071
-
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
-
Regulski, M., Lu, Z., Kendall, J., et al. 2013, The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA, Genome Res., 23, 1651-62
-
(2013)
Genome Res
, vol.23
, pp. 1651-1662
-
-
Regulski, M.1
Lu, Z.2
Kendall, J.3
-
41
-
-
84861062626
-
Body-methylated genes in A thaliana are functionally important and evolve slowly
-
Takuno, S.andGaut, B.S.2012,Body-methylated genes in A thaliana are functionally important and evolve slowly, Mol. Biol. Evol., 29, 219-27
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 219-227
-
-
Takuno, S.1
Gaut, B.S.2
-
42
-
-
12544254467
-
Dna methylation profiling identifies cg methylation clusters in a thaliana genes
-
Tran, R.K., Henikoff, J.G., Zilberman, D., Ditt, R.F., Jacobsen, S.E and Henikoff, S. 2005, DNA methylation profiling identifies CG methylation clusters in A thaliana genes, Curr. Biol., 15, 154-9
-
(2005)
Curr. Biol
, vol.15
, pp. 154-159
-
-
Tran, R.K.1
Henikoff, J.G.2
Zilberman, D.3
Ditt, R.F.4
Jacobsen, S.E.5
Henikoff, S.6
-
43
-
-
70350227275
-
Small rnas and their roles in plant development
-
Chen, X. 2009, Small RNAs and their roles in plant development, Annu. Rev. Cell. Dev. Biol., 25, 21-44
-
(2009)
Annu. Rev. Cell. Dev. Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
44
-
-
84859464802
-
Maternal sirnas as regulators of parentalgenomeimbalance and gene expression in endosperm of a thaliana seeds
-
Lu, J., Zhang, C., Baulcombe, D.C and Chen, Z.J. 2012, Maternal siRNAs as regulators of parentalgenomeimbalance and gene expression in endosperm of A thaliana seeds, Proc. Natl. Acad. Sci. USA, 109, 5529-34
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5529-5534
-
-
Lu, J.1
Zhang, C.2
Baulcombe, D.C.3
Chen, Z.J.4
-
45
-
-
79952303685
-
Transposable elements and small rnas contribute to gene expression divergence between a thaliana and a thaliana lyrata
-
Hollister, J.D., Smith, L.M., Guo, Y.L., Ott, F., Weigel, D and Gaut, B.S. 2011, Transposable elements and small RNAs contribute to gene expression divergence between A thaliana and A thaliana lyrata, Proc. Natl. Acad. Sci. USA, 108, 2322-7
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 2322-2327
-
-
Hollister, J.D.1
Smith, L.M.2
Guo, Y.L.3
Ott, F.4
Weigel, D.5
Gaut, B.S.6
-
46
-
-
78049414227
-
Epigenetic reprogramming in plant and animal development
-
Feng, S., Jacobsen, S.E and Reik, W. 2010, Epigenetic reprogramming in plant and animal development, Science, 330, 622-7
-
(2010)
Science
, vol.330
, pp. 622-627
-
-
Feng, S.1
Jacobsen, S.E.2
Reik, W.3
-
47
-
-
84881119178
-
Genetic and genomic interactions of animals with different ploidy levels
-
Bogart, J.P and Bi, K. 2013, Genetic and genomic interactions of animals with different ploidy levels, Cytogenet. Genome Res., 140, 1173
-
(2013)
Cytogenet. Genome Res
, vol.140
, pp. 1173
-
-
Bogart, J.P.1
Bi, K.2
|