메뉴 건너뛰기




Volumn 289, Issue 16, 2014, Pages 10950-10957

A human short open reading frame (sORF)-Encoded polypeptide that stimulates DNA end joining

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDES; POLYPEPTIDES;

EID: 84898984913     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.C113.533968     Document Type: Article
Times cited : (124)

References (41)
  • 1
    • 84894380391 scopus 로고    scopus 로고
    • Emerging evidence for functional peptides encoded by short open reading frames
    • Andrews, S. J., and Rothnagel, J. A. (2014) Emerging evidence for functional peptides encoded by short open reading frames. Nat. Rev. Genet. 15, 193-204
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 193-204
    • Andrews, S.J.1    Rothnagel, J.A.2
  • 2
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia, N. T., Ghaemmaghami, S., Newman, J. R., and Weissman, J. S. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 3
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia, N. T., Lareau, L. F., and Weissman, J. S. (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147, 789-802
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 4
    • 84879936964 scopus 로고    scopus 로고
    • Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and nearcognate translation initiation events
    • Menschaert, G., Van Criekinge, W., Notelaers, T., Koch, A., Crappé, J., Gevaert, K., and Van Damme, P. (2013) Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and nearcognate translation initiation events. Mol. Cell. Proteomics 12, 1780-1790
    • (2013) Mol. Cell. Proteomics , vol.12 , pp. 1780-1790
    • Menschaert, G.1    Van Criekinge, W.2    Notelaers, T.3    Koch, A.4    Crappé, J.5    Gevaert, K.6    Van Damme, P.7
  • 9
    • 34249021370 scopus 로고    scopus 로고
    • Peptides encoded by short orfs control development and define a new eukaryotic gene family
    • Galindo, M. I., Pueyo, J. I., Fouix, S., Bishop, S. A., and Couso, J. P. (2007) Peptides encoded by short ORFs control development and define a new eukaryotic gene family. PLoS Biol. 5, e106
    • (2007) PLoS Biol. , vol.5
    • Galindo, M.I.1    Pueyo, J.I.2    Fouix, S.3    Bishop, S.A.4    Couso, J.P.5
  • 10
    • 34447573973 scopus 로고    scopus 로고
    • Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mrna
    • Kondo, T., Hashimoto, Y., Kato, K., Inagaki, S., Hayashi, S., and Kageyama, Y. (2007) Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA. Nat. Cell Biol. 9, 660-665
    • (2007) Nat. Cell Biol. , vol.9 , pp. 660-665
    • Kondo, T.1    Hashimoto, Y.2    Kato, K.3    Inagaki, S.4    Hayashi, S.5    Kageyama, Y.6
  • 11
    • 84883487014 scopus 로고    scopus 로고
    • Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames
    • Magny, E. G., Pueyo, J. I., Pearl, F. M., Cespedes, M. A., Niven, J. E., Bishop, S. A., and Couso, J. P. (2013) Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames. Science 341, 1116-1120
    • (2013) Science , vol.341 , pp. 1116-1120
    • Magny, E.G.1    Pueyo, J.I.2    Pearl, F.M.3    Cespedes, M.A.4    Niven, J.E.5    Bishop, S.A.6    Couso, J.P.7
  • 13
    • 0036670296 scopus 로고    scopus 로고
    • The polaris gene of arabidopsis encodes a predicted peptide required for correct root growth and leaf vascular patterning
    • Casson, S. A., Chilley, P. M., Topping, J. F., Evans, I. M., Souter, M. A., and Lindsey, K. (2002) The POLARIS gene of Arabidopsis encodes a predicted peptide required for correct root growth and leaf vascular patterning. Plant Cell 14, 1705-1721
    • (2002) Plant Cell , vol.14 , pp. 1705-1721
    • Casson, S.A.1    Chilley, P.M.2    Topping, J.F.3    Evans, I.M.4    Souter, M.A.5    Lindsey, K.6
  • 15
    • 84891845096 scopus 로고    scopus 로고
    • Mining the genome of arabidopsis thaliana as a basis for the identification of novel bioactive peptides involved in oxidative stress tolerance
    • De Coninck, B., Carron, D., Tavormina, P., Willem, L., Craik, D. J., Vos, C., Thevissen, K., Mathys, J., and Cammue, B. P. (2013) Mining the genome of Arabidopsis thaliana as a basis for the identification of novel bioactive peptides involved in oxidative stress tolerance. J. Exp. Bot. 64, 5297-5307
    • (2013) J. Exp. Bot. , vol.64 , pp. 5297-5307
    • De Coninck, B.1    Carron, D.2    Tavormina, P.3    Willem, L.4    Craik, D.J.5    Vos, C.6    Thevissen, K.7    Mathys, J.8    Cammue, B.P.9
  • 16
    • 0034805623 scopus 로고    scopus 로고
    • Mechanisms of neuroprotection by a novel rescue factor humanin from swedish mutant amyloid precursor protein
    • Hashimoto, Y., Ito, Y., Niikura, T., Shao, Z., Hata, M., Oyama, F., and Nishimoto, I. (2001) Mechanisms of neuroprotection by a novel rescue factor humanin from Swedish mutant amyloid precursor protein. Biochem. Biophys. Res. Commun. 283, 460-468
    • (2001) Biochem. Biophys. Res. Commun. , vol.283 , pp. 460-468
    • Hashimoto, Y.1    Ito, Y.2    Niikura, T.3    Shao, Z.4    Hata, M.5    Oyama, F.6    Nishimoto, I.7
  • 18
    • 33845937721 scopus 로고    scopus 로고
    • 2-Step purification of the Ku DNA repair protein expressed in Escherichia coli
    • Hanakahi, L. A. (2007) 2-Step purification of the Ku DNA repair protein expressed in Escherichia coli. Protein Expr. Purif. 52, 139-145
    • (2007) Protein Expr. Purif. , vol.52 , pp. 139-145
    • Hanakahi, L.A.1
  • 19
    • 0032564469 scopus 로고    scopus 로고
    • Dnaend-joining catalyzed by human cell-free extracts
    • Baumann, P., and West, S. C. (1998)DNAend-joining catalyzed by human cell-free extracts. Proc. Natl. Acad. Sci. U.S.A. 95, 14066-14070
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 14066-14070
    • Baumann, P.1    West, S.C.2
  • 20
    • 0034664805 scopus 로고    scopus 로고
    • Binding of inositol phosphate to dna-pk and stimulation of double-strand break repair
    • Hanakahi, L. A., Bartlet-Jones, M., Chappell, C., Pappin, D., and West, S. C. (2000) Binding of inositol phosphate to DNA-PK and stimulation of double-strand break repair. Cell 102, 721-729
    • (2000) Cell , vol.102 , pp. 721-729
    • Hanakahi, L.A.1    Bartlet-Jones, M.2    Chappell, C.3    Pappin, D.4    West, S.C.5
  • 21
    • 55249085426 scopus 로고    scopus 로고
    • Evidence for an inositol hexakisphosphate-dependent role for ku in mammalian nonhomologous end joining that is independent of its role in the dna-dependent protein kinase
    • Cheung, J. C., Salerno, B., and Hanakahi, L. A. (2008) Evidence for an inositol hexakisphosphate-dependent role for Ku in mammalian nonhomologous end joining that is independent of its role in the DNA-dependent protein kinase. Nucleic Acids Res. 36, 5713-5726
    • (2008) Nucleic Acids Res. , vol.36 , pp. 5713-5726
    • Cheung, J.C.1    Salerno, B.2    Hanakahi, L.A.3
  • 22
    • 38049092084 scopus 로고    scopus 로고
    • Smallscale extracts for the study of nucleotide excision repair and non-homologous end joining
    • Smeaton, M. B., Miller, P. S., Ketner, G., and Hanakahi, L. A. (2007) Smallscale extracts for the study of nucleotide excision repair and non-homologous end joining. Nucleic Acids Res. 35, e152
    • (2007) Nucleic Acids Res. , vol.35
    • Smeaton, M.B.1    Miller, P.S.2    Ketner, G.3    Hanakahi, L.A.4
  • 26
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand dna break repair by the nonhomologous dna end-joining pathway
    • Lieber, M. R. (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu. Rev. Biochem. 79, 181-211
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 27
    • 0036261707 scopus 로고    scopus 로고
    • Sensing and repairing dna double-strand breaks
    • Jackson, S. P. (2002) Sensing and repairing DNA double-strand breaks. Carcinogenesis 23, 687-696
    • (2002) Carcinogenesis , vol.23 , pp. 687-696
    • Jackson, S.P.1
  • 28
    • 84865364870 scopus 로고    scopus 로고
    • Playing the end game: Dna double-strand break repair pathway choice
    • Chapman, J. R., Taylor, M. R., and Boulton, S. J. (2012) Playing the end game: DNA double-strand break repair pathway choice. Mol. Cell 47, 497-510
    • (2012) Mol. Cell , vol.47 , pp. 497-510
    • Chapman, J.R.1    Taylor, M.R.2    Boulton, S.J.3
  • 29
    • 0042839614 scopus 로고    scopus 로고
    • Mechanism and regulation of human non-homologous dna end-joining
    • Lieber, M. R., Ma, Y., Pannicke, U., and Schwarz, K. (2003) Mechanism and regulation of human non-homologous DNA end-joining. Nat. Rev. Mol. Cell Biol. 4, 712-720
    • (2003) Nat. Rev. Mol. Cell Biol. , vol.4 , pp. 712-720
    • Lieber, M.R.1    Ma, Y.2    Pannicke, U.3    Schwarz, K.4
  • 30
    • 0035833552 scopus 로고    scopus 로고
    • Structure of the ku heterodimer bound to dna and its implications for double-strand break repair
    • Walker, J. R., Corpina, R. A., and Goldberg, J. (2001) Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair. Nature 412, 607-614
    • (2001) Nature , vol.412 , pp. 607-614
    • Walker, J.R.1    Corpina, R.A.2    Goldberg, J.3
  • 31
    • 0033560796 scopus 로고    scopus 로고
    • The dna-dependent protein kinase
    • Smith, G. C., and Jackson, S. P. (1999) The DNA-dependent protein kinase. Genes Dev. 13, 916-934
    • (1999) Genes Dev. , vol.13 , pp. 916-934
    • Smith, G.C.1    Jackson, S.P.2
  • 32
    • 0042830859 scopus 로고    scopus 로고
    • Nucleocytoplasmic transport: Taking an inventory
    • Fried, H., and Kutay, U. (2003) Nucleocytoplasmic transport: taking an inventory. Cell. Mol. Life Sci. 60, 1659-1688
    • (2003) Cell. Mol. Life Sci. , vol.60 , pp. 1659-1688
    • Fried, H.1    Kutay, U.2
  • 33
    • 0035150530 scopus 로고    scopus 로고
    • Nuclear localization of ku antigen is promoted independently by basic motifs in the ku70 and ku80 subunits
    • Bertinato, J., Schild-Poulter, C., and Haché, R. J. (2001) Nuclear localization of Ku antigen is promoted independently by basic motifs in the Ku70 and Ku80 subunits. J. Cell Sci. 114, 89-99
    • (2001) J. Cell Sci. , vol.114 , pp. 89-99
    • Bertinato, J.1    Schild-Poulter, C.2    Haché, R.J.3
  • 35
    • 84881437733 scopus 로고    scopus 로고
    • The transience of transient overexpression
    • Gibson, T. J., Seiler, M., and Veitia, R. A. (2013) The transience of transient overexpression. Nat. Methods 10, 715-721
    • (2013) Nat. Methods , vol.10 , pp. 715-721
    • Gibson, T.J.1    Seiler, M.2    Veitia, R.A.3
  • 36
    • 0035825193 scopus 로고    scopus 로고
    • Differential localization of rho gtpases in live cells: Regulation by hypervariable regions and rhogdi binding
    • Michaelson, D., Silletti, J., Murphy, G., D'Eustachio, P., Rush, M., and Philips, M. R. (2001) Differential localization of Rho GTPases in live cells: regulation by hypervariable regions and RhoGDI binding. J. Cell Biol. 152, 111-126
    • (2001) J. Cell Biol. , vol.152 , pp. 111-126
    • Michaelson, D.1    Silletti, J.2    Murphy, G.3    D'Eustachio, P.4    Rush, M.5    Philips, M.R.6
  • 37
    • 80054698886 scopus 로고    scopus 로고
    • Effect of the inositol polyphosphate insp6 on dnapk-dependent phosphorylation
    • Hanakahi, L. (2011) Effect of the inositol polyphosphate InsP6 on DNAPK-dependent phosphorylation. Mol. Cancer Res. 9, 1366-1376
    • (2011) Mol. Cancer Res. , vol.9 , pp. 1366-1376
    • Hanakahi, L.1
  • 38
    • 3543122311 scopus 로고    scopus 로고
    • Evidence that stable retroviral transduction and cell survival following dna integration depend on components of the nonhomologous end joining repair pathway
    • Daniel, R., Greger, J. G., Katz, R. A., Taganov, K. D., Wu, X., Kappes, J. C., and Skalka, A. M. (2004) Evidence that stable retroviral transduction and cell survival following DNA integration depend on components of the nonhomologous end joining repair pathway. J. Virol. 78, 8573-8581
    • (2004) J. Virol. , vol.78 , pp. 8573-8581
    • Daniel, R.1    Greger, J.G.2    Katz, R.A.3    Taganov, K.D.4    Wu, X.5    Kappes, J.C.6    Skalka, A.M.7
  • 40
  • 41
    • 0036385935 scopus 로고    scopus 로고
    • Effect of ku80 depletion on the preintegrative steps of hiv-1 replication in human cells
    • Jeanson, L., Subra, F., Vaganay, S., Hervy, M., Marangoni, E., Bourhis, J., and Mouscadet, J. F. (2002) Effect of Ku80 depletion on the preintegrative steps of HIV-1 replication in human cells. Virology 300, 100-108
    • (2002) Virology , vol.300 , pp. 100-108
    • Jeanson, L.1    Subra, F.2    Vaganay, S.3    Hervy, M.4    Marangoni, E.5    Bourhis, J.6    Mouscadet, J.F.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.