메뉴 건너뛰기




Volumn 68, Issue 6, 2014, Pages 777-783

Deinococcus soli sp. Nov., a gamma-radiation-resistant bacterium isolated from rice field soil

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; DEINOCOCCUS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GAMMA RAYS; KOREA; MICROBIAL VIABILITY; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

EID: 84898894588     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-014-0542-7     Document Type: Article
Times cited : (25)

References (29)
  • 1
    • 0019362778 scopus 로고
    • Nomenclature for "micrococcus radiodurans" and other radiation-resistant cocci: Deinococcaceae fam. Nov. And Deinococcus gen. Nov., including five species
    • Brooks BW, Murray RGE (1981) Nomenclature for "Micrococcus radiodurans" and other radiation-resistant cocci: Deinococcaceae fam. nov. and Deinococcus gen. nov., including five species. Int J Syst Evol Microbiol 31(3):353-360
    • (1981) Int J Syst Evol Microbiol , vol.31 , Issue.3 , pp. 353-360
    • Brooks, B.W.1    Murray, R.G.E.2
  • 2
    • 0020407158 scopus 로고
    • Nonstaining (KOH) method for determination of Gram reactions of marine bacteria
    • 1:STN:280:DyaL3s%2FntlCitw%3D%3D
    • Buck JD (1982) Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44:992-993
    • (1982) Appl Environ Microbiol , vol.44 , pp. 992-993
    • Buck, J.D.1
  • 3
    • 0019490792 scopus 로고
    • Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication
    • 1:STN:280:DyaL3M3ntVWrtQ%3D%3D
    • Collins MD, Jones D (1981) Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. Microbiol Rev 45(2):316-354
    • (1981) Microbiol Rev , vol.45 , Issue.2 , pp. 316-354
    • Collins, M.D.1    Jones, D.2
  • 5
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Evol Microbiol 39:224-229
    • (1989) Int J Syst Evol Microbiol , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 6
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • 10.2307/2408678
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 7
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specified tree topology
    • 10.2307/2412116
    • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specified tree topology. Syst Zool 20(4):406-416
    • (1971) Syst Zool , vol.20 , Issue.4 , pp. 406-416
    • Fitch, W.M.1
  • 8
    • 0030435636 scopus 로고    scopus 로고
    • Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection
    • 1:CAS:528:DyaK2sXht1SisrY%3D 10.2323/jgam.42.457
    • Hiraishi A, Ueda Y, Ishihara J, Mori T (1996) Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42:457-469
    • (1996) J Gen Appl Microbiol , vol.42 , pp. 457-469
    • Hiraishi, A.1    Ueda, Y.2    Ishihara, J.3    Mori, T.4
  • 9
    • 9944230452 scopus 로고    scopus 로고
    • Deinococcus frigens sp. Nov., Deinococcus saxicola sp. Nov., and Deinococcus marmoris sp. Nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica
    • 10.1078/0723202042370008 1:CAS:528:DC%2BD2MXhtF2mtrs%3D 10.1078/0723202042370008
    • Hirsch P, Gallikowski CA, Siebert J, Peissl K, Kroppenstedt R, Schumann P, Stackebrandt E, Anderson R (2004) Deinococcus frigens sp. Nov., Deinococcus saxicola sp. Nov., and Deinococcus marmoris sp. Nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica. Syst Appl Microbiol 27(6):636-645. doi: 10.1078/0723202042370008
    • (2004) Syst Appl Microbiol , vol.27 , Issue.6 , pp. 636-645
    • Hirsch, P.1    Gallikowski, C.A.2    Siebert, J.3    Peissl, K.4    Kroppenstedt, R.5    Schumann, P.6    Stackebrandt, E.7    Anderson, R.8
  • 10
    • 55849133004 scopus 로고    scopus 로고
    • Deinococcus aquaticus sp. Nov., isolated from fresh water, and Deinococcus caeni sp. Nov., isolated from activated sludge
    • 10.1099/ijs.0.64082-0 1:CAS:528:DC%2BD1cXhtlyjtbfL 10.1099/ijs.0.64082-0
    • Im WT, Jung HM, Ten LN, Kim MK, Bora N, Goodfellow M, Lim S, Jung J, Lee ST (2008) Deinococcus aquaticus sp. Nov., isolated from fresh water, and Deinococcus caeni sp. Nov., isolated from activated sludge. Int J Syst Evol Microbiol 58:2348-2353. doi: 10.1099/ijs.0.64082-0
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2348-2353
    • Im, W.T.1    Jung, H.M.2    Ten, L.N.3    Kim, M.K.4    Bora, N.5    Goodfellow, M.6    Lim, S.7    Jung, J.8    Lee, S.T.9
  • 11
    • 58949085996 scopus 로고    scopus 로고
    • Deinococcus aquatilis sp. Nov., isolated from water
    • 10.1099/ijs.0.2008/001206-0 10.1099/ijs.0.2008/001206-0
    • Kämpfer P, Lodders N, Huber B, Falsen E, Busse HJ (2008) Deinococcus aquatilis sp. Nov., isolated from water. Int J Syst Evol Microbiol 58:2803-2806. doi: 10.1099/ijs.0.2008/001206-0
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2803-2806
    • Kämpfer, P.1    Lodders, N.2    Huber, B.3    Falsen, E.4    Busse, H.J.5
  • 12
    • 84863230041 scopus 로고    scopus 로고
    • Introducing EzTaxon-e: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
    • 10.1099/ijs.0.038075-0 1:CAS:528:DC%2BC38Xms1Wisrg%3D 10.1099/ijs.0.038075-0
    • Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716-721. doi: 10.1099/ijs.0.038075-0
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 716-721
    • Kim, O.S.1    Cho, Y.J.2    Lee, K.3    Yoon, S.H.4    Kim, M.5    Na, H.6    Park, S.C.7    Jeon, Y.S.8    Lee, J.H.9    Yi, H.10    Won, S.11    Chun, J.12
  • 13
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • 1:CAS:528:DyaL3MXmtFSktg%3D%3D 10.1007/BF01731581
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16(2):111-120
    • (1980) J Mol Evol , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 14
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • 1:CAS:528:DyaL1cXitFylt78%3D 10.1016/S0580-9517(08)70410-0
    • Komagata K, Suzuki KI (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161-205
    • (1987) Methods Microbiol , vol.19 , pp. 161-205
    • Komagata, K.1    Suzuki, K.I.2
  • 15
    • 0023752959 scopus 로고
    • Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum
    • 10.1099/00207713-38-4-358 1:CAS:528:DyaL1MXlsVWqsQ%3D%3D
    • Kuykendall LD, Roy MA, O'Neill JJ, Devine TE (1988) Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Evol Microbiol 38:358-361. doi: 10.1099/00207713-38-4-358
    • (1988) Int J Syst Evol Microbiol , vol.38 , pp. 358-361
    • Kuykendall, L.D.1    Roy, M.A.2    O'Neill, J.J.3    Devine, T.E.4
  • 16
    • 33646186936 scopus 로고    scopus 로고
    • Deinococcus ficus sp. Nov., isolated from the rhizosphere of Ficus religiosa L.
    • 10.1099/ijs.0.64007-0 1:CAS:528:DC%2BD28XkvFGns78%3D 10.1099/ijs.0.64007- 0
    • Lai WA, Kämpfer P, Arun AB, Shen FT, Huber B, Rekha PD, Young CC (2006) Deinococcus ficus sp. Nov., isolated from the rhizosphere of Ficus religiosa L. Int J Syst Evol Microbiol 56:787-791. doi: 10.1099/ijs.0.64007-0
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 787-791
    • Lai, W.A.1    Kämpfer, P.2    Arun, A.B.3    Shen, F.T.4    Huber, B.5    Rekha, P.D.6    Young, C.C.7
  • 17
    • 0021182575 scopus 로고
    • An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids
    • 10.1016/0167-7012(84)90018-6 1:CAS:528:DyaL2cXlt1Kitr4%3D 10.1016/0167-7012(84)90018-6
    • Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2(5):233-241. doi: 10.1016/0167-7012(84)90018-6
    • (1984) J Microbiol Methods , vol.2 , Issue.5 , pp. 233-241
    • Minnikin, D.E.1    O'Donnell, A.G.2    Goodfellow, M.3    Alderson, G.4    Athalye, M.5    Schaal, A.6    Parlett, J.H.7
  • 18
    • 0030950157 scopus 로고    scopus 로고
    • Phylogenetic diversity of the Deinococci as determined by 16S ribosomal DNA sequence comparison
    • 1:CAS:528:DyaK2sXislGit7s%3D
    • Rainey FA, Nobre MF, Schumann P, Stackebrandt E, da Costa MS (1997) Phylogenetic diversity of the Deinococci as determined by 16S ribosomal DNA sequence comparison. Int J Syst Evol Microbiol 47(2):510-514
    • (1997) Int J Syst Evol Microbiol , vol.47 , Issue.2 , pp. 510-514
    • Rainey, F.A.1    Nobre, M.F.2    Schumann, P.3    Stackebrandt, E.4    Da Costa, M.S.5
  • 19
    • 20444383583 scopus 로고    scopus 로고
    • Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample
    • 10.1128/AEM.71.9.5225-5235.2005 1:CAS:528:DC%2BD2MXhtVahtr7M 10.1128/AEM.71.9.5225-5235.2005
    • Rainey FA, Ray K, Ferreira M, Gatz BZ, Nobre MF, Bagaley D, Rash BA, Park MJ, Earl AM, Shank NC, Small AM, Henk MC, Battista JR, Kämpfer P, da Costa MS (2005) Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample. Appl Environ Microbiol 71(9):5225-5235. doi: 10.1128/AEM.71.9.5225-5235.2005
    • (2005) Appl Environ Microbiol , vol.71 , Issue.9 , pp. 5225-5235
    • Rainey, F.A.1    Ray, K.2    Ferreira, M.3    Gatz, B.Z.4    Nobre, M.F.5    Bagaley, D.6    Rash, B.A.7    Park, M.J.8    Earl, A.M.9    Shank, N.C.10    Small, A.M.11    Henk, M.C.12    Battista, J.R.13    Kämpfer, P.14    Da Costa, M.S.15
  • 20
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 1:STN:280:DyaL1c7ovFSjsA%3D%3D
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406-425
    • (1987) Mol Biol Evol , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 21
    • 84861889171 scopus 로고    scopus 로고
    • Deinococcus daejeonensis sp. Nov., isolated from sludge in a sewage disposal plant
    • 10.1099/ijs.0.033316-0 1:CAS:528:DC%2BC38XhtF2jsL%2FE 10.1099/ijs.0.033316-0
    • Srinivasan S, Kim MK, Lim S, Joe M, Lee M (2012) Deinococcus daejeonensis sp. Nov., isolated from sludge in a sewage disposal plant. Int J Syst Evol Microbiol 62:1265-1270. doi: 10.1099/ijs.0.033316-0
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 1265-1270
    • Srinivasan, S.1    Kim, M.K.2    Lim, S.3    Joe, M.4    Lee, M.5
  • 22
    • 84870895955 scopus 로고    scopus 로고
    • Deinococcus humi sp. Nov., isolated from soil
    • 10.1099/ijs.0.037234-0 1:CAS:528:DC%2BC3sXjs1OrtLs%3D 10.1099/ijs.0.037234-0
    • Srinivasan S, Lee JJ, Lim S, Joe M, Kim MK (2012) Deinococcus humi sp. Nov., isolated from soil. Int J Syst Evol Microbiol 62:2844-2850. doi: 10.1099/ijs.0.037234-0
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 2844-2850
    • Srinivasan, S.1    Lee, J.J.2    Lim, S.3    Joe, M.4    Kim, M.K.5
  • 23
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • 10.1099/00207713-44-4-846 1:CAS:528:DyaK2MXitFCnsb4%3D
    • Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Evol Microbiol 44:846-849. doi: 10.1099/00207713-44- 4-846
    • (1994) Int J Syst Evol Microbiol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 24
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K 10.1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-2739. doi: 10.1093/molbev/msr121
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 25
    • 0021715576 scopus 로고
    • Determination of DNA base composition by reversed-phase high-performance liquid chromatography
    • 1:CAS:528:DyaL2MXitVGktg%3D%3D 10.1111/j.1574-6968.1984.tb01388.x
    • Tamaoka J, Komagata K (1984) Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125-128
    • (1984) FEMS Microbiol Lett , vol.25 , pp. 125-128
    • Tamaoka, J.1    Komagata, K.2
  • 26
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25(24):4876-4882. doi: 10.1093/nar/25.24.4876
    • (1997) Nucleic Acids Res , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 29
    • 77952710648 scopus 로고    scopus 로고
    • Deinococcus aerolatus sp. Nov. And Deinococcus aerophilus sp. Nov., isolated from air samples
    • 10.1099/ijs.0.016030-0 1:CAS:528:DC%2BC3cXnsVenu7c%3D 10.1099/ijs.0.016030-0
    • Yoo SH, Weon HY, Kim SJ, Kim YS, Kim BY, Kwon SW (2010) Deinococcus aerolatus sp. Nov. And Deinococcus aerophilus sp. Nov., isolated from air samples. Int J Syst Evol Microbiol 60:1191-1195. doi: 10.1099/ijs.0.016030-0
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1191-1195
    • Yoo, S.H.1    Weon, H.Y.2    Kim, S.J.3    Kim, Y.S.4    Kim, B.Y.5    Kwon, S.W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.