Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental antarctica

Systematic and Applied Microbiology

Volumn 27, Issue 6, 2004, Pages 636-645

  Hirsch, Peter ^a   Gallikowski, Claudia A ^a   Siebert, Jörg ^a   Peissl, Klaus ^a   Kroppenstedt, Reiner ^b   Schumann, Peter ^b   Stackebrandt, Erko ^b   Anderson, Robert ^c  

^a UNIVERSITY OF KIEL   (Germany)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^c DALHOUSIE UNIVERSITY   (Canada)

Author keywords

Antarctic endoliths and soils; Deinococcus; Draught tolerance; UV resistance

Indexed keywords

BACTERIAL RNA; FATTY ACID; LIPID; ORNITHINE; RNA 16S; SODIUM CHLORIDE;

ANAEROBIC BACTERIUM; ANTARCTICA; ARTICLE; BACTERIAL CELL WALL; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; DEINOCOCCUS FRIGENS; DEINOCOCCUS MARMORIS; DEINOCOCCUS SAXICOLA; DNA DNA HYBRIDIZATION; DNA SEQUENCE; GENE SEQUENCE; GENETIC SIMILARITY; GEOGRAPHIC ORIGIN; GEOGRAPHICAL VARIATION (SPECIES); GRAM POSITIVE BACTERIUM; LIPID ANALYSIS; MICROBIAL ACTIVITY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; RADIOSENSITIVITY; ROCK; SALT TOLERANCE; SEQUENCE HOMOLOGY; SOIL ANALYSIS; STRAIN IDENTIFICATION; ULTRAVIOLET RADIATION;

BACTERIA (MICROORGANISMS); DEINOCOCCUS; DEINOCOCCUS FRIGENS; DEINOCOCCUS MARMORIS; DEINOCOCCUS RADIODURANS; DEINOCOCCUS RADIOPUGNANS; DEINOCOCCUS SAXICOLA; POSIBACTERIA; SAXICOLA;

EID: 9944230452     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/0723202042370008     Document Type: Article

References (56)

1. Anderson, R., Hansen, K.: Structure of a novel phosphoglycolipid from Deinococcus radiodurans. J. Biol. Chem. 260, 12219-12223 (1985).
2. Anderson, D. G., McKagy, L. L.: Simple and rapid method for isolating large plasmid DNA from lactic streptococci. Appl. Environm. Microbiol. 46, 549-552 (1983).
3. Bartels, C.: Untersuchungen zum Vorkommen von Restriktionsendonucleasen der Klasse II bei antarktischen und morphologisch "ungewö hnlichen" Bakterien sowie zur ökologischen Bedeutung von Restriktionsenzymen. Ph.D. thesis, University of Kiel, Germany, 108 pp. (1993).
4. VP. In: Bergey's Manual of Systematic Bacteriology, 2. edition, vol. 1 (D. R. Boone & R. W. Castenholz, eds.), pp. 395-403 (2001).
5. Birnboim, H. C., Doly, J.: A rapid alkaline extraction procedure for screening recombinant DNA. Nucleic Acid Res. 6, 1513-1523 (1979).
6. Brooks, B. W., Murray, R. G. E.: Nomenclature for "Micrococcus radiodurans" and other radiation-resistant cocci: Deinococcaceae fam. nov. and Oeinococcus gen. nov. including five species. Int. J. Syst. Bacteriol. 31, 353-360 (1981).
7. Cohen-Bazire, G., Sistrom, W. R., Stanier, R. Y.: Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J. Cell. Comp. Physiol. 49, 25-68 (1957).
8. Collins, M. D., Pirouz, T., Goodfellow, M., Minnikin, D. E.: Distribution of menaquinones in actinomycetes and corynebacteria. J. Gen. Microbiol. 100, 221-230 (1977).
9. Counsell, T. J., Murray, R. G. E.: Polar lipid profiles of the genus Deinococcus. Int. J. Syst. Bacteriol. 36, 202-206 (1986).
10. DeSoete, G.: A least squares algorithm for fitting additive trees to proximity data. Psychometrika 48, 621-626 (1983).
11. Embley, T. H., O'Donnell, A. G., Wait, R., Rostron, J.: Lipid and cell wall amino acid composition in the classification of members of the genus Deinococcus. Syst. Appl. Microbiol. 10, 20-27 (1987).
12. Ernst, B., Mennigmann, H. D.: Photobiologie von Deinococcus radiodurans unter Vakuum und bei verschiedenen Feuchten. Forum Mikrobiologie 12, 1-2 (1989).
13. Felsenstein, J.: PHYLIP (phylogenetic inference package) version 3.5.1. Department of Genetics, Univ. Washington, Seattle, USA (1993).
14. Ferreira, A. C., Nobre, M. F., Rainey, F. A., Silva, M. T., Wait, R., Burghardt, J., Chung, A. P., Da Costa, M. S.: Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. Int. J. Syst. Bacteriol. 47, 939-947 (1997).
15. Friedmann, E. I.: Endolithic microorganisms in the Antarctic cold desert. Science 215, 68-74 (1982).
16. Frühling, A., Schumann, P., Hippe, H., Straubler, B., Stackebrandt, E.: Exiguobacterium undae sp. nov., and Exiguobacterium antarcticum sp. nov. Int. J. Syst. Evolut. Microbiol. 52, 1171-1176 (2002).
17. Gallikowski, C. A.: Charakterisierung antarktischer Bodenmikroorganismen unter besonderer Berücksichtigung ökophysiologischer Eigenschaften von fünfzehn ausgewählten Reinkulturen. Ph. D. thesis University of Kiel, Germany, 92 pp., Anhang 48 pp. (1989).
18. Groth, I., Schumann, P., Weiss, N., Martin, K., Rainey, F. A.: Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int. J. Syst. Bacteriol. 46, 234-239 (1996).
19. Harper, J. J., Davis, G. H. G.: Two-dimensional thin-layer chromatography for amino acid analysis of bacterial cell walls. Int. J. Syst. Bacteriol. 29, 56-58 (1979).
20. Hirsch, P., Hoffmann, B., Gallikowski, C. A., Mevs, U., Siebert, J., Sittig, M.: Diversity and identification of heterotrophs from antarctic rocks of the McMurdo Dry Valleys (Ross Desert). Polarforsch. 58, 261-269 (1988).
21. Hirsch, P., Ludwig, W., Hethke, C., Sittig, M., Hoffmann, B., Gallikowski, C. A.: Hymenobacter roseosalivarius gen. nov., sp. nov. from continental antarctic soils and sandstone: bacteria of the Cytophaga / flavobacterium / Bacteroides line of phylogenetic descent. Syst. Appl. Microbiol. 21, 374-383 (1998).
22. Hirsch, P., Mevs, U., Kroppenstedt, R. M., Schumann, P., Stackebrandt, E.: Cryptoendolithic actinomycetes from antarctic sandstone rock samples: Micromonospora endolithica sp. nov. and two isolates related to Micromonospora coerulea Jensen 1932. Syst. Appl. Microbiol. 27, 166-174 (2004).
23. Holst, U.: Versuche zum Aufschluß bzw. zur Lyse von hyphen- und knospentragenden Bakterien durch Mikroorganismen, Enzyme und andere Methoden. M.S. thesis, University of Kiel (in German) (1985).
24. Horowitz, N. H., Cameron, R. E., Hubbard, J. S.: Microbiology of the dry valleys of Antarctica. Science 176, 242-245 (1972).
25. Huß, V. A. R., Festl, H., Schleifer, K. H.: Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst. Appl. Microbiol. 4, 184-192 (1983).
26. Huang, Y., Anderson, R.: Structure of a novel glucosamine-containing phosphoglycolipid from Deinococcus radiodurans. J. Biol. Chem. 264, 18667-18672 (1989).
27. Jahnke, K. D.: BASIC computer program for evaluation of spectroscopic DNA renaturation data from GILFORD SYSTEM 2600 spectrophotometer on a PC/XT/AT type personal computer. J. Microbiol. Methods 15, 61-73 (1992).
28. Jukes, T. H., Cantor, C. R.: Evolution of protein molcules. In: Mammalian Protein Metabolism, pp. 21-132. Editor: H.N. Munro. New York, Academic Press (1969).
29. Kroppenstedt, R. M.: Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Chemical Methods in Bacterial Systematics. (M. Goodfellow and D. E. Minnikin, eds.). No. 20 SAB Technical Series, Academic Press, 173-199 (1985).
30. Kuykendall, L. D., Roy, M. A., O'Neill, J. J., Devine, T. E.: Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int. J. Syst. Bacteriol. 38, 358-361 (1988).
31. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Braker, G., Hirsch, P.: Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. Int. J. Syst. Bacteriol. 48, 1363-1372 (1998).
32. Lockhead, A. G., Burton, M. O.: Qualitative studies of soil microorganisms. XIV. Specific vitamin requirements of the predominant bacterial flora. Canad. J. Microbiol. 3, 35-42 (1957).
33. Maidak, B. L., Cole, J. R., Lilburn, T. G., Parker jr., C. T., Saxman, P. R., Stredwick, J. M., Garrity, G. M., Li, B., Olsen, G. J., Pramanik, S., Schmidt, T. M., Tiedje, J. M.: The RDP (Ribosomal Database Project) continues. Nucl. Acids Res. 28, 173-174 (2000).
34. Makay, M. W., Al-Bakri, G. H., Moseley, B. E. B.: The plasmids of Deinococcus spp. and the cloning and restriction mapping of the D. radiophilus plasmid pUE1. Arch. Microbiol. 141, 91-94 (1985).
35. Mandel, M., Igambi, L., Bergendahl, J., Donson, Jr., Scheltgen, E.: Correlation of melting temperature and caesium chloride buoyant density of bacterial desoxyribonucleic acid. J. Bacteriol. 101, 333-338 (1970).
36. Marmur, J.: A procedure for the isolation of deoxyribonnucleic acid from microorganisms. J. Mol. Biol. 3, 208-218 (1961).
37. Marmur, J., Doly, P.: Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5, 109-118 (1962).
38. Masters, C. I., Murray, R. G. E., Moseley, B. E. B., Minton, K. W.: DNA polymorphisms in new isolates of Deinococcus radiopugnans. J. Gen. Microbiol. 137, 1459-1469 (1991).
39. Mattimore, V., Battista, J. R.: Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J. Bacteriol. 178, 633-637 (1996).
40. Mevs, U., Stackebrandt, E., Schumann, P., Gallikowski, C. A., Hirsch, P.: Modestobacter multiseptatus gen. nov., sp. nov., a budding actinomycete from soils of the Asgard Range (Transantarctic Mountains). Int. J. Syst. Evolut. Microbiol. 50, 337-346 (2000).
41. Miller, L. T.: A single derivatization method for bacterial fatty acid methyl esters including hydroxy acids. J. Clin. Microbiol. 16, 584-586 (1982).
42. Murray, R. G. E.: The biology and ecology of the Deinococcaceae. In: Proceed. IV. Int. Sympos. Microb. Ecol. (H. Megusar, ed.), pp. 153-158 (1986).
43. VP. In Bergey's Manual of Systematic Bacteriology (P. H. A. Sneath, N. S. Mair, M. E. Sharpe, J. G. Holt, eds.) Vol. 2, Baltimore, Williams & Wilkins, pp. 1035-1043 (1986).
44. Oyaizu, H., Stackebrandt, E., Schleifer, K. H., Ludwig, W., Pohla, H., Ito, H., Hirata, A., Oyaizu, Y., Komagata, K.: A radiation-resistant rod-shaped bacterium, Deinobacter grandis gen. nov., sp. nov. with peptidoglycan containing ornithine. Int. J. Syst. Bacteriol. 37, 62-67 (1987).
45. Peissl, K.: Isolierung und Charakterisierung von Plasmiden aus antarktischen endolithischen Bakterien. M.S. thesis, Univ. of Kiel, Germany (80 pp) (1991).
46. Rainey, F. A., Nobre, M. F., Schumann, P., Stackebrandt, E., DaCosta, M. S.: Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. Int. J. Syst. Bacteriol. 47, 510-514 (1997).
47. Schleifer, K. H., Kandler, O.: Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Reviews 36, 407-477 (1972).
48. Schumann, P., Prauser, H., Rainey, F. A., Stackebrandt, E., Hirsch, P.: Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone. Int. J. Syst. Bacteriol. 47, 278-283 (1997).
49. Siebert, J.: Charakterisierung antarktischer endolithischer Bakterien. M.S. thesis University of Kiel, Germany, 108 pp. (1986).
50. Siebert, J.: Synökologische und ernährungsphysiologische Untersuchungen an antarktischen endolithischen Mikroorganismen und die chemische Analyse von Nährstoffen im antarktischen Sandstein. Ph. D. thesis, Univ. of Kiel, Germany, 120 pp. (1991).
51. Skerman, V. B. D.: A guide to the identification of genera of baceria, 2nd. ed. Baltimore, The Williams & Wilkins Comp. (1967).
52. Smibert, R. M., Krieg, N. R.: General characterization. In: Manual of Methods for General Bacteriology, pp. 409-433. Washington, DC, American Society for Microbiology (1981).
53. Staley, J. T.: Prosthecomicrobium and Ancalomicrobium, new prosthecate fresh water bacteria. J. Bacteriol. 95, 1922-1948 (1968).
54. Suresh, K, Reddy, G. S. N., Sengupta, S., Shivaji, S.: Deinococcus indicus sp. nov., an arsenic resistant bacterium from an aquifer in West Bengal, India. Int. J. Syst. Evolut. Microbiol. 56, 457-461 (2004).
55. Thompson, B. G., Anderson, R., Murray, R. G. E. Unusual polar lipids of Micrococcus radiodurans strain Sark. Canad. J. Microbiol. 26, 1408-1411 (1980).
56. Whitehead, P. R., Brown, N. L.: A simple and rapid method for screening bacteria for type II restriction endonucleases: Enzymes in Aphanothece halophytica. Arch. Microbiol. 141, 70-74 (1985).