-
1
-
-
0025761269
-
Intraspecific variation in population gene diversity and effective population-size correlates with the mating system in plants
-
Schoen, D.J.; Brown, A.H.D. Intraspecific variation in population gene diversity and effective population-size correlates with the mating system in plants. Proc. Natl. Acad. Sci. USA 1991, 88, 4494-4497.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 4494-4497
-
-
Schoen, D.J.1
Brown, A.H.D.2
-
2
-
-
77957007911
-
Cohort-structured tree populations
-
Jansson, S.; Ingvarsson, P.K. Cohort-structured tree populations. Heredity 2010, 105, 331-332.
-
(2010)
Heredity
, vol.105
, pp. 331-332
-
-
Jansson, S.1
Ingvarsson, P.K.2
-
3
-
-
34547610312
-
Food and Agriulture Organization of the United Nations.
-
Report of the 14th Regular Session of the Commission on Genetic Resources for Food and Agriculture. Available online: (accessed on 16 February 2014).
-
Food and Agriulture Organization of the United Nations. Report of the 14th Regular Session of the Commission on Genetic Resources for Food and Agriculture. Available online: http://www.fao.org/docrep/meeting/028/mg468e.pdf (accessed on 16 February 2014).
-
-
-
-
4
-
-
0004104878
-
Biotechnology in Forest Tree Improvement: With Special Reference to Developing Countries
-
1st ed.; Food and Agriculture Organization of the United Nations: Rome, Italy
-
Haines, R. Biotechnology in Forest Tree Improvement: With Special Reference to Developing Countries, 1st ed.; Food and Agriculture Organization of the United Nations: Rome, Italy, 1994; p. 230.
-
(1994)
, pp. 230
-
-
Haines, R.1
-
5
-
-
84898872060
-
The Finnish project for genetic mapping and its applications in breeding, biotechnology and research of white birch.
-
Proceedings of the Sixth Meeting of the International Conifer Biotechnology Working Group, Raleigh, NC, USA, 23 April
-
Lapinjoki, S.; Tammisola, J.; Kauppinen, V.; Wright, A.; Vihera-Aarnie, A.; Hagqvist, R.; Sundquist, J.; Martimo, T. The Finnish project for genetic mapping and its applications in breeding, biotechnology and research of white birch. In Proceedings of the Sixth Meeting of the International Conifer Biotechnology Working Group, Raleigh, NC, USA, 23 April 1992.
-
(1992)
-
-
Lapinjoki, S.1
Tammisola, J.2
Kauppinen, V.3
Wright, A.4
Vihera-Aarnie, A.5
Hagqvist, R.6
Sundquist, J.7
Martimo, T.8
-
6
-
-
0001659812
-
Limitations of molecular-marker-aided selection in forest tree breeding
-
Strauss, S.H.; Lande, R.; Namkoong, G. Limitations of molecular-marker-aided selection in forest tree breeding. Can. J. Forest Res. 1992, 22, 1050-1061.
-
(1992)
Can. J. Forest Res.
, vol.22
, pp. 1050-1061
-
-
Strauss, S.H.1
Lande, R.2
Namkoong, G.3
-
8
-
-
84857384716
-
Genomic selection for growth and wood quality in Eucalyptus: Capturing the missing heritability and accelerating breeding for complex traits in forest trees
-
Resende, M.D.V.; Resende, M.F.R., Jr.; Sansaloni, C.P.; Petroli, C.D.; Missiaggia, A.A.; Aguiar, A.M.; Abad, J.M.; Takahashi, E.K.; Rosado, A.M.; Faria, D.A.; et al. Genomic selection for growth and wood quality in Eucalyptus: Capturing the missing heritability and accelerating breeding for complex traits in forest trees. New Phytol. 2012, 194, 116-128.
-
(2012)
New Phytol.
, vol.194
, pp. 116-128
-
-
Resende, M.D.V.1
Resende Jr., M.F.R.2
Sansaloni, C.P.3
Petroli, C.D.4
Missiaggia, A.A.5
Aguiar, A.M.6
Abad, J.M.7
Takahashi, E.K.8
Rosado, A.M.9
Faria, D.A.10
-
9
-
-
0001077387
-
Population studies in predominantly self-pollinated species, 1. Evidence for heterozygote advantage in a closed population of barley.
-
Jain, S.K.; Allard, R.W. Population studies in predominantly self-pollinated species, 1. Evidence for heterozygote advantage in a closed population of barley. Proc. Natl. Acad. Sci. USA 1960, 46, 1371-1377.
-
(1960)
Proc. Natl. Acad. Sci. USA
, vol.46
, pp. 1371-1377
-
-
Jain, S.K.1
Allard, R.W.2
-
10
-
-
0001097984
-
Isozymes, plant population genetic structure and genetic conservation
-
Brown, A.H.D. Isozymes, plant population genetic structure and genetic conservation. Theor. Appl. Genet. 1978, 52, 145-157.
-
(1978)
Theor. Appl. Genet.
, vol.52
, pp. 145-157
-
-
Brown, A.H.D.1
-
12
-
-
3543036490
-
Enzyme polymorphism in plant-populations
-
Brown, A.H.D. Enzyme polymorphism in plant-populations. Theor. Popul. Biol. 1979, 15, 1-42.
-
(1979)
Theor. Popul. Biol.
, vol.15
, pp. 1-42
-
-
Brown, A.H.D.1
-
13
-
-
0021549462
-
A Comparative-study of floral and electrophoretic variation with life-history variation in Limnanthes-alba (Limnanthaceae)
-
Ritland, K.; Jain, S. A Comparative-study of floral and electrophoretic variation with life-history variation in Limnanthes-alba (Limnanthaceae). Oecologia 1984, 63, 243-251.
-
(1984)
Oecologia
, vol.63
, pp. 243-251
-
-
Ritland, K.1
Jain, S.2
-
14
-
-
33744817677
-
Isozyme variation and the conservation genetics of Garry oak
-
Ritland, K.; Meagher, L.D.; Edwards, D.G.W.; El-Kassaby, Y.A. Isozyme variation and the conservation genetics of Garry oak. Can. J. Bot. 2005, 83, 1478-1487.
-
(2005)
Can. J. Bot.
, vol.83
, pp. 1478-1487
-
-
Ritland, K.1
Meagher, L.D.2
Edwards, D.G.W.3
El-Kassaby, Y.A.4
-
15
-
-
0030861163
-
Genetic diversity and spatial structure within a natural stand of a tropical forest tree species, Carapa procera (Meliaceae), in French Guiana
-
Doligez, A.; Joly, H.I. Genetic diversity and spatial structure within a natural stand of a tropical forest tree species, Carapa procera (Meliaceae), in French Guiana. Heredity 1997, 79, 72-82.
-
(1997)
Heredity
, vol.79
, pp. 72-82
-
-
Doligez, A.1
Joly, H.I.2
-
16
-
-
0030475856
-
Impact of selection and breeding on the genetic diversity in Douglas-fir
-
El-Kassaby, Y.; Ritland, K. Impact of selection and breeding on the genetic diversity in Douglas-fir. Biodivers. Conserv. 1996, 5, 795-813.
-
(1996)
Biodivers. Conserv.
, vol.5
, pp. 795-813
-
-
El-Kassaby, Y.1
Ritland, K.2
-
17
-
-
0027027239
-
Domestication and genetic diversity-Should we be concerned?
-
El-Kassaby, Y.A. Domestication and genetic diversity-Should we be concerned? Forest. Chron. 1992, 68, 687-700.
-
(1992)
Forest. Chron.
, vol.68
, pp. 687-700
-
-
El-Kassaby, Y.A.1
-
18
-
-
0027975159
-
Genetic diversity in a seed production population vs. natural-populations of sitka spruce.
-
Chaisurisri, K.; El-Kassaby, Y.A. Genetic diversity in a seed production population vs. natural-populations of sitka spruce. Biodivers. Conserv. 1994, 3, 512-523.
-
(1994)
Biodivers. Conserv.
, vol.3
, pp. 512-523
-
-
Chaisurisri, K.1
El-Kassaby, Y.A.2
-
19
-
-
0000594791
-
Genetic variation within and among conifer populations: Review and evaluation of methods.
-
Fineschi, S., Malvolti, M.E., Cannata, F., Hattemer, H.H., Eds.; SPB Academic Publishing: The Hague, The Netherlands
-
El-Kassaby, Y.A. Genetic variation within and among conifer populations: Review and evaluation of methods. In Biochemical Markers in the Population Genetics of Forest Trees; Fineschi, S., Malvolti, M.E., Cannata, F., Hattemer, H.H., Eds.; SPB Academic Publishing: The Hague, The Netherlands, 1991; pp. 61-76.
-
(1991)
Biochemical Markers in the Population Genetics of Forest Trees
, pp. 61-76
-
-
El-Kassaby, Y.A.1
-
20
-
-
0019302053
-
Construction of a genetic-linkage map in man using restriction fragment length polymorphisms
-
Botstein, D.; White, R.L.; Skolnick, M.; Davis, R.W. Construction of a genetic-linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 1980, 32, 314-331.
-
(1980)
Am. J. Hum. Genet.
, vol.32
, pp. 314-331
-
-
Botstein, D.1
White, R.L.2
Skolnick, M.3
Davis, R.W.4
-
21
-
-
0000019340
-
Classifying seedlots of Picea-sitchensis and Picea-glauca in zones of introgression using restriction analysis of chloroplast DNA
-
Szmidt, A.E.; El-Kassaby, Y.A.; Sigurgeirsson, A.; Alden, T.; Lindgren, D.; Hallgren, J.E. Classifying seedlots of Picea-sitchensis and Picea-glauca in zones of introgression using restriction analysis of chloroplast DNA. Theor. Appl. Genet. 1988, 76, 841-845.
-
(1988)
Theor. Appl. Genet.
, vol.76
, pp. 841-845
-
-
Szmidt, A.E.1
El-Kassaby, Y.A.2
Sigurgeirsson, A.3
Alden, T.4
Lindgren, D.5
Hallgren, J.E.6
-
22
-
-
0034076253
-
Nuclear restriction fragment length polymorphism analysis of genetic diversity in western redcedar
-
Glaubitz, J.C.; El-Kassaby, Y.A.; Carlson, J.E. Nuclear restriction fragment length polymorphism analysis of genetic diversity in western redcedar. Can. J. Forest Res. 2000, 30, 379-389.
-
(2000)
Can. J. Forest Res.
, vol.30
, pp. 379-389
-
-
Glaubitz, J.C.1
El-Kassaby, Y.A.2
Carlson, J.E.3
-
23
-
-
0022965004
-
Specific enzymatic amplification of DNA in vitro-The polymerase chain-reaction. Cold Spring Harb.
-
Mullis, K.; Faloona, F.; Scharf, S.; Saiki, R.; Horn, G.; Erlich, H. Specific enzymatic amplification of DNA in vitro-The polymerase chain-reaction. Cold Spring Harb. Symp. Quant. Biol. 1986, 51, 263-273.
-
(1986)
Symp. Quant. Biol.
, vol.51
, pp. 263-273
-
-
Mullis, K.1
Faloona, F.2
Scharf, S.3
Saiki, R.4
Horn, G.5
Erlich, H.6
-
24
-
-
0025008570
-
DNA polymorphisms amplified by arbitrary primers are useful as genetic-markers
-
Williams, J.G.K.; Kubelik, A.R.; Livak, K.J.; Rafalski, J.A.; Tingey, S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic-markers. Nucleic Acids Res. 1990, 18, 6531-6535.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6531-6535
-
-
Williams, J.G.K.1
Kubelik, A.R.2
Livak, K.J.3
Rafalski, J.A.4
Tingey, S.V.5
-
25
-
-
0028834605
-
AFLP-A new technique for DNA-fingerprinting
-
Vos, P.; Hogers, R.; Bleeker, M.; Reijans, M.; Vandelee, T.; Hornes, M.; Frijters, A.; Pot, J.; Peleman, J.; Kuiper, M. AFLP-A new technique for DNA-fingerprinting. Nucleic Acids Res. 1995, 23, 4407-4414.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4407-4414
-
-
Vos, P.1
Hogers, R.2
Bleeker, M.3
Reijans, M.4
Vandelee, T.5
Hornes, M.6
Frijters, A.7
Pot, J.8
Peleman, J.9
Kuiper, M.10
-
26
-
-
0028316648
-
Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain-reaction amplification
-
Zietkiewicz, E.; Rafalski, A.; Labuda, D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain-reaction amplification. Genomics 1994, 20, 176-183.
-
(1994)
Genomics
, vol.20
, pp. 176-183
-
-
Zietkiewicz, E.1
Rafalski, A.2
Labuda, D.3
-
27
-
-
0036008761
-
Applications of single nucleotide polymorphisms in crop genetics
-
Rafalski, A. Applications of single nucleotide polymorphisms in crop genetics. Curr. Opin. Plant Biol. 2002, 5, 94-100.
-
(2002)
Curr. Opin. Plant Biol.
, vol.5
, pp. 94-100
-
-
Rafalski, A.1
-
28
-
-
0036008763
-
Plant molecular diversity and applications to genomics
-
Buckler, E.S.; Thornsberry, J.M. Plant molecular diversity and applications to genomics. Curr. Opin. Plant Biol. 2002, 5, 107-111.
-
(2002)
Curr. Opin. Plant Biol.
, vol.5
, pp. 107-111
-
-
Buckler, E.S.1
Thornsberry, J.M.2
-
29
-
-
79952451853
-
Assessing plant genetic diversity by molecular tools
-
Mondini, L.; Noorani, A.; Pagnotta, M. Assessing plant genetic diversity by molecular tools. Diversity 2009, 1, 19-35.
-
(2009)
Diversity
, vol.1
, pp. 19-35
-
-
Mondini, L.1
Noorani, A.2
Pagnotta, M.3
-
30
-
-
84891603903
-
DNA fingerprinting in botany: Past, present, future
-
Nybom, H.; Weising, K.; Rotter, B. DNA fingerprinting in botany: Past, present, future. Investig. Genet. 2014, 5, 1-35.
-
(2014)
Investig. Genet.
, vol.5
, pp. 1-35
-
-
Nybom, H.1
Weising, K.2
Rotter, B.3
-
31
-
-
0032189801
-
An evaluation of RAPD fragment reproducibility and nature
-
Perez, T.; Albornoz, J.; Dominguez, A. An evaluation of RAPD fragment reproducibility and nature. Mol. Ecol. 1998, 7, 1347-1357.
-
(1998)
Mol. Ecol.
, vol.7
, pp. 1347-1357
-
-
Perez, T.1
Albornoz, J.2
Dominguez, A.3
-
32
-
-
0027430702
-
Incidence and origin of "null" alleles in the (AC)n microsatellite markers
-
Callen, D.F.; Thompson, A.D.; Shen, Y.; Phillips, H.A.; Richards, R.I.; Mulley, J.C.; Sutherland, G.R. Incidence and origin of "null" alleles in the (AC)n microsatellite markers. Am. J. Hum. Genet. 1993, 52, 922-927.
-
(1993)
Am. J. Hum. Genet.
, vol.52
, pp. 922-927
-
-
Callen, D.F.1
Thompson, A.D.2
Shen, Y.3
Phillips, H.A.4
Richards, R.I.5
Mulley, J.C.6
Sutherland, G.R.7
-
33
-
-
0000555640
-
A simple and rapid method for estimating representation of species in spruce seedlots using chloroplast DNA restriction-fragment-length-polymorphism.
-
Sutton, B.C.S.; Flanagan, D.J.; El-Kassaby, Y.A. A simple and rapid method for estimating representation of species in spruce seedlots using chloroplast DNA restriction-fragment-length-polymorphism. Silvae Genet. 1991, 40,119-123.
-
(1991)
Silvae Genet.
, vol.40
, pp. 119-123
-
-
Sutton, B.C.S.1
Flanagan, D.J.2
El-Kassaby, Y.A.3
-
34
-
-
0002130453
-
Inheritance of chloroplast and mitochondrial-dna in Picea and composition of hybrids from introgression zones
-
Sutton, B.C.S.; Flanagan, D.J.; Gawley, J.R.; Newton, C.H.; Lester, D.T.; El-Kassaby, Y.A. Inheritance of chloroplast and mitochondrial-dna in Picea and composition of hybrids from introgression zones. Theor. Appl. Genet. 1991, 82, 242-248.
-
(1991)
Theor. Appl. Genet.
, vol.82
, pp. 242-248
-
-
Sutton, B.C.S.1
Flanagan, D.J.2
Gawley, J.R.3
Newton, C.H.4
Lester, D.T.5
El-Kassaby, Y.A.6
-
35
-
-
0029240502
-
A set of universal primers for amplification of polymorphic noncoding regions of mitochondrial and chloroplast dna in plants
-
Demesure, B.; Sodzi, N.; Petit, R.J. A set of universal primers for amplification of polymorphic noncoding regions of mitochondrial and chloroplast dna in plants. Mol. Ecol. 1995, 4, 129-131.
-
(1995)
Mol. Ecol.
, vol.4
, pp. 129-131
-
-
Demesure, B.1
Sodzi, N.2
Petit, R.J.3
-
36
-
-
0036473263
-
Chloroplast DNA variation in European white oaks-Phylogeography and patterns of diversity based on data from over 2600 populations
-
Petit, R.J.; Csaikl, U.M.; Bordacs, S.; Burg, K.; Coart, E.; Cottrell, J.; van Dam, B.; Deans, J.D.; Dumolin-Lapègue, S.; Fineschi, S.; et al. Chloroplast DNA variation in European white oaks-Phylogeography and patterns of diversity based on data from over 2600 populations. Forest Ecol. Manag. 2002, 156, 5-26.
-
(2002)
Forest Ecol. Manag.
, vol.156
, pp. 5-26
-
-
Petit, R.J.1
Csaikl, U.M.2
Bordacs, S.3
Burg, K.4
Coart, E.5
Cottrell, J.6
van Dam, B.7
Deans, J.D.8
Dumolin-Lapègue, S.9
Fineschi, S.10
-
37
-
-
0038814865
-
Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: Imprint of a founder effect associated with postglacial colonization
-
Gamache, I.; Jaramillo-Correa, J.P.; Payette, S.; Bousquet, J. Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: Imprint of a founder effect associated with postglacial colonization. Mol. Ecol. 2003, 12, 891-901.
-
(2003)
Mol. Ecol.
, vol.12
, pp. 891-901
-
-
Gamache, I.1
Jaramillo-Correa, J.P.2
Payette, S.3
Bousquet, J.4
-
38
-
-
10744223304
-
Efficient discovery of DNA polymorphisms in natural populations by Ecotilling
-
Comai, L.; Young, K.; Till, B.J.; Reynolds, S.H.; Greene, E.A.; Codomo, C.A.; Enns, L.C.; Johnson, J.E.; Burtner, C.; Odden, A.R.; et al. Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. Plant J. 2004, 37, 778-786.
-
(2004)
Plant J.
, vol.37
, pp. 778-786
-
-
Comai, L.1
Young, K.2
Till, B.J.3
Reynolds, S.H.4
Greene, E.A.5
Codomo, C.A.6
Enns, L.C.7
Johnson, J.E.8
Burtner, C.9
Odden, A.R.10
-
39
-
-
33644765129
-
Unigene derived microsatellite markers for the cereal genomes
-
Parida, S.K.; Kumar, K.A.R.; Dalal, V.; Singh, N.K.; Mohapatra, T. Unigene derived microsatellite markers for the cereal genomes. Theor. Appl. Genet. 2006, 112, 808-817.
-
(2006)
Theor. Appl. Genet.
, vol.112
, pp. 808-817
-
-
Parida, S.K.1
Kumar, K.A.R.2
Dalal, V.3
Singh, N.K.4
Mohapatra, T.5
-
40
-
-
33644854113
-
Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa
-
Gilchrist, E.J.; Haughn, G.W.; Ying, C.C.; Otto, S.P.; Zhuang, J.; Cheung, D.; Hamberger, B.; Aboutorabi, F.; Kalynyak, T.; Johnson, L.; et al. Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa. Mol. Ecol. 2006, 15, 1367-1378.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 1367-1378
-
-
Gilchrist, E.J.1
Haughn, G.W.2
Ying, C.C.3
Otto, S.P.4
Zhuang, J.5
Cheung, D.6
Hamberger, B.7
Aboutorabi, F.8
Kalynyak, T.9
Johnson, L.10
-
41
-
-
57349143795
-
Identification of COS markers in the Pinaceae
-
Liewlaksaneeyanawin, C.; Zhuang, J.; Tang, M.; Farzaneh, N.; Lueng, G.; Cullis, C.; Findlay, S.; Ritland, C.E.; Bohlmann, J.; Ritland, K. Identification of COS markers in the Pinaceae. Tree Genet. Genomes 2009, 5, 247-255.
-
(2009)
Tree Genet. Genomes
, vol.5
, pp. 247-255
-
-
Liewlaksaneeyanawin, C.1
Zhuang, J.2
Tang, M.3
Farzaneh, N.4
Lueng, G.5
Cullis, C.6
Findlay, S.7
Ritland, C.E.8
Bohlmann, J.9
Ritland, K.10
-
42
-
-
84865411279
-
Comparative mapping in the Fagaceae and beyond with EST-SSRs
-
Bodénès, C.; Chancerel, E.; Gailing, O.; Vendramin, G.G.; Bagnoli, F.; Durand, J.; Goicoechea, P.G.; Soliani, C.; Villani, F.; Mattioni, C.; et al. Comparative mapping in the Fagaceae and beyond with EST-SSRs. BMC Plant Biol. 2012, 12, 153-170.
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 153-170
-
-
Bodénès, C.1
Chancerel, E.2
Gailing, O.3
Vendramin, G.G.4
Bagnoli, F.5
Durand, J.6
Goicoechea, P.G.7
Soliani, C.8
Villani, F.9
Mattioni, C.10
-
43
-
-
84875444971
-
Genotyping-by-sequencing for plant breeding and genetics
-
Poland, J.A.; Rife, T.W. Genotyping-by-sequencing for plant breeding and genetics. Plant Genome 2012, 5, 92-102.
-
(2012)
Plant Genome
, vol.5
, pp. 92-102
-
-
Poland, J.A.1
Rife, T.W.2
-
44
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey, J.W.; Hohenlohe, P.A.; Etter, P.D.; Boone, J.Q.; Catchen, J.M.; Blaxter, M.L. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 2011, 12, 499-510.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
45
-
-
84863393816
-
Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences
-
Zalapa, J.E.; Cuevas, H.; Zhu, H.Y.; Steffan, S.; Senalik, D.; Zeldin, E.; McCown, B.; Harbut, R.; Simon, P. Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences. Am. J. Bot. 2012, 99, 193-208.
-
(2012)
Am. J. Bot.
, vol.99
, pp. 193-208
-
-
Zalapa, J.E.1
Cuevas, H.2
Zhu, H.Y.3
Steffan, S.4
Senalik, D.5
Zeldin, E.6
McCown, B.7
Harbut, R.8
Simon, P.9
-
46
-
-
79951748075
-
SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing
-
Geraldes, A.; Pang, J.; Thiessen, N.; Cezard, T.; Moore, R.; Zhao, Y.; Tam, A.; Wang, S.; Friedmann, M.; Birol, I.; et al. SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing. Mol. Ecol. Resour. 2011, 11, 81-92.
-
(2011)
Mol. Ecol. Resour.
, vol.11
, pp. 81-92
-
-
Geraldes, A.1
Pang, J.2
Thiessen, N.3
Cezard, T.4
Moore, R.5
Zhao, Y.6
Tam, A.7
Wang, S.8
Friedmann, M.9
Birol, I.10
-
47
-
-
84888135880
-
Mining conifers' mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform
-
Chen, C.; Mitchell, S.; Elshire, R.; Buckler, E.; El-Kassaby, Y. Mining conifers' mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform. Tree Genet. Genomes 2013, 9, 1537-1544.
-
(2013)
Tree Genet. Genomes
, vol.9
, pp. 1537-1544
-
-
Chen, C.1
Mitchell, S.2
Elshire, R.3
Buckler, E.4
El-Kassaby, Y.5
-
48
-
-
79960028479
-
Discovery of rare mutations in populations: TILLING by sequencing
-
Tsai, H.; Howell, T.; Nitcher, R.; Missirian, V.; Watson, B.; Ngo, K.J.; Lieberman, M.; Fass, J.; Uauy, C.; Tran, R.K.; et al. Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol. 2011, 156, 1257-1268.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1257-1268
-
-
Tsai, H.1
Howell, T.2
Nitcher, R.3
Missirian, V.4
Watson, B.5
Ngo, K.J.6
Lieberman, M.7
Fass, J.8
Uauy, C.9
Tran, R.K.10
-
49
-
-
80051668334
-
Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: Towards next-generation Ecotilling
-
Marroni, F.; Pinosio, S.; di Centa, E.; Jurman, I.; Boerjan, W.; Felice, N.; Cattonaro, F.; Morgante, M. Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: Towards next-generation Ecotilling. Plant J. 2011, 67, 736-745.
-
(2011)
Plant J.
, vol.67
, pp. 736-745
-
-
Marroni, F.1
Pinosio, S.2
di Centa, E.3
Jurman, I.4
Boerjan, W.5
Felice, N.6
Cattonaro, F.7
Morgante, M.8
-
50
-
-
0004226825
-
Principles of Population Genetics
-
4th ed.; Sinauer Associates Inc.: Sunderland, MA, USA
-
Hartl, D.L.; Clark, A.G. Principles of Population Genetics, 4th ed.; Sinauer Associates Inc.: Sunderland, MA, USA, 2007; p. 652.
-
(2007)
, pp. 652
-
-
Hartl, D.L.1
Clark, A.G.2
-
51
-
-
0003470431
-
Evolution and the Genetics of Populations, Volume 2: The Theory of Gene Frequencies
-
University of Chicago Press: Chicago, IL, USA
-
Wright, S. Evolution and the Genetics of Populations, Volume 2: The Theory of Gene Frequencies; University of Chicago Press: Chicago, IL, USA, 1984; p. 519.
-
(1984)
, pp. 519
-
-
Wright, S.1
-
52
-
-
0029178096
-
An exact test for population differentiation
-
Raymond, M.; Rousset, F. An exact test for population differentiation. Evolution 1995, 49, 1280-1283.
-
(1995)
Evolution
, vol.49
, pp. 1280-1283
-
-
Raymond, M.1
Rousset, F.2
-
53
-
-
0021566877
-
Estimating f-statistics for the analysis of population-structure
-
Weir, B.S.; Cockerham, C.C. Estimating f-statistics for the analysis of population-structure. Evolution 1984, 38, 1358-1370.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.C.2
-
54
-
-
0028816747
-
A measure of population subdivision based on microsatellite allele frequencies
-
Slatkin, M. A measure of population subdivision based on microsatellite allele frequencies. Genetics 1995, 139, 1463-1463.
-
(1995)
Genetics
, vol.139
, pp. 1463-1463
-
-
Slatkin, M.1
-
55
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes-Application to human mitochondrial-DNA restriction data
-
Excoffier, L.; Smouse, P.E.; Quattro, J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes-Application to human mitochondrial-DNA restriction data. Genetics 1992, 131, 479-491.
-
(1992)
Genetics
, vol.131
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
56
-
-
33845537967
-
Using the AMOVA framework to estimate a standardized genetic differentiation measure
-
Meirmans, P.G. Using the AMOVA framework to estimate a standardized genetic differentiation measure. Evolution 2006, 60, 2399-2402.
-
(2006)
Evolution
, vol.60
, pp. 2399-2402
-
-
Meirmans, P.G.1
-
57
-
-
0006919926
-
Analysis of gene diversity in subdivided populations
-
Nei, M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 1973, 70, 3321-3323.
-
(1973)
Proc. Natl. Acad. Sci. USA
, vol.70
, pp. 3321-3323
-
-
Nei, M.1
-
58
-
-
24644446846
-
A standardized genetic differentiation measure
-
Hedrick, P.W. A standardized genetic differentiation measure. Evolution 2005, 59, 1633-1638.
-
(2005)
Evolution
, vol.59
, pp. 1633-1638
-
-
Hedrick, P.W.1
-
59
-
-
0000244010
-
The apportionment of human diversity.
-
Dobzhansky, T., Hecht, M.K., Steere, W.C., Eds.; Appleton-Century-Crofts: New York, NY, USA
-
Lewontin, R.C. The apportionment of human diversity. In Evolutionary Biology, Volume 6; Dobzhansky, T., Hecht, M.K., Steere, W.C., Eds.; Appleton-Century-Crofts: New York, NY, USA, 1972; pp. 381-398.
-
(1972)
Evolutionary Biology
, vol.6
, pp. 381-398
-
-
Lewontin, R.C.1
-
60
-
-
51649095312
-
G(ST) and its relatives do not measure differentiation
-
Jost, L. G(ST) and its relatives do not measure differentiation. Mol. Ecol. 2008, 17, 4015-4026.
-
(2008)
Mol. Ecol.
, vol.17
, pp. 4015-4026
-
-
Jost, L.1
-
61
-
-
79952449963
-
G'(ST) and D do not replace F(ST)
-
Whitlock, M.C. G'(ST) and D do not replace F(ST). Mol. Ecol. 2011, 20, 1083-1091.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 1083-1091
-
-
Whitlock, M.C.1
-
62
-
-
27644559962
-
R Development Core Team. R: A Language and Environment for Statistical Computing
-
R Foundation for Statistical Computing: Vienna, Austria, Available online: (accessed on 16 February 2014).
-
R Development Core Team. R: A Language and Environment for Statistical Computing; R Foundation for Statistical Computing: Vienna, Austria, 2008. Available online: http://www. R-project.org (accessed on 16 February 2014).
-
(2008)
-
-
-
63
-
-
0030467524
-
Evaluating loci for use in the genetic analysis of population structure
-
Beaumont, M.A.; Nichols, R.A. Evaluating loci for use in the genetic analysis of population structure. Prod. R. Soc. B 1996, 263, 1619-1626.
-
(1996)
Prod. R. Soc. B
, vol.263
, pp. 1619-1626
-
-
Beaumont, M.A.1
Nichols, R.A.2
-
64
-
-
38949167127
-
Contrasting patterns of selection at Pinus pinaster Ait. drought stress candidate genes as revealed by genetic differentiation analyses.
-
Eveno, E.; Collada, C.; Guevara, M.A.; Leger, V.; Soto, A.; Diaz, L.; Léger, P.; González-Martínez, S.C.; Cervera, M.T.; Plomion, C.; et al. Contrasting patterns of selection at Pinus pinaster Ait. drought stress candidate genes as revealed by genetic differentiation analyses. Mol. Biol. Evol. 2008, 25, 417-437.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 417-437
-
-
Eveno, E.1
Collada, C.2
Guevara, M.A.3
Leger, V.4
Soto, A.5
Diaz, L.6
Léger, P.7
González-Martínez, S.C.8
Cervera, M.T.9
Plomion, C.10
-
65
-
-
0014494672
-
Number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
-
Kimura, M. Number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations. Genetics 1969, 61, 893-903.
-
(1969)
Genetics
, vol.61
, pp. 893-903
-
-
Kimura, M.1
-
66
-
-
0016404732
-
Mutational pressure as main cause of molecular evolution and polymorphism
-
Ohta, T. Mutational pressure as main cause of molecular evolution and polymorphism. Nature 1974, 252, 351-354.
-
(1974)
Nature
, vol.252
, pp. 351-354
-
-
Ohta, T.1
-
67
-
-
0021066244
-
Evolutionary relationship of DNA-sequences in finite populations
-
Tajima, F. Evolutionary relationship of DNA-sequences in finite populations. Genetics 1983, 105, 437-460.
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
68
-
-
0022534343
-
Excess polymorphism at the Adh locus in Drosophila-melanogaster
-
Kreitman, M.E.; Aguade, M. Excess polymorphism at the Adh locus in Drosophila-melanogaster. Genetics 1986, 114, 93-110.
-
(1986)
Genetics
, vol.114
, pp. 93-110
-
-
Kreitman, M.E.1
Aguade, M.2
-
69
-
-
0024313579
-
Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima, F. Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123, 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
70
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
Fu, Y.X.; Li, W.H. Statistical tests of neutrality of mutations. Genetics 1993, 133, 693-709.
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.X.1
Li, W.H.2
-
71
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
Fay, J.C.; Wu, C.I. Hitchhiking under positive Darwinian selection. Genetics 2000, 155, 1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.I.2
-
72
-
-
33751342650
-
Statistical tests for detecting positive selection by utilizing high-frequency variants
-
Zeng, K.; Fu, Y.X.; Shi, S.; Wu, C.-I. Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics 2006, 174, 1431-1439.
-
(2006)
Genetics
, vol.174
, pp. 1431-1439
-
-
Zeng, K.1
Fu, Y.X.2
Shi, S.3
Wu, C.-I.4
-
73
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald, J.H.; Kreitman, M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 1991, 351, 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
74
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson, R.R.; Kreitman, M.; Aguade, M. A test of neutral molecular evolution based on nucleotide data. Genetics 1987, 116, 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguade, M.3
-
75
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas, J.; Sanchez-DelBarrio, J.C.; Messeguer, X.; Rozas, R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19, 2496-2497.
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sanchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
76
-
-
33749222363
-
Factors influencing levels of genetic diversity in woody plant species
-
Hamrick, J.L.; Godt, M.J.W.; Sherman-Broyles, S.L. Factors influencing levels of genetic diversity in woody plant species. New Forest. 1992, 6, 95-124.
-
(1992)
New Forest.
, vol.6
, pp. 95-124
-
-
Hamrick, J.L.1
Godt, M.J.W.2
Sherman-Broyles, S.L.3
-
77
-
-
0002643285
-
Genetic variation within European tree species
-
Mueller-Starck, G.; Baradat, P.; Bergmann, F. Genetic variation within European tree species. New Forest. 1992, 6, 23-47.
-
(1992)
New Forest.
, vol.6
, pp. 23-47
-
-
Mueller-Starck, G.1
Baradat, P.2
Bergmann, F.3
-
78
-
-
0000015043
-
Restriction-fragment-length-polymorphism mapping in conifers and applications to forest genetics and tree improvement
-
Neale, D.B.; Williams, C.G. Restriction-fragment-length-polymorphism mapping in conifers and applications to forest genetics and tree improvement. Can. J. Forest Res. 1991, 21, 545-554.
-
(1991)
Can. J. Forest Res.
, vol.21
, pp. 545-554
-
-
Neale, D.B.1
Williams, C.G.2
-
79
-
-
84855993168
-
Slow but not low: Genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms
-
Buschiazzo, E.; Ritland, C.; Bohlmann, J.; Ritland, K. Slow but not low: Genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms. BMC Evol. Biol. 2012, 12, 8-21.
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 8-21
-
-
Buschiazzo, E.1
Ritland, C.2
Bohlmann, J.3
Ritland, K.4
-
80
-
-
33847472063
-
High-levels of population differentiation for mitochondrial-DNA haplotypes in Pinus-radiata, muricata, and attenuata
-
Strauss, S.H.; Hong, Y.P.; Hipkins, V.D. High-levels of population differentiation for mitochondrial-DNA haplotypes in Pinus-radiata, muricata, and attenuata. Theor. Appl. Genet. 1993, 86, 605-611.
-
(1993)
Theor. Appl. Genet.
, vol.86
, pp. 605-611
-
-
Strauss, S.H.1
Hong, Y.P.2
Hipkins, V.D.3
-
81
-
-
0002114684
-
Nuclear and organelle gene diversity in Quercus robur and Q. petraea.
-
Genetic Variation in European Populations of Forest Trees; Müller-Starck, G., Ziehe, M., Eds.; Sauerländer's Verlag: Frankfurt am Main, Germany
-
Kremer, A.; Petit, R.J.; Zanetto, A.; Fougere, V.; Ducousso, A.; Wagner, D.B.; Chauvin, C. Nuclear and organelle gene diversity in Quercus robur and Q. petraea. In Genetic Variation in European Populations of Forest Trees; Müller-Starck, G., Ziehe, M., Eds.; Sauerländer's Verlag: Frankfurt am Main, Germany, 1991; pp. 141-166.
-
(1991)
, pp. 141-166
-
-
Kremer, A.1
Petit, R.J.2
Zanetto, A.3
Fougere, V.4
Ducousso, A.5
Wagner, D.B.6
Chauvin, C.7
-
82
-
-
0031856979
-
Identifying populations for conservation on the basis of genetic markers
-
Petit, R.J.; El Mousadik, A.; Pons, O. Identifying populations for conservation on the basis of genetic markers. Conserv. Biol. 1998, 12, 844-855.
-
(1998)
Conserv. Biol.
, vol.12
, pp. 844-855
-
-
Petit, R.J.1
El Mousadik, A.2
Pons, O.3
-
83
-
-
84885366123
-
Intraspecific divergence associated with a biogeographic barrier and climatic models show future threats and long-term decline of a rainforest conifer
-
Mellick, R.; Rossetto, M.; Allen, C.; Wilson, P.D.; Hill, R.S.; Lowe, A. Intraspecific divergence associated with a biogeographic barrier and climatic models show future threats and long-term decline of a rainforest conifer. The Open Conservat. Biol. J. 2013, 7, 1-10.
-
(2013)
The Open Conservat. Biol. J.
, vol.7
, pp. 1-10
-
-
Mellick, R.1
Rossetto, M.2
Allen, C.3
Wilson, P.D.4
Hill, R.S.5
Lowe, A.6
-
84
-
-
84898906622
-
Nucleotide Diversity and Linkage Disequilibrium in Populus nigra.
-
Proceedings of the XLVIII Italian Society of Agricultural Genetics-SIFV-SIGA Joint Meeting, Lecce, Italy, 15-18 September
-
Zaina, G.; Morgante, M. Nucleotide Diversity and Linkage Disequilibrium in Populus nigra. In Proceedings of the XLVIII Italian Society of Agricultural Genetics-SIFV-SIGA Joint Meeting, Lecce, Italy, 15-18 September 2004.
-
(2004)
-
-
Zaina, G.1
Morgante, M.2
-
85
-
-
0038788126
-
Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris
-
Garcia-Gil, M.R.; Mikkonen, M.; Savolainen, O. Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris. Mol. Ecol. 2003, 12, 1195-1206.
-
(2003)
Mol. Ecol.
, vol.12
, pp. 1195-1206
-
-
Garcia-Gil, M.R.1
Mikkonen, M.2
Savolainen, O.3
-
86
-
-
6344279807
-
Nucleotide diversity and linkage disequilibrium in loblolly pine
-
Brown, G.R.; Gill, G.P.; Kuntz, R.J.; Langley, C.H.; Neale, D.B. Nucleotide diversity and linkage disequilibrium in loblolly pine. Proc. Natl. Acad. Sci. USA 2004, 101, 15255-15260.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 15255-15260
-
-
Brown, G.R.1
Gill, G.P.2
Kuntz, R.J.3
Langley, C.H.4
Neale, D.B.5
-
87
-
-
84865761160
-
Comparative nucleotide diversity across North American and European populus species
-
Ismail, M.; Soolanayakanahally, R.Y.; Ingvarsson, P.K.; Guy, R.D.; Jansson, S.; Silim, S.N.; El-Kassaby, Y.A. Comparative nucleotide diversity across North American and European populus species. J. Mol. Evol. 2012, 74, 257-272.
-
(2012)
J. Mol. Evol.
, vol.74
, pp. 257-272
-
-
Ismail, M.1
Soolanayakanahally, R.Y.2
Ingvarsson, P.K.3
Guy, R.D.4
Jansson, S.5
Silim, S.N.6
El-Kassaby, Y.A.7
-
88
-
-
15544362769
-
Nucleotide polymorphism and linkage disequilbrium within and among natural populations of European Aspen (Populus tremula L., Salicaceae)
-
Ingvarsson, P.K. Nucleotide polymorphism and linkage disequilbrium within and among natural populations of European Aspen (Populus tremula L., Salicaceae). Genetics 2005, 169, 945-953.
-
(2005)
Genetics
, vol.169
, pp. 945-953
-
-
Ingvarsson, P.K.1
-
89
-
-
84868197818
-
Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests
-
Mosca, E.; Eckert, A.J.; Liechty, J.D.; Wegrzyn, J.L.; la Porta, N.; Vendramin, G.G.; Neale, D.B. Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests. Evol. Appl. 2012, 5, 762-775.
-
(2012)
Evol. Appl.
, vol.5
, pp. 762-775
-
-
Mosca, E.1
Eckert, A.J.2
Liechty, J.D.3
Wegrzyn, J.L.4
la Porta, N.5
Vendramin, G.G.6
Neale, D.B.7
-
90
-
-
70450265626
-
Genetic and genomic approaches to assess adaptive genetic variation in plants: Forest trees as a model
-
Gailing, O.; Vornam, B.; Leinemann, L.; Finkeldey, R. Genetic and genomic approaches to assess adaptive genetic variation in plants: Forest trees as a model. Physiol. Plant. 2009, 137, 509-519.
-
(2009)
Physiol. Plant.
, vol.137
, pp. 509-519
-
-
Gailing, O.1
Vornam, B.2
Leinemann, L.3
Finkeldey, R.4
-
91
-
-
77956999848
-
Contrasting relations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks
-
Derory, J.; Scotti-Saintagne, C.; Bertocchi, E.; le Dantec, L.; Graignic, N.; Jauffres, A.; Casasoli, M.; Chancerel, E.; Bodénès, C.; Alberto, F.; et al. Contrasting relations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks. Heredity 2010, 105, 401-411.
-
(2010)
Heredity
, vol.105
, pp. 401-411
-
-
Derory, J.1
Scotti-Saintagne, C.2
Bertocchi, E.3
le Dantec, L.4
Graignic, N.5
Jauffres, A.6
Casasoli, M.7
Chancerel, E.8
Bodénès, C.9
Alberto, F.10
-
92
-
-
70350153315
-
Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii).
-
Eckert, A.J.; Wegrzyn, J.L.; Pande, B.; Jermstad, K.D.; Lee, J.M.; Liechty, J.D.; Tearse, B.R.; Krutovsky, K.V.; Neale, D.B. Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii). Genetics 2009, 183, 289-298.
-
(2009)
Genetics
, vol.183
, pp. 289-298
-
-
Eckert, A.J.1
Wegrzyn, J.L.2
Pande, B.3
Jermstad, K.D.4
Lee, J.M.5
Liechty, J.D.6
Tearse, B.R.7
Krutovsky, K.V.8
Neale, D.B.9
-
93
-
-
84872440823
-
Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis × P. glauca).
-
Hamilton, J.A.; Lexer, C.; Aitken, S.N. Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis × P. glauca). Mol. Ecol. 2013, 22, 827-841.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 827-841
-
-
Hamilton, J.A.1
Lexer, C.2
Aitken, S.N.3
-
94
-
-
84890722952
-
Adaptation and exogenous selection in a Picea glauca × Picea engelmannii hybrid zone: Implications for forest management under climate change
-
De la Torre, A.R.; Wang, T.; Jaquish, B.; Aitken, S.N. Adaptation and exogenous selection in a Picea glauca × Picea engelmannii hybrid zone: Implications for forest management under climate change. New Phytol. 2014, 201, 687-699.
-
(2014)
New Phytol.
, vol.201
, pp. 687-699
-
-
De la Torre, A.R.1
Wang, T.2
Jaquish, B.3
Aitken, S.N.4
|