Comparative mapping in the Fagaceae and beyond with EST-SSRs

BMC Plant Biology

Volumn 12, Issue , 2012, Pages

  Bodénès, Catherine ^a,b   Chancerel, Emilie ^a,b   Gailing, Oliver ^c,i   Vendramin, Giovanni G ^d   Bagnoli, Francesca ^d   Durand, Jerome ^a,b   Goicoechea, Pablo G ^e   Soliani, Carolina ^f   Villani, Fiorella ^d   Mattioni, Claudia ^d   Koelewijn, Hans P ^g   Murat, Florent ^h   Salse, Jerome ^h   Roussel, Guy ^a,b   Boury, Christophe ^a,b   Alberto, Florian ^a,b   Kremer, Antoine ^a,b   Plomion, Christophe ^a,b  

^a UMR 1202 BIOGECO   (France)

^b UNIVERSITÉ DE BORDEAUX   (France)

^c UNIVERSITY OF GÖTTINGEN   (Germany)

^d CNR   (Italy)

^e NEIKER and a Vaccine producing Commercial Company CZVSL   (Spain)

^f Inst Nac de Tecnol Agropecuaria   (Argentina)

^g WAGENINGEN UNIVERSITY   (Netherlands)

^h Diversity and Ecophysiology of Cereals   (France)

ⁱ MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; CASTANEA SATIVA; FAGACEAE; GLYCINE MAX; MEDICAGO; POPULUS; QUERCUS; QUERCUS PETRAEA; QUERCUS ROBUR; VITACEAE;

MICROSATELLITE DNA;

ALLELE; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; EXPRESSED SEQUENCE TAG; GENE ORDER; GENETIC LINKAGE; GENETIC VARIABILITY; GENETICS; GENOME SIZE; INHERITANCE; KARYOTYPE; METHODOLOGY; MOLECULAR EVOLUTION; OAK; PLANT CHROMOSOME; PLANT GENOME; QUANTITATIVE TRAIT LOCUS; SYMPATRY; SYNTENY;

ALLELES; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENE ORDER; GENETIC LINKAGE; GENETIC VARIATION; GENOME SIZE; GENOME, PLANT; INHERITANCE PATTERNS; KARYOTYPE; MICROSATELLITE REPEATS; QUANTITATIVE TRAIT LOCI; QUERCUS; SYMPATRY; SYNTENY;

EID: 84865411279     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-153     Document Type: Article

References (85)

1. Bernardo R. Molecular markers and selection for complex traits in plants: Learning from the last 20 years. Crop Science 2008, 48(5):1649-1664.
2. Bergelson J, Roux F. Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat Rev Genet 2010, 11:867-879. 10.1038/nrg2896, 21085205.
3. Abrouk M, Murat F, Pont C, Messing J, Jackson S, Faraut T, Tannier E, Plomion C, Cooke R, Feuillet C, Salse J. Paleogenomics of plants: modern species synteny-based modelling of extinct ancestors. Trends Plant Sci 2010, 15:479-487. 10.1016/j.tplants.2010.06.001, 20638891.
4. Troggio M, Malacarne G, Coppola G, Segala C, Dustin A, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, Grando MS, Velasco R. A Dense Single-Nucleotide Polymorphism-Based Genetic Linkage Map of Grapevine (Vitis vinifera L.) Anchoring Pinot NoirBacterial Artificial Chromosome Contigs. Genetics 2007, 176:2637-2650. 10.1534/genetics.106.067462, 1950661, 17603124.
5. Tanksley SD, Martin W, Ganal MW, Martin GD. Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet 1995, 11:63-68. 10.1016/S0168-9525(00)88999-4, 7716809.
6. Remington DL, Ungerer MC, Purugganan MD. Map-based cloning of quantitative trait loci: progress and prospects. Genet Res 2001, 78:213-218. 10.1017/S0016672301005456, 11865710.
7. Lefebvre-Pautigny F, Wu F, Philippot M, Rigoreau M, Priyono, Zouine M, Frasse P, Bouzayen M, Broun P, Pétiard V, Tanskley SD, Crouzillat D. High resolution synteny maps allowing direct comparisons between the coffee and tomato genomes. Tree Genetics Genomes 2010, 6(4):565-577.
8. Muñoz A, Zheng C, Zhu Q, Albert VA, Rounsley S, Sankoff D. Scaffold filling, contig fusion and comparative gene order inference. BMC Bioinformatics 2010, 11:304. 10.1186/1471-2105-11-304, 2902449, 20525342.
9. Studer B, Asp T, Frei U, Hentrup S, Meally H, Guillard A, Barth S, Muylle H, Roldán-Ruiz I, Barre P, et al. Expressed sequence tag-derived microsatellite markers of perennial ryegrass (Lolium perenne L.). Mol Breeding 2008, 21:533-548.
10. Ellis JR, Burke JM. EST-SSR as a resource for population genetic analyses. Heredity 2007, 99:125-132. 10.1038/sj.hdy.6801001, 17519965.
11. Fouet O, Allegre M, Argout X, Jeanneau M, Lemainque A, Pavek S, Boland A, Risterucci AM, Loor G, Tahi M, Sabau X, Courtois B, Lanaud C. Structural characterization and mapping of functional EST-SSR markers in Theobroma cacao. Tree Genetics and Genomes 2011, 7:799-817.
12. Moccia M, Oger-Desfeux C, Marais G, Widmer AA. White Campion (Silene latifolia) floral expressed sequence tag (EST) library: annotation, EST-SSR characterization, transferability, and utility for comparative mapping. BMC Genomics 2009, 10:243-257. 10.1186/1471-2164-10-243, 2689282, 19467153.
13. Mnejja M, Garcia-Mas J, Audergon JM, Arús P. Prunus microsatellite marker transferability across rosaceous crops. Tree Genetics and Genomes 2010, 10:689-700.
14. Xie WG, Zhang XQ, Cai HW, Liu W, Peng Y. Genetic diversity analysis and transferability of cereal EST-SSR markers to orchardgrass (Dactylis glomerata L.). Biochem Syst Ecol 2010, 38(4):740-749.
15. Luro F, Costantino G, Terol J, Argout X, Allario T, Wincker P, Talon M, Ollitrault P, Morillon R. Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping. BMC Genomics 2008, 9:287-300. 10.1186/1471-2164-9-287, 2435559, 18558001.
16. Kremer A, Vinceti B, Alia R, Burczyk J, Cavers S, Degen D, Finkeldey R, Fluch S, Gömöry D, Gugerli F, Koelewijn HP, Koskela J, Lefèvre F, Morgante M, Mueller-Starck G, Plomion C, Taylor G, Turok J, Savolainen O, Ziegenhagen B. Forest Ecosystem genomics and adaptation: Evoltree Conference Report. Trees Genetics and Genomes 2011, 7:869-875.
17. Barreneche T, Bodénès C, Lexer C, Trontin JF, Fluch S, Streiff R, Plomion C, Roussel G, Steinkellner H, Burg K, et al. A genetic linkage map of Quercus robur L. (pedunculate oak) based on RAPD, SCAR, microsatellite, minisatellite, isozyme and 55 rDNA markers. Theor Appl Genet 1998, 97(7):1090-1103.
18. Casasoli M, Mattioni C, Cherubini M, Villani F. A Genetic Linkage map of European chestnut (Castanea sativa Mill).based on RAPD, ISSR and isozyme markers. Theor Appl Genet 2001, 102(8):1190-1199.
19. Kubisiak TL, Hebard FV, Nelson CD, Zhang J, Bernatzky R, Huang H, Anagnostakis SL, Doudrick RL. Molecular mapping of resistance to blight in an interspecific cross in the genus castanea. Phytopathology 1997, 87(7):751-759. 10.1094/PHYTO.1997.87.7.751, 18945098.
20. Scalfi M, Troggio M, Piovani P, Leonardi S, Magnaschi G, Vendramin GG, Menozzi P. A RAPD, AFLP and SSR linkage map, and QTL analysis in European beech(Fagus sylvatica L.). Theor Appl Genet 2004, 108(3):433-441. 10.1007/s00122-003-1461-3, 14574454.
21. Scotti-Saintagne C, Bodénès C, Barreneche T, Bertocchi E, Plomion C, Kremer A. Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L. Theor Appl Genet 2004, 109(8):1648-1659. 10.1007/s00122-004-1789-3, 15490107.
22. Derory J, Scotti-Saintagne C, Bertocchi E, Le Dantec L, Graignic N, Jauffres A, Casasoli M, Chancerel E, Bodénès C, Alberto F, Kremer A. Contrasting correlations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks. Heredity 2010, 104:438-448. 10.1038/hdy.2009.134, 19812610.
23. Gailing O, Langenfeld-Heyser R, Polle A, Finkeldey R. QTL loci affecting stomatal density and growth in a Quercus robur progeny: implications for the adaptation to changing environments. Glob Chang Biol 2008, 14:1934-1946.
24. Parelle J, Zapater M, Scotti-Saintagne C, Kremer A, Jolivet Y, Dreyer E, Brendel O. Quantitative trait loci of tolerance to waterlogging in a European oak (Quercus robur L.): physiological relevance and temporal effect patterns. Plant Cell Environ 2007, 30(4):422-434. 10.1111/j.1365-3040.2006.01629.x, 17324229.
25. Brendel O, Le Thiec D, Scotti-Saintagne C, Bodénès C, Kremer A, Guehl JM. Quantitative trait loci controlling water use efficiency and related traits in Quercus robur L. Tree Genet Genomes 2008, 4(2):263-278.
26. Barreneche T, Casasoli M, Russell K, Akkak A, Meddour H, Plomion C, Villani F, Kremer A. Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs). Theor Appl Genet 2004, 108(3):558-566. 10.1007/s00122-003-1462-2, 14564395.
27. Casasoli M, Derory J, Morera-Dutrey C, Brendel O, Porth I, Guehl JM, Villani F, Kremer A. Comparison of Quantitative Trait Loci for Adaptive Traits Between Oak and Chestnut Based on an Expressed Sequence Tag Consensus Map. Genetics 2006, 172:533-546. 1456181, 16204213.
28. Casasoli M, Pot D, Plomion C, Monteverdi MC, Barreneche T, Lauteri M, Villani F. Identification of QTLs affecting adaptive traits in Castanea sativa Mill. Plant Cell Env 2004, 27(9):1088-1101.
29. Durand J, Bodénès C, Chancerel E, Frigerio JM, Vendramin G, Sebastiani F, Buonamici A, Gailing O, Koelewijn HP, Villani F, Mattioni C, Cherubini M, Goicoechea PG, Herrán A, Ikaran Z, Cabané C, Ueno S, Alberto F, Dumoulin PY, Guichoux E, de Daruvar A, Kremer A, Plomion C. A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study. BMC Genomics 2010, 11:570-583. 10.1186/1471-2164-11-570, 3091719, 20950475.
30. Grattapaglia D, Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 1994, 137(4):1121-1137. 1206059, 7982566.
31. Berlin S, Lagercrantz U, von Arnold S, Öst T, Rönnberg-Wästljung AC. High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus. BMC Genomics 2010, 11:129-143. 10.1186/1471-2164-11-129, 2834636, 20178595.
32. McConnell M, Mamidi S, Lee R, Chikara S, Rossi M, Papa R, McClean P. Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.). Theor Appl Genet 2010, 121(6):1103-1116. 10.1007/s00122-010-1375-9, 20607211.
33. Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio J-M, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Leger P, Cabane C, Barré A, de Daruvar A, Couloux A, Wincker P, Reviron M-P, Kremer A, Plomion C. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. BMC Genomics 2010, 11:650-674. 10.1186/1471-2164-11-650, 3017864, 21092232.
34. The Gene Ontology Consortium Gene ontology: tool for the unification of biology. Nat Genet 2000, 25(1):x25-29. The Gene Ontology Consortium.
35. Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 15(21(18)):3674-3680.
36. Shamir R, Maron-Katz A, Tanay A, Linhart C, Steinfeld I, Sharan R, Shiloh Y, Elkon R. EXPANDER an integrative program suite for microarray data analysis. BMC Bioinformatics 2005, 6:232-244. 10.1186/1471-2105-6-232, 1261157, 16176576.
37. Dow BD, Ashley MV, Howe HF. Characterization of highly variable (GA/CT)n microsatellites in the bur oak, Quercus macrocarpa. Theor Appl Genet 1995, 91:137-141.
38. Isagi Y, Suhandono S. PCR primers amplifying microsatellite loci of Quercus myrsinifolia Blume and their conservation between oak species. Mol Ecol 1997, 6:897-899. 10.1111/j.1365-294X.1997.tb00147.x, 9301079.
39. Steinkellner H, Fluch S, Turetschek E, Lexer C, Streiff R, Kremer A, Burg K, Glössl J. Identification and characterization of (GA/CT)n- microsatellite loci from Quercus petraea. Plant Mol Biol 1997, 33(6):1093-1096. 10.1023/A:1005736722794, 9154990.
40. Kampfer S, Lexer C, Glössl J, Steinkellner H. Characterization of (GA)n microsatellite loci from Quercus robur. Hereditas 1998, 129:183-186.
41. Lexer C, Heinze B, Steinkellner H, Kampfer S, Ziegenhagen B, Glosssl J. Microsatellite analysis of maternal half-sib families of Quercus robur, pedunculate oak: detection of seed contaminations and inference of the seed parents from the offspring. Theor Appl Genet 1999, 99:185-191.
42. Aldrich PR, Michler CH, Weilin S, Romero-Severson J. Microsatellite markers for northern red oak (Fagaceae: Quercus rubra). Molecular Ecology Notes 2002, 2(4):472-474.
43. Buck EJ, Hadonou M, James CJ, Blakesley D, Russell K. Isolation and characterization of polymorphic microsatellites in European chestnut (Castanea sativa Mill.). Mol. Ecol. Notes 2003, 3:239-241.
44. Marinoni D, Akkak A, Bounous G, Edwards KJ, Botta R. Development and characterization of microsatellite markers in Castanea sativa (Mill.). Mol. Breed 2003, 11:127-136.
45. Schuelke M. An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 2000, 18(2):233-234. 10.1038/72708, 10657137.
46. Van Ooijen JW. JoinMap® 4. Software for the calculation of genetic linkage maps in experimental populations 2006, Netherlands: Wageningen, Kyazma BV.
47. Voorrips RE. MapChart: Software for the graphical presentation of linkage maps and QTLs. J Hered 2002, 93(1):77-78. 10.1093/jhered/93.1.77, 12011185.
48. Hulbert SH, Ilott TW, Legg EJ, Lincoln SE, Lander ES, Michelmore RW. Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphisms. Genetics 1988, 120:947-958. 1203586, 2906309.
49. Chakravarti A, Lasher L, Reefer JE. A maximum likehood method for estimating genome length using genetic linkage data. Genetics 1991, 128:175-182. 1204446, 2060775.
50. Goudet J. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) 2001, Available from http://www.unil.ch/izea/softwares/fstat.html. Updated from Goudet (1995)..
51. Alberto F, Niort J, Derory J, Lepais O, Vitalis R, Galop D, Kremer A. Population differentiation of sessile oak at the altitudinal front of migration in the French Pyrenees. Mol Ecol 2010, 19(13):2626-2639. 10.1111/j.1365-294X.2010.04631.x, 20561196.
52. Derory J, Leger P, Garcia V, Schaeffer J, Hauser MT, Salin F, Luschnig C, Plomion C, Glossl J, Kremer A. Transcriptome analysis of bud burst in sessile oak (Quercus petraea). New Phytol 2006, 170(4):723-738. 10.1111/j.1469-8137.2006.01721.x, 16684234.
53. Lepoittevin C, Frigerio JM, Garnier-Géré P, Salin F, Cervera MT, Vornam B, Harvengt L, Plomion C. In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?. PLoS One 2010, 5(6):e11034. 10.1371/journal.pone.0011034, 2882948, 20543950.
54. Alberto FJ, Derory J, Boury C, Frigerio JM, Zimmermann NE, Kremer A. Imprints of natural selection along environmental gradients in phenology related genes of Quercus petraea submitted..
55. Wegrzyn JL, Lee JM, Liechty J, Neale DB. PineSAP-sequence alignment and SNP identification pipeline. Bioinformatics 2009, 25(19):2609-2610. 10.1093/bioinformatics/btp477, 2752621, 19667082.
56. Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphism. Proc Natl Acad Sci USA 1989, 86:2766-2770. 10.1073/pnas.86.8.2766, 286999, 2565038.
57. Hsu TM, Chen X, Duan S, Miller RD, Kwok PY. Universal SNP genotyping assay with fluorescence polarization detection. Biotechniques 2001, 31:560-570.
58. Plomion C, O'Malley DM. Recombination rate differences for pollen parents and seed parents in pine. Heredity 1996, 77:341-350.
59. Kumar S, Tamura K, Nei M. Mega3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 2004, 5:150-163. 10.1093/bib/5.2.150, 15260895.
60. Gaut BS, Morton BR, McCaig BC, Clegg MT. Substitution rate comparisons between grasses and palms: Synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc Natl Acad Sci USA 1996, 93:10274-10279. 10.1073/pnas.93.19.10274, 38374, 8816790.
61. SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL. The paleontology of intergene retrotransposons of maize. Nat Genet 1998, 20:43-45. 10.1038/1695, 9731528.
62. Salse J, Abrouk M, Murat F, Masood Quraishi U, Feuillet C. Improved standards and new comparative genomics tools provide new insights into grasses paleogenomics. Briefings in Bioinf 2009, 10(6):619-630.
63. Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C. Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals. PNAS USA 2009, 106:14908-14913. 10.1073/pnas.0902350106, 2736418, 19706486.
64. Blanca J, Cañizares J, Roig C, Ziarsolo P, Nuez F, Pico B. Transcriptome characterization and high throughput SSRs and SNPs discovery in Curcubita pepo (Cucurbitaceae). BMC Genomics 2011, 12:104-119. 10.1186/1471-2164-12-104, 3049757, 21310031.
65. Qiu L, Yang C, Yang JB, Liu A. Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communis L.). BMC Plant Biol 2010, 10:278-288. 10.1186/1471-2229-10-278, 3017068, 21162723.
66. Yu Y, Daojun Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between Gossypium hirsutum and G. barbadense. BMC Genomics 2011, 12:15-29. 10.1186/1471-2164-12-15, 3031231, 21214949.
67. Sharma RK, Bhardwaj P, Negi R, Mohapatra T, Ahuja PS. Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.). BMC Plant Biol 2009, 9:53-77. 10.1186/1471-2229-9-53, 2693106, 19426565.
68. Varshney RK, Graner A, Sorrells ME. Genic microsatellite markers in plants: features and applications. Trends Biotechnol 2005, 23(1):48-55. 10.1016/j.tibtech.2004.11.005, 15629858.
69. Danan S, Veyrieras JB, Lefebvre V. Construction of a potato consensus map and QTL meta-analysis offer new insights into the genetic architecture of late blight resistance and plant maturity traits. BMC Plant Biol 2011, 11:16. 10.1186/1471-2229-11-16, 3037844, 21247437.
70. De Keyser E, Shu QY, Bockstaele EV, De Riek J. Multipoint-likelihood maximization mapping on 4 segregating populations to achieve an integrated framework map for QTL analysis in pot azalea (Rhododendron simsii hybrids). BMC Mol Biol 2010, 11:1-21. 10.1186/1471-2199-11-1, 2837023, 20070894.
71. Truntzler Barrière Y, Sawkins MC, Lespinasse D, Betran J, Charcosset A, Moreau L. Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes. Theor Appl Genet 2010, 121(8):1465-1482. 10.1007/s00122-010-1402-x, 20658277.
72. Truco MJ, Antonise R, Lavelle D, Ochoa O, Kozik A, Witsenboer H, Fort SB, Jeuken MJW, Kesseli RV, Lindhout P, Michelmore RW, Peleman J. A high-density, integrated genetic linkage map of lettuce (Lactuca spp.). Theor Appl Genet 2007, 115:735-746. 10.1007/s00122-007-0599-9, 17828385.
73. Blanc G, Charcosset A, Mangin B, Gallais A, Moreau L. Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize. Theor Appl Genet 2006, 113:206-224. 10.1007/s00122-006-0287-1, 16791688.
74. Wu F, Tanksley SD. Chromosomal evolution in the plant family Solanaceae. BMC Genomics 2010, 11:182-193. 10.1186/1471-2164-11-182, 2847972, 20236516.
75. Vezzulli S, Troggio M, Coppola G, Jermakow A, Cartwright D, Zharkikh A, Stefanini M, Grando MS, Viola R, Adam-Blondon AF, Thomas M, This P, Velasco R. A reference integrated map for cultivated grapevine (Vitis vinifera L.) from three crosses, based on 283 SSR and 501 SNP-based markers. Theor Appl Genet 2008, 117:499-511. 10.1007/s00122-008-0794-3, 18504538.
76. Pelgas B, Bousquet J, Beauseigle S, Isabel N. A composite linkage map from two crosses for the species complex Picea mariana × Picea rubens and analysis of synteny with other Pinaceae. Theor Appl Genet 2005, 111:1466-1488. 10.1007/s00122-005-0068-2, 16215729.
77. Kremer A, Casasoli M, Barreneche T, Bodénès C, Sisco P, Kubisiak T, Scalfi M, Leonardi S, Bakker EG, Buiteveld J, Romero-Severson J, Arumuganathan K, Derory J, Scotti-Saintagne C, Roussel G, Bertocchi ME, Lexer C, Porth I, Hebard F, Clark C, Carlson J, Plomion C, Koelewijn H, Villani F. Fagaceae trees. Genome Mapping & Molecular Breeding. Forest Trees 2007, 16-187. Heidelberg, New York, Tokyo: Springer-Verlag, Berlin, Kole CR, 5..
78. N'Diaye A, Van de Weg WE, Kodde LP, Koller B, Dunemann F, Thiermann M, Tartarini S, Gennari F, Durel CE. Construction of an integrated consensus map of the apple genome based on four mapping populations. Tree Genet Genomes 2008, 4:727-743.
79. Doligez A, Adam-Blondon AF, Cipriani G, Di Gaspero G, Laucou V, Merdinoglu D, Meredith CP, Riaz S, Roux SC, This P. An integrated SSR map of grapevine based on five mapping populations. Theor Appl Genet 2006, 113(3):369-382. 10.1007/s00122-006-0295-1, 16799809.
80. Saintagne C, Bodénès C, Barreneche T, Pot D, Plomion C, Kremer A. Distribution of genomic regions differentiating oak species assessed by QTL detection. Heredity 2004, 92(1):20-30. 10.1038/sj.hdy.6800358, 14508500.
81. Abadie P, Roussel G, Dencausse B, Bonnet C, Bertocchi E, Louvet JM, Kremer A, Garnier-Géré P. Strength, diversity and plasticity of postmating reproductive barriers between two hybridizing oak species (Quercus robur L. and Quercus petraea (Matt) Liebl.). J Evol Biol 2011, 25:157-173.
82. Manos PS, Z-K Zhou ZK, Cannon CH. Systematics of Fagaceae: phylogenetic tests of reproductive trait evolution. International Journal of Plant Sciences 2001, 162:1361-1379.
83. Jaillon O, Jean-Marc Aury JM, Noel B, Policriti A, Clepet C, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449:463-467. 10.1038/nature06148, 17721507.
84. Salse J. In silico archeogenomics unveils modern plant genome organisation, regulation and evolution. Curr Opin Plant Biol 2012, 15:1-9. 10.1016/j.pbi.2011.12.001, 22217656.
85. Faivre-Rampant P, Lesur I, Boussardon C, Bitton F, Martin-Magniette ML, Bodénès C, Le Provost G, Berges H, Fluch S, Kremer A, Plomion C. Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome. BMC Genomics 2011, 12:292-305. 10.1186/1471-2164-12-292, 3132169, 21645357.